CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. COX6B1, Cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)
Sequence ID:NM_001863

Database Links

UniGeneEntrez GeneOMIMDTPSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 40831067 - 40841389

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3344701Full LengthBC001015cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)
3347455Full LengthBC002478cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001854  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_001863 NP_001854 P14854 COX6B

Related Sequences

 
mRNAGenPeptSwissProt
BC001015 AAH01015 P14854
BC002478 AAH02478 P14854
BT006945 AAP35591 P14854
DQ893609 ABM84535  
DQ895078 ABM86004  
D28426 BAA05792  
AK312140 BAG35076 B2R5C9
X13923 CAA32114 P14854
X54473 CAA38352 P14854
CR456789 CAG33070 P14854
CR542137 CAG46934 P14854

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COX6B1 NP_001854 M.musculus Cox6b1 110323 Gene Info NP_079904 85
A.gambiae AgaP_AGAP006471 1277077   XP_316509 63
D.melanogaster CG14235 32989   NP_728294 62
S.pombe cox12 2538835   NP_588322 58
N.crassa NCU06741.1 2709014   XP_327027 55
A.thaliana COX6B 838851   NP_173661 50
M.grisea MGG_01111 2674790   XP_368133 50
S.cerevisiae COX12 850727   NP_013139 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

Kegg Pathways
Pathway information courtesy of Kegg


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.