| | Survey and Summary SURVEY
AND SUMMARY: The applications of universal DNA base analogues David Loakes Nucleic Acids Res. 2001 June 15; 29(12): 2437–2447. PMCID: PMC55727 Articles The yeast POP2 gene
encodes a nuclease involved in mRNA deadenylation Marie-Claire Daugeron, Fabienne Mauxion, and Bertrand Séraphin Nucleic Acids Res. 2001 June 15; 29(12): 2448–2455. PMCID: PMC55743 Synthesis and properties of oligonucleotides containing
5-formyl-2′-deoxycytidine: in
vitro DNA polymerase reactions on DNA templates containing
5-formyl-2′-deoxycytidine Naoko Karino, Yoshihito Ueno, and Akira Matsuda Nucleic Acids Res. 2001 June 15; 29(12): 2456–2463. PMCID: PMC55734 RecA-mediated strand exchange
traverses substitutional heterologies more easily than deletions or
insertions Alexander Bucka and Andrzej Stasiak Nucleic Acids Res. 2001 June 15; 29(12): 2464–2470. PMCID: PMC55751 Non-independence of Mnt repressor–operator interaction
determined by a new quantitative multiple fluorescence relative
affinity (QuMFRA) assay Tsz-Kwong Man and Gary
D. Stormo Nucleic Acids Res. 2001 June 15; 29(12): 2471–2478. PMCID: PMC55749 The RNA-binding specificity
of the mouse Dazl protein Julian P. Venables, Matteo Ruggiu, and Howard
J. Cooke Nucleic Acids Res. 2001 June 15; 29(12): 2479–2483. PMCID: PMC55744 Gene expression in isolated plant
mitochondria: high fidelity of transcription, splicing and editing
of a transgene product in electroporated organelles Jean-Claude Farré and Alejandro Araya Nucleic Acids Res. 2001 June 15; 29(12): 2484–2491. PMCID: PMC55745 The nicking endonuclease N.BstNBI is closely related to Type IIs restriction
endonucleases MlyI and PleI Lauren S. Higgins, Caroline Besnier, and Huimin Kong Nucleic Acids Res. 2001 June 15; 29(12): 2492–2501. PMCID: PMC55753 An unusually compact external
promoter for RNA polymerase III transcription of the human H1RNA
gene Evelyne Myslinski, Jean-Christophe Amé, Alain Krol, and Philippe Carbon Nucleic Acids Res. 2001 June 15; 29(12): 2502–2509. PMCID: PMC55750 The participation of 5S rRNA
in the co-translational formation of a eukaryotic 5S ribonucleoprotein
complex Elong Lin, Sue-Wen Lin, and Alan Lin Nucleic Acids Res. 2001 June 15; 29(12): 2510–2516. PMCID: PMC55736 Mi2, an auto-antigen for dermatomyositis,
is an ATP-dependent nucleosome remodeling factor Heng-Bin Wang and Yi Zhang Nucleic Acids Res. 2001 June 15; 29(12): 2517–2521. PMCID: PMC55739 The effect of amino groups on
the stability of DNA duplexes and triplexes based on purines derived
from inosine Elena Cubero, Ramon Güimil-García, F. Javier Luque, Ramon Eritja, and Modesto Orozco Nucleic Acids Res. 2001 June 15; 29(12): 2522–2534. PMCID: PMC55742 Hepatitis C virus internal ribosome
entry site RNA contains a tertiary structural element in a functional domain
of stem–loop II Alita J. Lyons, J.
Robin Lytle, Jordi Gomez, and Hugh D. Robertson Nucleic Acids Res. 2001 June 15; 29(12): 2535–2541. PMCID: PMC55737 A novel cell-free system reveals
a mechanism of circular DNA formation from tandem repeats Sarit Cohen and Marcel Mechali Nucleic Acids Res. 2001 June 15; 29(12): 2542–2548. PMCID: PMC55730 Issues in cDNA microarray analysis:
quality filtering, channel normalization, models of variations and assessment
of gene effects George C. Tseng, Min-Kyu Oh, Lars Rohlin, James C. Liao, and Wing Hung Wong Nucleic Acids Res. 2001 June 15; 29(12): 2549–2557. PMCID: PMC55725 A novel fluorometric oligonucleotide
assay to measure O 6-methylguanine DNA
methyltransferase, methylpurine DNA glycosylase, 8-oxoguanine DNA glycosylase
and abasic endonuclease activities: DNA repair status in human breast
carcinoma cells overexpressing methylpurine DNA glycosylase Emiko L. Kreklau, Melissa Limp-Foster, Naili Liu, Yi Xu, Mark
R. Kelley, and Leonard C. Erickson Nucleic Acids Res. 2001 June 15; 29(12): 2558–2566. PMCID: PMC55735 The brefeldin A resistance protein
Bfr1p is a component of polyribosome-associated mRNP complexes in
yeast Brian D. Lang, Ai-min Li, Heather D. Black-Brewster, and Judith L. Fridovich-Keil Nucleic Acids Res. 2001 June 15; 29(12): 2567–2574. PMCID: PMC55738 A mRNA determinant of gRNA-directed
kinetoplastid editing Aaron L. Kabb, Lisa
M. Oppegard, Bruce
A. McKenzie, and Gregory
J. Connell Nucleic Acids Res. 2001 June 15; 29(12): 2575–2580. PMCID: PMC55732 Human GC-AG alternative intron
isoforms with weak donor sites show enhanced consensus at acceptor exon
positions T. A. Thanaraj and Francis Clark Nucleic Acids Res. 2001 June 15; 29(12): 2581–2593. PMCID: PMC55748 Mutations in the TAR hairpin
affect the equilibrium between alternative conformations of the
HIV-1 leader RNA Hendrik Huthoff and Ben Berkhout Nucleic Acids Res. 2001 June 15; 29(12): 2594–2600. PMCID: PMC55741 Structure in nascent RNA leads
to termination of slippage transcription by T7 RNA polymerase Iaroslav Kuzmine, Philip
A. Gottlieb, and Craig
T. Martin Nucleic Acids Res. 2001 June 15; 29(12): 2601–2606. PMCID: PMC55752 GeneMarkS: a self-training method
for prediction of gene starts in microbial genomes. Implications
for finding sequence motifs in regulatory regions John Besemer, Alexandre Lomsadze, and Mark Borodovsky Nucleic Acids Res. 2001 June 15; 29(12): 2607–2618. PMCID: PMC55746 Experimental evaluation of the
Liu–Beveridge dinucleotide step model of DNA structure Philip R. Hardwidge and L.
James Maher Nucleic Acids Res. 2001 June 15; 29(12): 2619–2625. PMCID: PMC55731 Binding specificity and stability
of duplexes formed by modified oligonucleotides with a 4096-hexanucleotide microarray Edward Timofeev and Andrei Mirzabekov Nucleic Acids Res. 2001 June 15; 29(12): 2626–2634. PMCID: PMC55729 DNA–XPA interactions:
a 31P NMR and molecular modeling study of dCCAATAACC
association with the minimal DNA-binding domain (M98–F219)
of the nucleotide excision repair protein XPA Garry W. Buchko, Chang-Shung Tung, Kathleen McAteer, Nancy G. Isern, Leonard D. Spicer, and Michael
A. Kennedy Nucleic Acids Res. 2001 June 15; 29(12): 2635–2643. PMCID: PMC55733 Folding of the group I intron
ribozyme from the 26S rRNA gene of Candida albicans Yi Zhang and Michael
J. Leibowitz Nucleic Acids Res. 2001 June 15; 29(12): 2644–2653. PMCID: PMC55740 Massive parallel analysis of
the binding specificity of histone-like protein HU to single- and
double-stranded DNA with generic oligodeoxyribonucleotide microchips Alexander S. Krylov, Olga A. Zasedateleva, Dmitry V. Prokopenko, Josette Rouviere-Yaniv, and Andrei D. Mirzabekov Nucleic Acids Res. 2001 June 15; 29(12): 2654–2660. PMCID: PMC55728 The first phytoplasma RNase P
RNA provides new insights into the sequence requirements of this ribozyme Matthias Wagner, Christiane Fingerhut, Hans
J. Gross, and Astrid Schön Nucleic Acids Res. 2001 June 15; 29(12): 2661–2665. PMCID: PMC55747 Differential DNA recognition
and glycosylase activity of the native human MutY homolog (hMYH)
and recombinant hMYH expressed in bacteria Yesong Gu and A-Lien Lu Nucleic Acids Res. 2001 June 15; 29(12): 2666–2674. PMCID: PMC55726 NAR Methods Online Efficient and heritable functional
knock-out of an adult phenotype in Drosophila using
a GAL4-driven hairpin RNA incorporating a heterologous spacer Alberto Piccin, Ahmad Salameh, Clara Benna, Federica Sandrelli, Gabriella Mazzotta, Mauro Zordan, Ezio Rosato, Charalambos
P. Kyriacou, and Rodolfo Costa Nucleic Acids Res. 2001 June 15; 29(12): e55. PMCID: PMC55754 A single vector containing modified cre recombinase and LOX recombination sequences
for inducible tissue-specific amplification of gene expression Stanislaw J. Kaczmarczyk and Jeffrey
E. Green Nucleic Acids Res. 2001 June 15; 29(12): e56. PMCID: PMC55755 A new G-tailing method for the
determination of the poly(A) tail length applied to hepatitis A
virus RNA Yuri Yu. Kusov, Gocha Shatirishvili, Georgy Dzagurov, and Verena Gauss-Müller Nucleic Acids Res. 2001 June 15; 29(12): e57. PMCID: PMC55756 Real-time detection of gene promoter
activity: quantitation of toxin gene transcription Kandiah Jeyaseelan, Donghui Ma, and Arunmozhiarasi Armugam Nucleic Acids Res. 2001 June 15; 29(12): e58. PMCID: PMC55757 Yeast vectors for integration
at the HO locus Warren P. Voth, James
D. Richards, Janet
M. Shaw, and David
J. Stillman Nucleic Acids Res. 2001 June 15; 29(12): e59. PMCID: PMC55758 Identification and prevention
of a GC content bias in SAGE libraries Elliott H. Margulies, Sharon L.
R. Kardia, and Jeffrey
W. Innis Nucleic Acids Res. 2001 June 15; 29(12): e60. PMCID: PMC55759 |