Projects

Efficiency of Nutrient Use in Cattle:identification of Critical Physiologic and Genomic Regulatory Pathways Appropriated (D)   Accession Number: 412344

Using Genomics to Define and Control Parasitic Infections in Cattle Appropriated (D)   Accession Number: 411566

Bovine Copy Number Polymorphism and Its Implication in Early Embryonic Loss Reimbursable (R)   Accession Number: 411649

Publications

Canonical Pathways and Networks Regulated by Estrogen in the Bovine Mammary Glands - (Peer Reviewed Journal)

Li, R.W., Capuco, A.V. 2008. Canonical Pathways and Networks Regulated by Estrogen in the Bovine Mammary Glands. Biomed Central (BMC) Genomics. 8:55-68.

Serial hepatic gene expression profiling in Angus steers during feed restriction and realimentation - (Other)

Connor, E.E., Kahl, S., Elsasser, T.H., Li, R.W., Barao, S.M. 2008. Serial hepatic gene expression profiling in Angus steers during feed restriction and realimentation. NIH Gene Expression Omnibus (GEO) Database. GSE12853.

Characterization of a novel microdeletion polymorphism on BTA5 in cattle - (Peer Reviewed Journal) - (30-Apr-08)

analysis of Cattle Copy Number Variation Reveals Insights into the Evolution of Ruminants - (Abstract)

Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. analysis of cattle copy number variation reveals insights into the evolution of ruminants. 2008 meeting on the Biology of Genomes, May 6-10, 2007, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. p197.

Butyrate Induced Cell Cycle Arrest in Bovine Cells through Targeting Gene Expression relevance to DNA Replication Apparatus - (Peer Reviewed Journal)

Li, C., Li, R.W. 2008. Butyrate Induced Cell Cycle Arrest in Bovine Cells through Targeting Gene Expression relevance to DNA Replication Apparatus. Gene Regulation and Systems Biology. 2:113-123.

Effects of butyrate on the expression of insulin-like growth factor binding proteins in bovine kidney epithelial cells - (Peer Reviewed Journal)

Li, R.W., Li, C. 2008. Effects of butyrate on the expression of insulin-like growth factor binding proteins in bovine kidney epithelial cells. The Open Veterinary Science Journal. 2:1-6.

Epigenetic Regulation of Genomes: Nutrient-Specific Modulation of Genetic Networks in Bovine Cells - (Proceedings/Symposium)

Li, C., Elsasser, T.H., Li, R.W. 2008. Epigenetic regulation of genomes: nutrient-specific modulation of genetic networks in bovine cells. Animal Genetics International Conference Proceedings. 132:391-398.

Analysis of copy number variation in the bovine genome - (Abstract)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Brown, T., Smith, T.P., Gasbarre, L.C. 2008. Analysis of copy number variation in the bovine genome. Plant and Animal Genome (PAG) XVI Conference. San Diego, CA. p517.

A high-resolution map of copy number variation in the cattle genome - (Abstract)

Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Alexander, L.J., Li, R.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. A high-resolution map of copy number variation in the cattle genome. Plant and Animal Genome VX Conference Abstracts. The NRI Animal Genome PD Meeting, San Diego, CA. p84.

Utilization of Microarray Technology for Functional Genomics in Ictalurid Catfish - (Peer Reviewed Journal)

Liu, Z., Li, R.W., Waldbieser, G.C. 2008. Utilization of Microarray Technology for Functional Genomics in Ictalurid Catfish. North American Journal of Aquaculture.

Detection of germline and somatic copy number variations in cattle - (Proceedings/Symposium)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. Detection of germline and somatic copy number variations in cattle. Developments in Biologicals. 132:231-237.

Initial analysis of copy number variation in the cow genome - (Abstract)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2007. Initial analysis of copy number variation in the cow genome. [abstract}. Gordon Research Conference Proceedings.

Identification of conserved regulatory elements in upstream promoter regions of mammals at relaxed thresholds by comparative genomics - a case study using PEPCK - (Peer Reviewed Journal) - (25-Jun-07)

Epigenetic regulation of genomes: Nutrient-specific modulation of genetic networks in bovine cells - (Abstract)

Li, C.-L, Elsasser, T.H., Li, R.W. 2007 Epigenetic regulation of genomes: nutrient-specific modulation of genetic networks in bovine cells [abstract]. International Symposium on Anima Genomics for Animal Health, Paris, France, October 23-25, 2007.

Epigenetic mechanisms at work: Exploiting nutrient-specific modulation of genetic networks - (Abstract)

Li, C.-J, Elsasser, T.H., Li, R.W. 2007. Epigenetic mechanisms at work: Exploiting nutrient-specific modulation of genetic networks [abstract]. 29th General Assembly of the International Union of Biological Sciences and Scientific Symposium. Proceedings p7, Washington, DC.

Identification of Weakly Conserved Regulatory Elements in Upstream Promoter Regions of Mammals - (Book/Chapter)

Liu, G., Weirauch, M., Van Tassell, C.P., Li, R.W., Sonstegard, T.S., Matukumalli, L.K., Connor, E.E., Hanson, R.W., Yang, J. 2007. Identification of Weakly Conserved Regulatory Elements in Upstream Promoter Regions of Mammals. Conference on the Biology og Genomes, pp. 218.

Poly I:c Inhibits the Expression of Channel Catfish Virus Immediate-Early Gene Orf 1 at Early Times after Infection - (Peer Reviewed Journal)

Silverstein, P.S., Li, R.W., Murdock, C.A., Waldbieser, G.C. 2007. Poly i:c inhibits the expression of channel catfish virus immediate-early gene orf 1 at early times after infection. Fish and Shellfish Immunology 23:479-484.

Local Inflammation as a Possible Mechanism of Resistance to Gastrointestinal Nematodes in Angus Heifers - (Peer Reviewed Journal)

Li, R.W., Sonstegard, T.S., Van Tassell, C.P., Gasbarre, L.C. 2007. Local Inflammation as a Possible Mechanism of Resistance to Gastrointestinal Nematodes in Angus Heifers. Veterinary Parasitology. 145:100-107.

Pathways analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line - (Peer Reviewed Journal)

Li, C.J., Li, R.W., Wang, Y.H. Elsasser, T.H. 2007. Pathway analysis identifies perturbation of genetic networks induced by butyrate in a bovine kidney epithelial cell line. Functional and Integrative Genomics. 7:193-205.

Regulation of Gene Expression in the Bovine Mammary Gland by Ovarian Steroids - (Peer Reviewed Journal)

Connor, E.E., Meyer, M.J., Li, R.W., Van Amburgh, M.E., Boisclair, Y.R., Capuco, A.V. 2007. Regulation of gene expression in the bovine mammary gland by ovarian steroids. Journal of Dairy Science. 90 (E. Suppl):E55-E65.

Identification of Estrogen-Responsive Genes in the Parenchyma and Fat Pad of the Bovine Mammary Gland by Microarray Analysis - (Peer Reviewed Journal)

Li, R.W., Meyer, M.J., Van Tassell, C.P., Sonstegard, T.S., Connor, E.E., Van Amburgh, M.E., Boisclair, Y.R., Capuco, A.V. 2006. Identification of estrogen responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis. Physiological Genomics 27(1):42-53.

Production and Utilization of a High-Density Oligonucleotide Microarray in Channel Catfish, Ictalurus punctatus - (Peer Reviewed Journal)

Li, R.W., Waldbieser, G.C. 2006. Production and Utilization of a High-Density Oligonucleotide Microarray in Channel Catfish, Ictalurus punctatus. Biomed Central (BMC) Genomics 2006, vol. 7:134.

Resistance to Gastrointestinal nematodse of cattle: Identification of genomic regions affecting resistance and potential mechanisms - (Abstract)

Gasbarre, L.C., Sonstegard, T.S., Li, R.W., Araujo, R., Van Tassell, C.P. 2006. Resistance to Gastrointestinal nematodse of cattle: Identification of genomic regions affecting resistance and potential mechanisms [abstract]. American Association of Veterinary Parasitologists Proceedings.

A Mammary Gland Biologist's Persepective on Functional Genomics - (Proceedings/Symposium)

Capuco, A.V., Meyer, M.J., Li, R.W., Connor, E.E., Van Tassell, C.P., Boisclair, Y.R., Van Amburgh, M.E., Sonstegard, T.S., Urban Jr, J.F. 2006. A mammary gland biologist's persepective on functional genomics. World Congress on Genetics Applied to Livestock Production. Belo Horizonte, Brazil, August 13-18, pp 01-6.

Bos Taurus 60mer Oligonucleotide Microarray - (Other)

Li, R.W., Capuco, A.V., Van Tassell, C.P., Sonstegard, T.S., Connor, E.E., Gasbarre, L.C. 2006. Bos taurus 60mer oligonucleotide microarray. NIH Gene Expression Omnibus (GEO) Database.

Regulation of Gene Expression in the Bovine Mammary Gland by Ovarian Steroids - (Abstract)

Connor, E.E., Meyer, M.J., Li, R.W., Van Amburgh, M.E., Boisclair, Y.R., Capuco, A.V. 2006. Regulation of gene expression in the bovine mammary gland by ovarian steroids [abstract]. J. Dairy Sci. 89(Suppl. 1):426.

Advancements and Future Challenges in Understanding Mammary Gland Function - (Abstract)

Capuco, A.V., Connor, E.E., Meyer, M.J., Li, R.W., Van Tassell, C.P., Sonstegard, T.S., Van Amburgh, M.E., Boisclair, Y.R. 2006. Advancements and future challenges in understanding mammary gland function [abstract]. J. Dairy Sci. 89(Suppl. 1):409.

Sodium Butyrate Induced Gene Expression Changes in the Madin-Darby Bovine Kidney Epithelial Cells - (Other)

Li, R.W., Li, C. 2006. Sodium butyrate induced gene expression changes in the madin-darby bovine kidney epithelial cells [abstract]. Gene expression Omnibus. GSE 3970.

Genomic Characterization and Expression Analysis of the Baculoviral Iap Repeat Containing 2 (Birc2) Gene in Channel Catfish, Ictalurus Punctatus - (Peer Reviewed Journal)

Li, R.W., Silverstein, P.S., Waldbieser, G.C. 2005. Genomic characterization and expression analysis of the baculoviral iap repeat containing 2 (birc2) gene in channel catfish, ictalurus punctatus. Animal Genetics 36:537-539.

Developing High-Density Bovine Oligo Microarrays to Investigate Genes Involved in Mammary Gland Development - (Abstract)

Li, R.W., Capuco, A.V., Meyer, M., Boisclair, Y., Van Amburgh, M. 2005. Developing high-density bovine oligo microarrays to investigate genes involved in mammary gland development [abstract]. BARC Poster Day. Paper No. 40.

Characterization of Fezl Effects on Scs in a Sample of North American Holsteins - (Abstract)

Sonstegard, T.S., Van Tassell, C.P. 2005. Characterization of fezl effects on scs in a sample of north american Holsteins [abstract]. ADSA/ASAS Joint Meeting. p. 248.

Genomic Organization and Expression of the Natural Killer Cell Enhancing Factor (Nkef) Gene in Channel Catfish, Ictalurus Punctatus (Rafinesque) - (Peer Reviewed Journal)

Li, R.W., Waldbieser, G.C. 2006. Genomic organization and expression of the natural killer cell enhancing factor (nkef) gene in channel catfish, ictalurus punctatus (rafinesque). Fish and Shellfish Immunology 20:72-82.