CGAP       the Cancer Genome Anatomy Project
    CGAP HOW TO GenesChromosomesTissuesSAGEPathwaysTools  

Genes

Gene Tools

SNP Tools

Transcriptome Analysis

CGAP Data

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


Gene Info

Gene Information For:Hs. TMEM189, Ubiquitin-conjugating enzyme E2 variant 1
Sequence ID:NM_199203
NM_021988
NM_199144
NM_003349
NM_199129
NM_022442
NM_001032288

Database Links

UniGeneEntrez GeneOMIMDTPSNPViewerAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 48174113 - 48203654

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961017Full LengthBC000468ubiquitin-conjugating enzyme E2 variant 1
2960953IncompleteBC008944ubiquitin-conjugating enzyme E2 variant 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003340  NP_068823  NP_954595  NP_954673  

Protein Infomation

RefSeq

mRNAProteinSwissProtPfam Motifs
NM_001032288 NP_001027459    
NM_003349 NP_003340 Q13404 UQ_con
NM_021988 NP_068823   UQ_con
NM_022442 NP_071887 Q5TGE3  
NM_199129 NP_954580 A5PLL7  
NM_199144 NP_954595   UQ_con
NM_199203 NP_954673   UQ_con

Related Sequences

 
mRNAGenPeptSwissProt
U39360 AAB72015 Q13404
U39361 AAB72016 Q13404
U97280 AAC02755 Q13404
U97281 AAC02756 Q13404
Q5TGE3
U97279 AAC02780 Q13404
AF155120 AAF08702 A5PLL7
AY008273 AAG24229 Q13404
BC000468 AAH00468 Q13404
BC008944 AAH08944 Q13404
BC140089 AAI40090  
BC142966 AAI42967 A5PLL7
BC143091 AAI43092  
BT007382 AAP36046 Q13404
AK023028 BAB14364 A5PLL7
AB044550 BAB18652 A5PLL7
AK304595 BAG65381 Q5TGE2

Homologs (from HomoloGene)

Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UBE2V1 NP_001027459 M.musculus Ube2v1 66589 Gene Info NP_075719 94
A.gambiae AgaP_AGAP006937 1270148   XP_308820 70
D.melanogaster Uev1A 38613   NP_647959 67
A.thaliana MMZ3/UEV1C 818179   NP_850259 54
P.falciparum MAL3P2.20 814375   XP_001351133 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.