NERSC Technical Reports

2008

LBNL-1014E. Katie Antypas, John Shalf, Harvey Wasserman (2008). NERSC-6 Workload Analysis and Benchmark Selection Process.

LBNL-960E. Daniela M. Ushizima, Oliver Rubel, Prabhat, Gunther H. Weber, E. Wes Bethel, Cecilia R. Aragon, Cameron G.R. Geddes, Estelle Cormier-Michel, Bernd Hamann, Peter Messmer, Hans Hagen (2008). Automated analysis for detecting beams in laser wakefield simulations. 2008 International Conference on Machine Learning and Applications (ICMLA'08), San Diego, California.

LBNL-845E. Samuel Williams, Kaushik Datta, Jonathan Carter, Leonid Oliker, John Shalf, Katherine Yelick, David H Bailey (2008). PERI — Auto-tuning Memory Intensive Kernels for Multicore. SciDAC 2008 Conference, Seattle, WA.

LBNL-660E. Shreyas Cholia, R. Jefferson Porter (2008). Publication and Protection of Sensitive Site Information in a Grid Infrastructure. In Proceedings of the CCGRID 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid, Lyon, France.

LBNL-430E. Akbar Mokhtarani, William Kramer, Jason Hick (2008). Reliability Results of NERSC Systems.

2007

LBNL-63538. William T.C. Kramer, Howard Walter, Gary New, Tom Engle, Rob Pennington, Brad Comes, Buddy Bland, Bob Tomlison, Jim Kasdorf, David Skinner, Kevin Regimbal (2007). Report of the Workshop on Petascale Systems Integration for Large Scale Facilities, San Francisco, CA.

LBNL-63342. John Hules (Ed.) (2007) NERSC Annual Report 2006.

LBNL-63251. Jacobsen, J.S.; Joyner, D.C.; Borglin, S.E.; Hazen, T.C.; Arkin, A.P.; Bethel, E.W. (2007). Visualization of Growth Curve Data from Phenotype Microarray Experiments. In Proceedings of the 11th International Conference Information Visualization (IV07), Zurich, Switzerland, July 4–6, 2007.

LBNL-63043. Jonathan Carter, Antonio Garcia-Martinez, and Bill Kramer (2007). Automatic Analysis of Developmental Regulatory Networks.

LBNL-63042. A. Adelmann, A. Gsell, B. Oswald, T. Schietinger, W. Bethel, J.M. Shalf, C. Siegerist, K. Stockinger (2007). Progress on H5Part: A Portable High Performance Parallel Data Interface for Electromagnetics Simulations. Particle Accelerator Conference, Albuquerque, New Mexico, USA, June 2007, IEEE Computer Society Press.

LBNL-62954. Weber, G.H., Beckner, V.E., Childs, H., Ligocki, T.J., Miller, M.C., Van Straalen, B., Bethel, E.W. (2007). Visualization Tools for Adaptive Mesh Refinement Data. In Benger, W., Heinzel, R., Kapferer, W., Schoor,W., Tyagi, M., Venkataraman, S. and Weber, G.H., eds., Proceedings of the 4th High-End Visualization Workshop (Obergurgl, ls Tyrol, Austria, June 18–22), Lehmmanns Media, 2007.  

LBNL-62952. Leonid Oliker, Andrew Canning, Jonathan Carter, Costin Iancu, Michael Lijewski, Shoaib Kamil, John Shalf, Hongzhang Shan, Erich Strohmaier, Stephane Ethier and Tom Goodale (2007). Scientific Application Performance on Candidate PetaScale Platforms. In Proc. of IPDPS, Long Beach, CA.

LBNL-62662. Jonathan Carter, Yun (Helen) He, John Shalf, Hongzhang Shan, Erich Strohmaier, and Harvey Wasserman (2007). The Performance Effect of Multi-core on Scientific Applications. In Proc. of Cray User Group, Seattle, WA.

LBNL-62646. Mark S. Miller, Jed Donnelley, Alan H. Karp (2007). Delegating Responsibility in Digital Systems: Horton's "Who Done It?" 2nd USENIX Workshop on Hot Topics in Security (HotSec '07), Boston, MA.

LBNL-62564. Katerina Antypas (2007). Allinea DDT as a Parallel Debugging Alternative to Totalview.

LBNL-62500. John Levesque, Jeff Larkin, Martyn Foster, Joe Glenski, Garry Geissler, Stephen Whalen, Brian Waldecker, Jonathan Carter, David Skinner, Helen He, Harvey Wasserman, John Shalf, Hongzhang Shan, Erich Strohmaier (2007). Understanding and Mitigating Multicore Performance Issues on the AMD Opteron Architecture.

LBNL-62450. Huang, M.-Y., Rubel, O., Weber, G.H., Luengo Hendriks, C. L., Biggin, M. D., Hagen, H. and Hamann, B. (2007). Segmenting gene expression patterns of early-stage Drosophila embryos. In Linsen, L., Hagen, H. and Hamann, eds., Mathematical Methods for Visualization in Medicine and Life Sciences, Springer-Verlag, Heidelberg, Germany, in press.

LBNL-62380. C. Aragon and S. Poon. (2007). The Impact of Usability on Supernova Discovery. Workshop on Increasing the Impact of Usability Work in Software Development, CHI 2007: ACM Conference on Human Factors in Computing Systems, San Jose, California.

LBNL-62284. Howard Walter (2007). NERSC Cyber Security Challenges That Require DOE Development and Support.

LBNL-62252. J. Chen, I. Yoon and E. W. Bethel (2007). Interactive, Internet Delivery of Visualization via Structured, Prerendered Multiresolution Imagery. To appear in IEEE Transactions on Visualization and Computer Graphics.

LBNL-62117. W. Kramer and J. Hules (2007). How Are We Doing? A Self-Assessment of the Quality of Services and Systems at NERSC, 2005-2006.

LBNL-61182. C. Aragon and D. Aragon (2007). A Fast Contour Descriptor Algorithm for Supernova Image Classification. In Proceedings of the SPIE/IS&T Conference on Electronic Imaging, Volume 6469–07, Nasser Kehtarnavaz, Matthias F. Carlsohn, eds.

LBNL-61080. F. Reiss, K. Stockinger, K. Wu, A. Shoshani, J. M. Hellerstein (2007). Enabling Real-Time Querying of Live and Historical Stream Data. In International Conference on Scientific and Statistical Database Management (SSDBM 2007), Banff, Canada, July 2007, IEEE Computer Society Press.

LBNL-60960. Leonid Oliker, Shoaib Kamil, Andrew Canning, Jonathan Carter, Costin Iancu, John Shalf, Hongzhang Shan, David Skinner, Erich Strohmaier, Tom Goodale (2007). Application Scalability and Communication Signatures on Leading Supercomputing Platforms.

LBNL-60800. Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, Stephane Ethier (in press). Scientific Application Performance on Leading Scalar and Vector Supercomputing Platforms. International Journal of High Performance Computing Applications.

The STAR Collaboration (inc. D. Olsen) (2007). Mass, quark-number, and sqrt(sNN) dependence of the second and fourth flow harmonics in ultra-relativistic nucleus-nucleus collisions. Phys. Rev. C 75, 054906.

The STAR Collaboration (inc. D. Olsen) (2007). Strange particle production in p+p collisions at sqrt(s) = 200-GeV. Phys. Rev. C 75, 064901.

The STAR Collaboration (inc. D. Olsen) (2007). Transverse momentum and centrality dependence of high pT non-photonic electron suppression in Au+Au collisions at sqrt(sNN) = 200 GeV. Phys. Rev. Lett. 98, 192301.

The STAR Collaboration (inc. D. Olsen) (2007). Df Dh Correlations in Central Au+Au Collisions at sqrt(sNN) = 200 GeV. Phys. Rev. C 75, 034901.

The STAR Collaboration (inc. D. Olsen) (2007). Scaling Properties of Hyperon Production in Au+Au Collisions at sqrt(sNN) = 200 GeV. Phys. Rev. Lett. 98, 062301.

The STAR Collaboration (inc. D. Olsen) (2007). The Energy dependence of pt angular correlations inferred from mean-pt fluctuation scale dependence in heavy ion collisions at the SPS and RHIC. J. Phys. G 33, 451.

2006

LBNL-61192. R. Romano, C. Aragon and C. Ding (2006). Supernova Recognition Using Support Vector Machines. In Proceedings of the 5th International Conference on Machine Learning and Applications (ICMLA’06), Orlando, FL, December 2006. (Best Paper Award)

LBNL-60296. John Hules (Ed.) (2006). NERSC Annual Report 2005.

LBNL-60180. Kathy Yelick (2006). Performance Modeling and Optimization of a High Energy Colliding Beam Simulation Code. In Proceedings of SC2006, Tampa, FL, IEEE Computer Society.

LBNL-60166. T. L. Killeen and H. D. Simon (2006). Supporting National User Communities at NERSC and NCAR. Cyberinfrastructure Technology Watch 2 (2). http://www-library.lbl.gov/docs/LBNL/601/66/PDF/LBNL-60166.pdf

LBNL-60060. S. Kamil, A. Pinar, D. Gunter, M. Lijewski, L. Oliker, J. Shalf, and D. Skinner (2006). Reconfigurable Hybrid Interconnection for Static and Dynamic Scientific Applications. In International Conference for High Performance Computing, Networking, Storage and Analysis , Tampa, FL. http://www-library.lbl.gov/docs/LBNL/600/60/PDF/LBNL-60060.pdf

LBNL-60053. Kurt Stockinger, E. Wes Bethel, Scott Campbell, Eli Dart, Kesheng Wu (2006). Detecting Distributed Scans Using High-Performance Query-Driven Visualization. In Proceedings of SC06.

LBNL-59999. W. Kramer, J. Carter, D. Skinner, L. Oliker, P. Husbands, P. Hargrove, J. Shalf, O. Marques, E. Ng, T. Drummond, K. Yelick (2006). Software Roadmap to Plug and Play Petaflop/s.

LBNL-59819. E. Wes Bethel, Scott Campbell, Eli Dart, Kurt Stockinger and Kesheng Wu (2006). Accelerating Network Traffic Analysis Using Query-Driven Visualization. In Proceedings of the 2006 IEEE Symposium on Visual Analytics Science and Technology, pp 115–122, Baltimore MD, November 2006.

LBNL-59340. J. Carter and L. Oliker (2006). Performance Evaluation of Lattice-Boltzmann Magnetohydrodynamics Simulations on Modern Parallel Vector Systems. In 2nd Teraflop Workshop, edited by M. Resch, Springer, Stuttgart, Germany. http://www-library.lbl.gov/docs/LBNL/593/40/PDF/LBNL-59340.pdf

LBNL-58935. J. Gabler (2006). Better Bonded Ethernet Load Balancing. http://www-library.lbl.gov/docs/LBNL/589/35/PDF/LBNL-58935.pdf | http://www-library.lbl.gov/docs/LBNL/589/35/SRC/LBNL-58935.doc

LBNL-58004. Jonathan Carter, Leonid Oliker, John Shalf (2006). Performance Evaluation of Scientific Applications on Modern Parallel Vector Systems. High Performance Computing for Computational Science, p. 490 (LNCS 4395).

LBNL/PUB-960. J. Srinivasan (2006). An Evaluation of the EverGrid Deja Vu Checkpoint/Restart Software.

The STAR Collaboration (inc. D. Olsen) (2006). Longitudinal double-spin asymmetry and cross section for inclusive jet production in polarized proton collisions at sqrt(s) = 200 GeV. Phys. Rev. Lett. 97, 252001.

The STAR Collaboration (inc. D. Olsen) (2006). Neutral kaon interferometry in Au+Au collisions at sqrt(sNN) = 200 GeV. Phys. Rev. C 74, 054902.

The STAR Collaboration (inc. D. Olsen) (2006). The Multiplicity dependence of inclusive pt spectra from p-p collisions at sqrt(s) = 200 GeV. Phys. Rev. D 74, 032006.

The STAR Collaboration (inc. D. Olsen) (2006). Identified baryon and meson distributions at large transverse momenta from Au+Au collisions at sqrt(sNN) = 200 GeV. Phys. Rev. Lett. 97, 152301.

The STAR Collaboration (inc. D. Olsen) (2006). Direct observation of dijets in central Au+Au collisions at sqrt(sNN)  = 200 GeV. Phys. Rev. Lett. 97, 162301.

The STAR Collaboration (inc. D. Olsen) (2006). Forward neutral pion production in p+p and d+Au collisions at sqrt(sNN) = 200 GeV. Phys. Rev. Lett. 97, 152302.

H. Wang, D.E. Skinner, and M. Thoss (2006). Calculation of reactive flux correlation functions for systems in a condensed phase environment: A multilayer multiconfiguration time-dependent Hartree approach. J. Chem. Phys. 125, 174502.

2005

LBNL-58927. A. Aspuru-Guzik, V. Batista, E. W. Bethel, J. D. Borrill, J. Chen, P. Colella, D. J. Dean, T. DeBoni, D. Donzis, S. Ethier, A. Friedman, A. Harrison, E. Hawkes, M. Head-Gordon, B. E. Hingerty, S. C. Jardin, Y. Jung, D. Keyes, W. A. J. Lester, F. Lui, M. Mavrikakis, A. Mezzacappa, D. Olson, K. Refson, C. Ren, D. Rotman, R. Ryne, V. Sankaran, C. Sovinec, D. Spong, G. Sposito, G. M. Stocks, R. Sugar, D. Swesty, H. Wang, V. Wayland, and P. K. Yeung (2005). DOE Greenbook: Needs and Directions in High Performance Computing for the Office of Science. A Report from the NERSC User Group.

LBNL-58246. D. H. Bailey and J. M. Borwein (2005). Effective Error Bounds in Euler-Maclaurin-Based Quadrature Schemes. Mathematics of Computation.

LBNL-58190. J. H. Chen, R. Sankaran, E. R. Hawkes J. H. Sutherland D. E. Skinner (2005) 2005 Joule Software Effectiveness Study of S3D Applied to the INCITE Goal [link]

LBNL-57582. Horst D. Simon, William T. C. Kramer, David H. Bailey, Michael J. Banda, E. Wes Bethel, Jonathon T. Carter, James M. Craw, William J. Fortney, John A. Hules, Nancy L. Meyer, Juan C. Meza, Esmond G. Ng, Lynn E. Rippe, William C. Saphir, Francesca Verdier, Howard A. Walter, Katherine A. Yelick (2005). Science-Driven Computing: NERSC's Plan for 2006-2010.
http://www-library.lbl.gov/docs/LBNL/575/82/PDF/LBNL-57582.pdf

LBNL-57491. D. H. Bailey and J. M. Borwein (2005). Highly Parallel, High-Precision Numerical Integration. In SC2005, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/574/91/PDF/LBNL-57491.pdf

LBNL-57490. D. H. Bailey and J. M. Borwein (2005). Experimental Mathemataics: Examples, Methods and Implications. Notices of the American Mathematical Society 52 (5), 502-514. http://www-library.lbl.gov/docs/LBNL/574/90/PDF/LBNL-57490.pdf

LBNL-57581. D. H. Bailey, J. M. Borwein, and D. M. Bradley (2005). Experimental Determination of Apery-Like Identities for Zeta(2n+2). Experimental Mathematics.

LBNL-58247. D. H. Bailey and A. M. Frolov (2005). Positron Annihilation in the Bipositronium Ps2. Physical Review A 72 (014501), 014501(1-4). http://www-library.lbl.gov/docs/LBNL/582/47/PDF/LBNL-58247.pdf

LBNL-53656. D. H. Bailey and M. Misiurewicz (2005). A Strong Hot Spot Theorem. Proceedings of the American Mathematical Society 134, 2495-2501. http://www-library.lbl.gov/docs/LBNL/536/56/PDF/LBNL-53656_Journal.pdf

LBNL-57488. D. H. Bailey and A. Snavely (2005). Performance Modeling: Understanding the Present and Predicting the Future. In Euro-Par 2005, Lisbon, Portugal. http://www-library.lbl.gov/docs/LBNL/574/88/PDF/LBNL-57488.pdf

LBNL-58001. J. Borrill, J. Carter, L. Oliker, D. Skinner, and R. Biswas (2005). Integrated Performance Monitoring of a Cosmology Application on Leading HEC Platforms. In THE 2005 INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING (ICPP-05), edited by L. N. Olav Lynse, IEEE Computer Society, Univ. of Oslo, Norway, 00. http://www-library.lbl.gov/docs/LBNL/580/01/PDF/LBNL-58001.pdf | http://www-library.lbl.gov/

LBNL-59304. S. Campbell (2005). How to Think About Security Failures. Communications of the ACM 49 (1), 37-39.

LBNL-58004. J. Carter, L. Oliker, and J. Shalf (2005). Performance Evaluation of Plasma Physics and Astrophysics Applications on Modern Parallel Vector Systems. In VECPAR'06 7th International Conference on High Performance Computing for Computational Science, edited by J. D. M. Daydé, V. Hernandez and J.M.L.M. Palma, Springer, Rio de Janeiro, Brazil.

LBNL-58002. J. Carter, M. Soe, L. Oliker, Y. Tsuda, G. Vahala, L. Vahala, and A. Macnab (2005). Magnetohydrodynamic Turbulence Simulations on the Earth Simulator Using the Lattice Boltzmann Method. In Conference on High Performance Computing, Networking and Storage, edited by B. B. Jeff Kuehn, IEEE Computer Society Press, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/580/02/PDF/LBNL-58002.pdf | http://www-library.lbl.gov/docs/LBNL/580/02/SRC/LBNL-58002.doc

LBNL-57500. J. A. Greenough, B. R. de Supinski, R. K. Yates, C. A. Rendleman, D. Skinner, V. Beckner, M. Lijewski, J. Bell, and J. C. Sexton (2005). Performance of a Block Structured, Hierarchical Adaptive Mesh Refinement Code on the 64k Node IBM BlueGene/L Computer. In SC|05 International Conference for High Performance Computing Networking and Storage, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/575/00/PDF/LBNL-57500.pdf

LBNL-57369. J. Hules, J. Bashor, L. Yarris, J. McCullough, P. Preuss, and W. Bethel (2005). NERSC Annual Report 2004. http://www-library.lbl.gov/docs/LBNL/573/69/PDF/LBNL-57369.pdf

LBNL-58868. W. Kramer, J. Shalf, and E. Strohmaier (2005). The NERSC Sustained System Performance (SSP) Metric. http://www-library.lbl.gov/docs/LBNL/588/68/PDF/LBNL-58868.pdf

LBNL-57493. P. Luszczek, J. J. Dongarra, D. Koester, R. Rabenseifner, B. Lucas, J. Kepner, J. McCalpin, D. Bailey, and D. Takahashi (2005). Introduction to the HPC Challenge Benchmark Suite. In SC2005, Seattle, WA. http://www-library.lbl.gov/docs/LBNL/574/93/PDF/LBNL-57493.pdf

LBNL-58243. R. Ryne, D. Abell, A. Adelmann, J. Amundson, C. Bohn, J. Cary, P. Colella, D. Dechow, V. Decyk, A. Dragt, R. Gerber, S. Habib, D. Higdon, T. Katsouleas, K.-L. Ma, P. McCorquodale, D. Mihalcea, C. Mitchell, W. Mori, C. T. Mottershead, F. Neri, I. Pogorelov, J. Qiang, R. Samulyak, D. Serafini, J. Shalf, C. Siegerist, P. Spentzouris, P. Stoltz, B. Terzic, M. Venturini, and P. Walstrom (2005). SciDAC Advances and Applications in Computational Beam Dynamics. In SciDAC 2005, edited by L. C. Graham Douglas, IOPP, San Francisco, CA.

LBNL-57582. H. D. Simon, W. T. C. Kramer, D. H. Bailey, M. J. Banda, E. W. Bethel, J. M. Craw, W. J. Fortney, J. A. Hules, N. L. Meyer, J. C. Meza, E. G. Ng, L. E. Rippe, W. C. Saphir, F. Verdier, H. A. Walter, and K. A. Yelick (2005). Science-Driven Computing: NERSC's Plan for 2006-2010. http://www-library.lbl.gov/docs/LBNL/575/82/PDF/LBNL-57582.pdf

LBNL/PUB-5503. D. Skinner (2005). Performance monitoring of parallel scientific applications. http://www-library.lbl.gov/docs/PUB/5503/PDF/PUB-5503.pdf | http://www-library.lbl.gov/docs/PUB/5503/PDF/PUB-5503.doc

LBNL/PUB-904 (2006). D. Skinner, F. Verdier, H. Anand, J. Carter, M. Durst, and R. Gerber (2005). Parallel Scaling Characteristics of Selected NERSC User Project Codes. http://www-library.lbl.gov/docs/PUB/904/PDF/PUB-904_2006.pdf | http://www-library.lbl.gov/docs/PUB/904//SRC/PUB-904_2006.doc

LBNL-58768. K. Stockinger, K. Wu, S. Campbell, S. Lau, M. Fisk, E. Gavrilov, A. Kent, C. E. Davis, R. Olinger, R. Young, J. Prewett, P. Weber, T. P. Caudell, E. W. Bethel, and S. Smith (2005). Network Traffic Analysis With Query Driven VisualizationSC 2005 HPC Analytics Results. In Supercomputing 2005, ACM - Association for Computing Machinery, Seattle, Washingoton. http://www-library.lbl.gov/docs/LBNL/587/68/PDF/LBNL-58768.pdf

LBNL-58914. K. Yelick, S. Kamil, W. T. Kramer, L. Oliker, J. Shalf, H. Shan, and E. Strohmaier (2005). Science Driven Supercomputing Architectures: Analyzing Architectural Bottlenecks with Applications and Benchmark Probes. http://www-library.lbl.gov/docs/LBNL/589/14/PDF/LBNL-58914.pdf

Horst Simon, William Kramer, William Saphir, John Shalf, David Bailey, Leonid Oliker, Michael Banda, C. William McCurdy, John Hules, Andrew Canning, Marc Day, Philip Colella, David Serafini, Michael Wehner, and Peter Nugent, "Science-Driven System Architecture: A New Process for Leadership Class Computing," Journal of the Earth Simulator, Vol. 2, January 2005.

2004

Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, and Stephane Ethier. Scientific Computations on Modern Parallel Vector Systems (draft). In SC2004 High Performance Computing, Networking and Storage Conference; Pittsburg, PA; Nov 6 - 12. 2004.

LBNL-56306. Strohmaier, E. and H. Shan (2004). Architecture independent performance characterization and benchmarking for scientific applications. MASCOTS 2004, Volendam, The Netherlands.

LBNL-55724. Kramer, W. T. C., A. Shoshani, D. A. Agarwal, B. R. Draney, G. Jin, G. F. Butler and J. A. Hules (2004). Deep scientific computing requires deep data. IBM Research and Development 48(2). http://www.research.ibm.com/journal/rd/482/kramer.html

LBNL-55353. Co, C. S., A. Friedman, D. P. Grote, J.-L. Vay, E. W. Bethel and K. I. Joy (2004). Interactive methods for exploring particle simulation data. IEEE Visualization 2004, Austin, TX. http://www-library.lbl.gov/docs/LBNL/553/53/PDF/LBNL-55353.pdf

LBNL-54881. Otoo, E., D. Rotem and A. Romosan (2004). Optimal file-bundle caching algorithms for data-grids. SC2004 High Performance Computing, Networking and Storage Conference, Pittsburg, PA. http://www-library.lbl.gov/docs/LBNL/548/81/PDF/LBNL-54881.pdf

LBNL-54880. Otoo, E. J., D. Rotem and S. Seshadri (2004). Efficient algorithms for multi-file caching. 15th International Conference on Database and Expert Systems Applications, Zaragoza, Spain. http://www-library.lbl.gov/docs/LBNL/548/80/PDF/LBNL-54880.pdf

LBNL-54267. Hules, J., R. Albert, J. Bashor, C. Jones, P. Preuss and L. Yarris (2004). NERSC Annual Report 2003.

LBNL-54254. Skinner, D. (2004). Scaling up parallel scientific applications on the IBM SP. http://www-library.lbl.gov/docs/LBNL/542/54/PDF/LBNL-54254.pdf

LBNL-52456 (2003). Butler, G. F., B. W. P., R. C. Lee, C. E. Tull, M. L. Welcome and W. C. L. (2004). The global unified parallel file system (GUPFS) project: FY 2003 activities and results. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456_2003.pdf

LBNL/PUB-5500 (2004). Horst Simon, William Kramer, William Saphir, John Shalf, David Bailey, Leonid Oliker, Michael Banda, C. William McCurdy, John Hules, Andrew Canning, Marc Day, Philip Colella, David Serafini, Michael Wehner, and Peter Nugent. National Facility for Advanced Computational Science: A Sustainable Path to Scientific Discovery.

LBNL/PUB-897 Feb. 2004. Bashor, J. M. (2004). NERSC News. http://www-library.lbl.gov/docs/PUB/897/PDF/PUB-897_Feb._2004.pdf

LBNL/PUB-894. Shalf, J., E. W. Bethel and C. Siegerist (2004). Personal Display Wall. http://www-library.lbl.gov/docs/PUB/894/PDF/PUB-894.pdf

LBNL/PUB-893. Siegerist, C., J. Shalf and E. W. Bethel (2004). VisPortal: Increasing Scientific Productivity by Simplifying Access to and Use of Remote Computational Resources. http://www-library.lbl.gov/docs/PUB/893/PDF/PUB-893.pdf

LBNL/PUB-892. Siegerist, C., J. Shalf, E. W. Bethel and C. Siegerist (2004). Interactive Remote and Distributed Visualization of Fusion Simulation Results. http://www-library.lbl.gov/docs/PUB/892/PDF/PUB-892.pdf

LBNL/PUB-886 Vol. II. Bethel, E. W., R. Frank, S. Fulcomer, C. Hansen, K. Joy, J. Kohl and D. Middleton (2004). Visual Data Exploration and Analysis. http://www-library.lbl.gov/docs/PUB/886/PDF/PUB-886_Vol._II.pdf

LBID-2512. Simon, H., W. Kramer, W. Saphir, J. Shalf, D. Bailey and L. Oliker (2004). National Energy Research Scientific Computing (NERSC) center: From here to Petaflop/s.

2003

LBNL-54515. Holmes, H. H. (2003). Exploring HPSS bandwidth - NERSC production experience. http://www-library.lbl.gov/docs/LBNL/545/15/PDF/LBNL-54515.pdf

LBNL-54218. Skinner, D. and N. Cardo (2003). An Analysis of Node Asymmetries on seaborg.nersc.gov. http://www-library.lbl.gov/docs/LBNL/542/18/PDF/LBNL-54218.pdf

LBNL-54031 Abs. Shalf, J., M. J. Bennett and G. Bell (2003). Transport requirements for high performance network applications that are NOT FTP. Second International Workshop on Protocols for Fast Long-Distance Networks, Chicago, Illinois. http://www-library.lbl.gov/docs/LBNL/540/31/PDF/LBNL-54031_Abs.pdf

LBNL-53658. Bailey, D. H. (2003). A "hot-spot" proof of normality for the alpha constants.

LBNL-53657. Frolov, A. M. and D. H. Bailey (2003). Highly accurate evaluation of the few-body auxiliary functions and four-body integrals. Journal of Physics B: Atomic, Molecular and Optical Physics 36.

LBNL-53656. Bailey, D. H. and D. J. Rudolph (2003). A strong hot spot theorem.

LBNL-53654. Bailey, D. H., J. M. Borwein, R. E. Crandall and C. Pomerace (2003). On the binary expansions of algebraic numbers. Journal of Number Theory Bordeaux.

LBNL-53652. Bailey, D. H. and X. S. Li (2003). A Comparison of three high-precision quadrature schemes. Real Number Computing Conference, Lyon, France. http://www-library.lbl.gov/docs/LBNL/536/52/PDF/LBNL-53652.pdf

LBNL-53531. Gerber, R. A. (2003). Parallel performance of the XL Fortran random_number intrinsic function on Seaborg. http://www-library.lbl.gov/docs/LBNL/535/31/PDF/LBNL-53531.pdf

LBNL-53023. Otoo, E. J. and A. Shoshani (2003). Accurate modeling of cache replacement policies in a Data-Grid. Twentieth IEEE/Eleventh NASA Goddard Conference on Mass Storage System & Technologies, San Diego, California, IEEE Computer Society. http://www-library.lbl.gov/docs/LBNL/530/23/PDF/LBNL-53023.pdf

LBNL-52940. Bethel, W., C. Siegerist, J. Shalf, P. Shetty, T. J. Jankun-Kelly, O. Kreylos and K.-L. Ma (2003). VisPortal: Deploying grid-enabled visualization tools through a web-portal interface. Workshop on Advanced Collaborative Environments (http://www-unix.mcs.anl.gov/fl/events/wace2003/), Seattle Washington, WACE. http://www-library.lbl.gov/docs/LBNL/529/40/PDF/LBNL-52940.pdf

LBNL-52539. Shah, N., O. Couronne, L. A. Pennacchio, M. Brudno, S. Batzoglou, W. Bethel, E. M. Rubin, B. Hamann and I. Dubchak (2003). Phylo-VISTA: An interactive visualization tool for multiple DNA sequence alignments. Bioinformatics.

LBNL-52456 (2003). Butler, G. F., B. W. P., R. C. Lee, C. E. Tull, M. L. Welcome and W. C. L. (2004). The global unified parallel file system (GUPFS) project: FY 2003 activities and results. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456_2003.pdf

LBNL-52456. Butler, G. F., R. C. Lee and M. L. Welcome (2003). The global unified parallel file system (GUPFS) project: FY 2002 activities and results. http://www-library.lbl.gov/docs/LBNL/524/56/PDF/LBNL-52456.pdf

LBNL-52291. Kramer, W. T. C. and C. Ryan (2003). Performance variability of highly parallel architectures. International Conference on Computational Science 2003, Melbourne, Australia & St. Petersburg, Russia. http://www-library.lbl.gov/docs/LBNL/522/91/PDF/LBNL-52291.pdf

LBNL-52025. Chen, J.-L., Z. Bai, B. Hamann and T. J. Ligocki (2003). A normalized-cut algorithm for hierarchical vector field data segmentation. SPIE/IS&T Visual Data Exploration and Analysis, San Jose, CA. http://www-library.lbl.gov/docs/LBNL/520/25/PDF/LBNL-52025.pdf

LBNL-52024. Chen, J.-L., Z. Bai and T. Ligocki (2003). Segmentation of piecewise linear vector fields. Geometric Modeling for Scientific Visaulization. T. U. o. C. Guido Brunnett, Germany, Springer-Verlag. http://www-library.lbl.gov/docs/LBNL/520/24/PDF/LBNL-52024.pdf

LBNL-51979. Hules, J. (2003). NERSC Annual Report 2002. http://www-library.lbl.gov/docs/LBNL/519/79/PDF/LBNL-51979.pdf

LBNL-51940. Grcar, J. F. (2003). Differential equivalence classes for metric projections and optimal backward errors. Transactions of the American Mathematical Society. http://www-library.lbl.gov/docs/LBNL/519/40/PDF/LBNL-51940.pdf

LBNL-51897. Pinar, A. and C. L. Liu (2003). Compacting sequences with invariant transition frequencies. ACM Transactions on Design Automation of Electronic Systems 8(2).

LBNL-51880. Kasen, D., P. Nugent, L. Wang, D. A. Howell, J. C. Wheeler, P. Hoeflich, D. Baade, E. Baron and P. H. Hauschildt (2003). Analysis of the flux and polarization spectra of the type Ia supernova SN 2001el: Exploring the geometry of the high-velocity Ejecta. The Astrophysical Journal 593(2pt1).

2002

LBNL-53651. Bailey, D. H., H. Yozo, X. S. Li and B. Thompson (2002). ARPREC: An arbitrary precision computation package. http://www-library.lbl.gov/docs/LBNL/536/51/PDF/LBNL-53651.pdf

LBNL-53650. Bailey, D. H. (2002). A reclusive kind of science. Computing in Science and Engineering 4(5).

LBNL-51878. Baron, E., P. E. Nugent, D. Branch, P. H. Hauschildt, M. Turatto and E. Cappellaro (2002). Determination of Primordial Metallicity and Mixing in the Type IIP Supernova 1993W. Astrophysical Journal 586(2pt1).

LBNL-51866. Aykanat, C., A. Pinar and U. V. Catalyurek (2002). Permuting sparse rectangular matrices into block-diagonal form. Society for Industrial and Applied Mathematics - Journal on Scientific Computing 25(6).

LBNL-51865. Pinar, A. and B. Hendrickson (2002). Exploiting Flexibly Assignable Work to Improve Load Balance. Fourteenth ACM Symposium on Parallel Algorithms and Architectures (SPAA), Winnipeg, Manitoba, Canada. http://www-library.lbl.gov/docs/LBNL/518/65/PDF/LBNL-51865.pdf | http://www-library.lbl.gov/docs/LBNL/518/65/PS/LBNL-51865.ps

LBNL-51864. Pinar, A. and C. L. Liu (2002). Sequence Compaction to Preserve Transition Frequencies. http://www-library.lbl.gov/docs/LBNL/518/64/PDF/LBNL-51864.pdf | http://www-library.lbl.gov/docs/LBNL/518/64/PS/LBNL-51864.ps

LBNL-51862. Pinar, A. and C. Aykanat (2002). Fast Optimal Load Balancing Algorithms for 1D Partitioning. Journal of Parallel and Distributed Computing.

LBNL-51791. Stockinger, K., K. Wu and A. Shoshani (2002). Strategies for processing ad hoc queries on large data warehouses. ACM Fifth International Workshop on Data Warehousing and OLAP, McLean, VA.

LBNL-51725 (2001). Kramer, W. T. (2002). How are we doing? A self-assessment of the quality of services and systems at NERSC (2001). http://www-library.lbl.gov/docs/LBNL/517/25/PDF/LBNL-51725.pdf

LBNL-51723. Shalf, J. and E. W. Bethel (2002). How the Grid will affect the architecture of future visualization systems. IEEE Computer Graphics and Applications 23(2).

LBNL-51564. Bethel, E. W. and J. Shalf (2002). Cactus and Visapult: An ultra-high performance grid-distributed visualization architecture using connectionless protocols. IEEE Computer Graphics and Applications.

LBNL-51563. Jankun-Kelly, T. J., O. Kreylos, J. Shalf, K.-L. Ma, B. Hamann, K. Joy and E. W. Bethel (2002). Deploying web-based visual exploration tools on the grid. IEEE Computer Graphics and Applications.

LBNL-51536. Benitez, N., A. Riess, P. Nugent, M. Dickinson, R. Chornock and A. V. Filippenko (2002). The magnification of SN 1997ff, the farthest known supernova. Astrophysical Journal Letters 577(1 Pt 2).

LBNL-51150. Chevassut, O. (2002). Authenticated group Diffie-Hellman key exchange: theory and practice. Sciences Appliquees. Louvain-la-Neuve, Belgium, Universite Catholique de Louvain. http://www-library.lbl.gov/docs/LBNL/511/50/PDF/LBNL-51150.pdf

LBNL-51111. Allen, G., T. Goodale, M. Russell, E. Seidel and J. Shalf (2002). Classifying and enabling grid applications. Grid Computing: Making the Global Infrastructure a Reality. G. F. Fran Berman, Tony Hey, John Wiley & Sons, Ltd. http://www-library.lbl.gov/docs/LBNL/511/11/PDF/LBNL-51111.pdf

LBNL-51096. Minion, M. L. (2002). Semi-implicit spectral deferred correction methods for ordinary differential equations.

LBNL-50778. He, Y. H. and C. H. Q. Ding (2002). Multi Program-Components Handshaking (MPH) Utility Version 3 User's Manual. http://www-library.lbl.gov/docs/LBNL/507/78/PDF/LBNL-50778.pdf

LBNL-50775. Bresson, E., O. Chevassut and D. Pointcheval (2002). The group Diffie-Hellman problems. Workshop on Selected Areas in Cryptography (SAC 2002), St. John's, Newfoundland, Canada. http://www-library.lbl.gov/docs/LBNL/507/75/PDF/LBNL-50775.pdf | http://www-library.lbl.gov/docs/LBNL/507/75/PS/LBNL-50775.ps

LBNL-50635. Grcar, J. F. (2002). A matrix lower bound. Linear Algebra and Its Applications. http://www-library.lbl.gov/docs/LBNL/506/35/PDF/LBNL-50635.pdf

LBNL-50634. Grcar, J. F. (2002). Min-max identities on boundaries of convex sets around the origin. Journal of Convex Analysis. http://www-library.lbl.gov/docs/LBNL/506/34/PDF/LBNL-50634.pdf

LBNL-50427. Agarwal, D., K. Jackson and M. Thompson (2002). Securing collaborative environments. Second Workshop on Advanced Collaborative Environments, Edinburgh, Scotland. http://www-library.lbl.gov/docs/LBNL/504/27/PDF/LBNL-50427.pdf

LBNL-50418. Agarwal, D., C. McParland and M. Perry (2002). Supporting collaborative computing and interaction. Grace Hopper Celebration of Women in Computing 2002, Vancouver, Canada. http://www-library.lbl.gov/docs/LBNL/504/18/PDF/LBNL-50418.pdf

LBNL-50379. Mitchell, R. C., E. Baron, D. Branch, P. H. Hauschildt, P. E. Nugent, P. Lundqvist, S. Blinnikov and C. S. J. Pun (2002). Detailed spectroscopic analysis of SN 1987A: The distance to the LMC using the SEAM method. Astrophysical Journal 574.

LBNL-50375. Nugent, P., A. Kim and S. Perlmutter (2002). K-corrections and extinction corrections for Type Ia supernovae. Publications of the Astronomical Society of the Pacific 114.

LBNL-50237. Shalf, J. and E. W. Bethel (2002). Cactus and Visapult: A case study of ultra-high performance distributed visualization using connectionless protocols. SC2002, Baltimore Maryland. http://www-library.lbl.gov/docs/LBNL/502/37/PDF/LBNL-50237.pdf

LBNL-49955 Abs. Shalf, J. M. and E. W. Bethel (2002). HPC graphics and visualization, not games, drive advances in networked graphics technology. Siggraph 2002, San Antonio, TX, USA. http://www-library.lbl.gov/docs/LBNL/499/55/PDF/LBNL-49955_Abs.pdf

LBNL-49954. Kreylos, O., G. H. Weber, E. W. Bethel, J. M. Shalf, B. Hamann and K. I. Joy (2002). Remote interactive direct volume rendering of AMR data. IEEE Visualization 2002, Boston, MA, USA. http://www-library.lbl.gov/docs/LBNL/499/54/PDF/LBNL-49954.pdf

LBNL-49659. Duell, J., P. H. Hargrove and E. S. Roman (2002). Requirements for Linux Checkpoint/Restart. http://www-library.lbl.gov/docs/LBNL/496/59/PDF/LBNL-49659.pdf

LBNL-49634. Kim, A. G. and P. E. Nugent (2002). Photon vs energy magnitude systems and the measurement of the cosmological parameters. Publications of the Astronomical Society of the Pacific.

LBNL-49627. Wu, K., E. J. Otoo and A. Shoshani (2002). Compressing bitmap indexes for faster search operations. 14th International Conference on Scientific and Statistical Database Management, Edinburgh, Scotland. http://www-library.lbl.gov/docs/LBNL/496/27/PDF/LBNL-49627.pdf

LBNL-49512. Thompson, M. R., S. S. Mudumbai, A. Essiari and W. Chin (2002). Authorization policy in a PKI environment. 1st Annual NIST PKI Research Workshop, NIST, Gaithersburg, MD, NIST. http://www-library.lbl.gov/docs/LBNL/495/12/PDF/LBNL-49512.pdf

LBNL-49479. Bresson, E., O. Chevassut and D. Pointcheval (2002). Group Diffie-Hellman key exchange secure against dictionary attacks. Asiacrypt, Queenstown, New Zealand.

LBNL-49388. Li, X. S. and J. W. Demmel (2002). SuperLU_DIST: A scalable distributed-memory sparse direct solver for unsymmetric linear systems. ACM Transaction on Mathematical Software.

LBNL-49087. Bresson, E., O. Chevassut and D. Pointcheval (2002). Dynamic Group Diffie-Hellman Key Exchange under standard assumptions. Eurocrypt 2002, Amsterdam, The Netherlands. http://www-library.lbl.gov/docs/LBNL/490/87/PDF/LBNL-49087.pdf | http://www-library.lbl.gov/docs/LBNL/490/87/PS/LBNL-49087.ps

LBNL-48384. Wang, L.-W. (2002). Generating charge densities of fullerenes. Physical Review B 65(15).

LBNL/PUB-868. Carter, J. T. (2002). An assessment of the impact of decommissioning the Cray SV1 systems at NERSC. http://www-library.lbl.gov/docs/PUB/868/PDF/PUB-868.pdf | http://www-library.lbl.gov/docs/PUB/868/SRC/PUB-868.doc

LBNL/PUB-5483. McCurdy, C. W., R. Stevens, H. Simon, W. Kramer, D. Bailey, W. Johnston, C. Catlett, R. Lusk, T. Morgan, J. Meza, M. Banda, J. Leighton and J. Hules (2002). Creating science-driven computer architecture: A new path to scientific leadership. http://www-library.lbl.gov/docs/PUB/5483/PDF/PUB-5483.pdf

LBNL/PUB-5465 Vol. 2. Kramer, W., W. Bethel, J. Craw, B. Draney, W. Fortney, B. Gorda, W. Harris, N. Meyer, E. Ng, F. Verdier, H. Walter and T. Welcome (2002). NERSC Strategic Implementation Plan 2002-2006. http://www-library.lbl.gov/docs/PUB/5465/PDF/PUB-5465_Vol_2.pdf

2001

LBNL-51039. Allen, G., E. Seidel and J. Shalf (2001). Scientific Computing on the Grid. Byte Magazine.

LBNL-49330. Holmes, H. (2001). Exploration of cache behavior using HPSS per-file transfer logs. http://www-library.lbl.gov/docs/LBNL/493/30/PDF/LBNL-49330.pdf

LBNL-49327. Cholia, S. and N. Meyer (2001). A beta test of linear tape-open (LTO) ultrium data storage technology. http://www-library.lbl.gov/docs/LBNL/493/27/PDF/LBNL-49327.pdf

LBNL-49186. Hules (editor), J. (2001). NERSC 2001 Annual Report. http://www-library.lbl.gov/docs/LBNL/491/86/PDF/LBNL-49186.pdf

LBNL-49126. Berket, K., D. A. Agarwal and O. Chevassut (2001). A practical approach to the intergroup protocols. Future Generation Computer Systems.

LBNL-49048. Ding, C. H. Q., X. He, H. Zha and H. D. Simon (2001). Self-aggregation in scaled principal component space. http://www-library.lbl.gov/docs/LBNL/490/48/PDF/LBNL-49048.pdf | http://www-library.lbl.gov/docs/LBNL/490/48/PS/LBNL-49048.ps

LBNL-48979. Gaeke, B. G., P. Husbands, H. J. Kim, X. S. Li, H. J. Moon, L. Oliker, K. A. Yelick and R. Biswas (2001). Memory-intensive benchmarks: IRAM vs. cache-based machines. International Parallel and Distributed Processing Symposium, Fort Lauderdale, Florida. http://www-library.lbl.gov/docs/LBNL/489/79/PDF/LBNL-48979.pdf

LBNL-48975 Abs. Wu, K., E. Otoo and A. Shoshani (2001). A performance comparison of bitmap indexes. ACM CIKM 2001 Tenth International Conference on Information and Knowledge Management, Atlanta, Georgia.

LBNL-48968. Amestoy, P. R., I. S. Duff, J.-Y. L'Excellent and X. S. Li (2001). Impact of the implementation of MPI point-to-point communications on the performance of two general sparse solvers. Parallel Computing.

LBNL-48845. Wang, L.-W. (2001). Mask function real space implementations of nonlocal pseudopotentials. Physical Review B.

LBNL-48811. Shan, H., J. P. Sing, L. Oliker and R. Biswas (2001). A comparison of three programming models for adaptive applications on the Origin2000. Journal of Parallel and Distributed Computing.

LBNL-48582. Baertschy, M. and X. Li (2001). Solution of a three-body problem in quantum mechanics using sparse linear algebra on parallel computers. SC2001, Denver, Colorado.

LBNL-48437. Yang, C., P. Raghavan, L. Arrowood, D. W. Noid, B. G. Sumpter and R. E. Tuzun (2001). Large-scale normal coordinate analysis on distributed memory parallel systems. International Journal of High Performance Computing Applications.

LBNL-48336. Bethel, E. W., S. J. Bastacky and K. S. Schwartz (2001). Interactive stereo electron microscopy enhanced with virtual reality. IS&T/SPIE Electronic Imaging, The Engineering Reality of Virtual Reality 2002, San Jose, CA, Society for Optical Engineering. http://www-library.lbl.gov/docs/LBNL/483/36/PDF/LBNL-48336.pdf

LBNL-48202. Bresson, E., O. Chevassut and D. Pointcheval (2001). Provably authenticated group Diffie-Hellman key exchange - The dynamic case (Extended abstract). Asiacrypt 2001, Australia. http://www-library.lbl.gov/docs/LBNL/482/02/PDF/LBNL-48202.pdf | http://www-library.lbl.gov/docs/LBNL/482/02/PS/LBNL-48202.ps

LBNL-47971. He, X., H. Zha, C. H. Q. Ding and H. D. Simon (2001). Web document clustering using hyperlink structures. http://www-library.lbl.gov/docs/LBNL/479/71/PDF/LBNL-47971.pdf | http://www-library.lbl.gov/docs/LBNL/479/71/PS/LBNL-47971.ps

LBNL-47970. Zha, H., X. He, C. Ding, M. Gu and H. D. Simon (2001). Bipartite graph partitioning and data clustering. http://www-library.lbl.gov/docs/LBNL/479/70/PDF/LBNL-47970.pdf | http://www-library.lbl.gov/docs/LBNL/479/70/PS/LBNL-47970.ps

LBNL-47930. Ding, C. H. Q. and Y. He (2001). MPH: A library for distributed multi-component environment. Supercomputing 2001, Denver, CO, ACM. http://www-library.lbl.gov/docs/LBNL/479/30/PDF/LBNL-47930.pdf | http://www-library.lbl.gov/docs/LBNL/479/30/PS/LBNL-47930.ps

LBNL-47929. Ding, C. H. Q. and Y. He (2001). A ghost cell expansion method for reducing communications in solving PDE problems. Supercomputing 2001 (SC2001), Denver, CO, ACM. http://www-library.lbl.gov/docs/LBNL/479/29/PDF/LBNL-47929.pdf | http://www-library.lbl.gov/docs/LBNL/479/29/PS/LBNL-47929.ps

LBNL-47892. Jin, G., G. Yang, B. Crowley and D. Agarwal (2001). Network Characterization Service (NCS). 10th IEEE Symposium on High Performance Distributed Computing, San Francisco, CA, IEEE. http://www-library.lbl.gov/docs/LBNL/478/92/PDF/LBNL-47892.pdf

LBNL-47807. Wu, K., E. Otoo and A. Shoshani (2001). Compressed bitmap indices for efficient query processing. http://www-library.lbl.gov/docs/LBNL/478/07/PDF/LBNL-47807.pdf

LBNL-47806. Shan, H., J. P. Singh, L. Oliker and R. Biswas (2001). Message passing vs. shared address space on a cluster of SMPs. The 15th International Parallel and Distributed Processing Symposium, San Francisco, California. http://www-library.lbl.gov/docs/LBNL/478/06/PDF/LBNL-47806.pdf | http://www-library.lbl.gov/docs/LBNL/478/06/PS/LBNL-47806.ps

LBNL-47805. Biswas, R. and L. Oliker (2001). Ordering sparse matrices for cache-based systems. Tenth SIAM Conference on Parallel Processing for Scientific Computing, Portmouth, Virginia. http://www-library.lbl.gov/docs/LBNL/478/05/PDF/LBNL-47805.pdf | http://www-library.lbl.gov/docs/LBNL/478/05/PS/LBNL-47805.ps

LBNL-47792. Drummond, L. A., J. Demmel, C. R. Mechoso, H. Robinson, K. Sklower and J. A. Spahr (2001). A data broker for distributed computing environments. 2001 International Conference on Computational Science (ICCS 2001), San Francisco, CA.

LBNL-47727. Johnston, W. E., K. Jackson and S. Talwar (2001). Security considerations for computational and data grids. 10th International Symposium on High Perfrmance Distributed Computing, San Francisco. http://www-library.lbl.gov/docs/LBNL/477/27/PDF/LBNL-47727.pdf | http://www-library.lbl.gov/docs/LBNL/477/27/SRC/LBNL-47727.doc

LBNL-47712. Kramer, W. T. (2001). How are we doing? A self-assessment of the quality of services and systems at NERSC (Oct. 1, 1999 - Sept. 30, 2000). http://www-library.lbl.gov/docs/LBNL/477/12/PDF/LBNL-47712.pdf | http://www-library.lbl.gov/docs/LBNL/477/12/SRC/LBNL-47712.doc

LBNL-47611. Tierney, B. L., D. Gunter, J. Lee and M. Stoufer (2001). Enabling network-aware applications. High Performance Distributed Computing, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/476/11/PDF/LBNL-47611.pdf

LBNL-47585. Bresson, E., O. Chevassut, D. Pointcheval and J.-J. Quisquater (2001). Provably authenticated group Diffie-Hellman key exchange. Eighth ACM Conference on Computer and Communications Security (CCS-8), Philadelphia, Pennsylvania, USA, ACM Press.

LBNL-47567. Berket, K., D. A. Agarwal, P. M. Melliar-Smith and L. E. Moser (2001). Overview of the InterGroup protocols. 2001 International Conference on Computational Science, San Francisco, CA. http://www-library.lbl.gov/docs/LBNL/475/67/PDF/LBNL-47567.pdf | http://www-library.lbl.gov/docs/LBNL/475/67/PS/LBNL-47567.ps

LBNL-47518. Agarwal, D., B. L. Tierney, D. Gunter, J. Lee and W. Johnston (2001). Network aware distributed applications. Workshop on New Visions for Large-Scale Networks: Research and Applications, Vienna, VA. http://www-library.lbl.gov/docs/LBNL/475/18/PDF/LBNL-47518.pdf

LBNL-47372. Gilbert, J. R., X. S. Li, E. G. Ng and B. W. Peyton (2001). Computing row and column counts for sparse QR and LU factorisation. BIT.

LBNL-47274. Kramer, W. T. C., T. Toole, C. Fisher, J. Dugan, D. Wheeler, W. R. Wing, W. Nickless, G. Goddard, S. Corbato, E. P. Love, P. Daspit, H. Edwards, L. Mercer, D. Koester, B. Decina, E. Dart, P. Reisinger, R. Kurihara, M. J. Zekauskas, E. Plesset, J. Wulf, D. Luce, J. Rogers, R. Duncan, J. Mauth and S. Team (2001). Building and measuring a high performance network architecture. http://www-library.lbl.gov/docs/LBNL/472/74/PDF/LBNL-47274.pdf

LBNL/PUB-851. Kaltschmidt, R., J. Bashor and J. Hules (2001). A virtual tour of NERSC at the Berkeley Lab Oakland Scientific Facility.

LBNL/PUB-5465 Vol. 1 Rev. 1. McCurdy, C. W., H. D. Simon, W. T. C. Kramer, W. E. Johnston, R. F. Lucas and D. H. Bailey (2001). Strategic Proposal - National Energy Research Scientific Computing Center, FY2002-FY2006. http://www-library.lbl.gov/docs/LBNL/PUB/546/5/PDF/LBNL/PUB-5465_Vol_1.pdf

LBNL/PUB-3161. Wu, K., E. J. Otoo, A. Shoshani and H. Nordberg (2001). Notes on design and implementation of compressed bit vectors. http://www-library.lbl.gov/docs/PUB/3161/PDF/PUB-3161.pdf

2000

LBNL-48575. Bell, J., A. Chorin and W. Y. Crutchfield (2000). Stochastic optimal prediction with application to averaged euler equations. 7th National Conference on Computation of Fluid Mechanics, Pingtung, Taiwan.

LBNL-48559. Ding, C. H. Q. and I. Dubchak (2000). Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 17(4).

LBNL-47804. Oliker, L., R. Biswas, H. Shan and J. P. Sing (2000). Design strategies for irregularly adapting parallel applications. Tenth SIAM Conference on Parallel Processing for Scientific Computing, Portsmouth, Virginia. http://www-library.lbl.gov/docs/LBNL/478/04/PDF/LBNL-47804.pdf | http://www-library.lbl.gov/docs/LBNL/478/04/PS/LBNL-47804.ps

LBNL-47803. Oliker, L., X. Li, P. Husbands and R. Biswas (2000). Ordering schemes for sparse matrices using modern programming paradigms. Applied Informatics 2001, Innsbruck, Austria. http://www-library.lbl.gov/docs/LBNL/478/03/PDF/LBNL-47803.pdf | http://www-library.lbl.gov/docs/LBNL/478/03/PS/LBNL-47803.ps

LBNL-47478. Xing, E. P., D. M. Wolf, I. Dubchak, S. Spengler, M. Zorn, I. Muchnik and C. Kulikowski (2000). Automatic discovery of sub-molecular sequence domains in multi-aligned sequences: A dynamic programming algorithm for multiple alignment segmentation. http://www-library.lbl.gov/docs/LBNL/474/78/PDF/LBNL-47478.pdf | http://www-library.lbl.gov/docs/LBNL/474/78/SRC/LBNL-47478.doc | http://www-library.lbl.gov/docs/LBNL/474/78/SRC/LBNL-47478_figures.doc

LBNL-47461. Meuer, H. W., E. Strohmaier, J. J. Dongarra and H. D. Simon (2000). TOP500 Supercomputer sites 11/2000. http://www-library.lbl.gov/docs/LBNL/474/61/PDF/LBNL-47461.pdf | http://www-library.lbl.gov/docs/LBNL/474/61/PS/LBNL-47461.ps

LBNL-45239. Modiano, D. and P. Colella (2000). A higher-order embedded boundary method for time-dependent simulation of hyperbolic conservation laws. ASME 2000 Fluids Engineering Division Summer Meeting, Boston, MA. http://www-library.lbl.gov/docs/LBNL/452/39/PDF/LBNL-45239.pdf | http://www-library.lbl.gov/docs/LBNL/452/39/PS/LBNL-45239.ps>Full text(Size 4M)Full text (Size 136K)Full text (Size 287K)

LBNL-45215. Bethel, W. (2000). Visapult: A Prototype Remote and Distributed Visualization Application and Framework. Siggraph 2000, New Orleans, LA, USA, ACM. http://www-library.lbl.gov/docs/LBNL/452/15/PDF/LBNL-45215.pdf

LBNL-45181. Hules (editor), J. A. (2000). NERSC Annual Report 1999.

LBNL-45132. Reichhardt, C., C. J. Olson and N. Gronbech-Jensen (2000). Vortex pinning and dynamics in layered superconductors with periodic pinning arrays. Physica C 341(PT2).

LBNL-45040. He, Y. H. and C. H. Q. Ding (2000). Using accurate arithmetics to improve numerical reproducibility and stability in parallel applications. Journal of Supercomputing 18(3).

LBNL-45039. Hoo, G., K. Jackson and W. Johnston (2000). Design of the STARS network QoS reservation system. Journal of Communications and Networking (Special Issue on QoS).

LBNL-44476. Oliker, L., X. Li, G. Heber and R. Biswas (2000). Ordering unstructured meshes for sparse matrix computations on leading parallel systems. IRREGULAR 2000, Cancun, MEXICO.

LBNL-44359. Menes, R., N. Gronbech-Jensen and P. A. Pincus (2000). Interactions between charged rods near salty surfaces. European Physical Journal E 1(4).

LBNL-42594. Heroux, M., H. D. Simon and A. Koniges (2000). The future of industrial parallel computing. Industrial Strength Parallel Computing. A. E. Koniges, Morgan Kaufmann Publishers.

1999

LBNL-44764. Kolton, A. B., D. Dominguez and N. Gronbech-Jensen (1999). Dynamical ordering in the c-axis in 3D driven vortex lattices. Physica C 341(PT 2).

LBNL-44751. Eastman, P., N. Gronbech-Jensen and S. Doniach (1999). Simulation of protein folding by reaction path annealing. Journal of Chemical Physics 114(8).

LBNL-44750. Reichhardt, C., G. T. Zimanyi and N. Gronbech-Jensen (1999). Phase-locking of vortex lattices interacting with periodic pinning. Physical Review B 61(18).

LBNL-44724. Canning, A., W. Mannstadt and A. J. Freeman (1999). Parallelization of the FLAPW method. Computer Physics Communications 130(3).

LBNL-44700. Kramer, W., F. Verdier, K. Fitzgerald, J. Craw and T. Welcome (1999). High Performance Computing Facilities for the Next Millennium. Supercomputing 1999, Portland, Oregon. http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99_1Kramer.ppt | http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99Verdier2.ppt | http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99KFitzgerald3.ppt | http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99JCraw4.ppt | http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99TWelcome5.ppt | http://www-library.lbl.gov/docs/LBNL/447/00/SRC/SC99_Kramer6.ppt

LBNL-44694. Stojkovic, B. P., Z. G. Yu, A. L. Chernyshev, A. R. Bishop, A. H. C. Neto and N. Gronbech-Jensen (1999). Charge ordering and long-range interactions in layered transition metal oxides: a quasiclassical continuum study. Physical Review B. Condensed Matter and Materials Physics.

LBNL-44693. Elmroth, E., C. Ding and Y.-S. Wu (1999). High performance computations for large scale simulations of subsurface multiphase fluid and heat flow. Journal of Supercomputing 18(3).

LBNL-44603. Borrill, J. (1999). MADCAP -- the microwave anisotropy dataset computational analysis package. 5th European SGI/Cray MPP Workshop, Bologna, ITALY.

LBNL-44602. Mauskopf, P. D., P. A. R. Ade, J. J. Bock, J. Borrill, A. Boscaleri, B. P. Crill, P. de Bernardis, G. DeGasperis, G. De Troia, P. Farese, P. G. Ferreira, K. Ganga, M. Giacometti, S. Hanany, V. V. Hristov, A. Iacoangeli, A. H. Jaffe, A. E. Lange, A. T. Lee, S. Masi, A. Melchiorri, F. Melchiorri, L. Miglio, T. Montroy, C. B. Netterfield, E. Pascale, F. Piacentini, P. L. Richards, G. Romeo, J. E. Ruhl, E. Scannapieco, F. Scaramuzzi, R. Stompor and N. Vittorio (1999). Measurement of a peak in the cosmic microwave background power spectrum from the North American test flight of Boomerang. Astrophysical Journal 536(2 PT2).

LBNL-44601. Melchiorri, A., P. A. R. Ade, P. De Bernardis, J. J. Bock, J. Borrill, A. Boscaleri, B. P. Crill, G. De Troia, P. Farese, P. G. Ferreira, K. Ganga, G. de Gasperis, M. Giacometti, V. V. Hristov, A. H. Jaffe, A. E. Lange, S. Masi, P. D. Mauskopf, L. Miglio, C. B. Netterfield, E. Pascale, F. Piacentini, G. Romeo, J. E. Ruhl and N. Vittorio (1999). A measurement of Omega from the North American test flight of Boomerang. Astrophysical Journal 536(2 PT2).

LBNL-44474. Ujfalussy, B., X. Wang, X. Zhang, D. M. C. Nicholson, W. A. Shelton, G. M. Stocks, A. Canning, Y. Wang and B. L. Gyorffy (1999). High performance first principles method for complex magnetic properties: breaking the Tflop barrier. Cray Users Group (CUG) Meeting, 1999, Minneapolis, MN.

LBNL-44460. Simon, H. D., M. Zorn, T. Head-Gordon, A. Arkin and B. Shoichet (1999). Computational biology and high performance computing. Supercomputing 1999, Portland, Oregon. http://www-library.lbl.gov/docs/LBNL/444/60/SRC/LBNL-44460.ppt

LBNL-44458. Canning, A., L. W. Wang, A. Williamson and A. Zunger (1999). Parallel empirical pseudopotential electronic structure calculations for million atom systems. Journal of Computational Physics 160(1).

LBNL-44360. Oliker, L., R. Biswas and H. N. Gabow (1999). Parallel tetrahedral mesh adaptation with dynamic load leveling. Journal of Parallel Computing 26(12).

LBNL-44337. Simon, H. D., W. T. C. Kramer and R. F. Lucas (1999). Building the Teraflops/Petabytes Production Supercomputing Center. Euro-Par '99. Parallel Processing. 5th International Euro-Par Conference, Toulouse, France. http://www-library.lbl.gov/docs/LBNL/443/37/PDF/LBNL-44337.pdf

LBNL-44289. Demmel, J. W., J. R. Gilbert and X. S. Li (1999). SuperLU Users' guide.

LBNL-44278. Reichhardt, C., R. T. Scaletter, Zimanyi and N. Gronbech-Jensen (1999). Shapiro steps in driven vortex lattices interacting with periodic pinning arrays. First Euroconference on Vortex Matter in Superconductors, Crete, Greece.

LBNL-44277. Rasmussen, K. O., T. Cretegny, P. G. Kevrekidis and N. Gronbech-Jensen (1999). Statistical mechanics of a discrete nonlinear system. Physical Review Letters 84(17).

LBNL-44217. Zhang, Z., H. Zha and H. Simon (1999). Low-rank approximations with sparse factors II: penalized methods with discrete Newton-like iterations. SIAM Journal of Matrix Analysis.

LBNL-44170. Ng, E. G. and P. Raghavan (1999). Towards a scalable hybrid sparse solver. Concurrency: Practice and Experience 12(2-3).

LBNL-44003. Zhang, Z., H. Zha and H. Simon (1999). Low-rank approximations with sparse factors I: basic algorithms and error analysis. SIAM Journal of Matrix Analysis 23(3).

LBNL-43726. Parlett, B. N. and O. A. Marques (1999). An implementation of the dqds algorithm (positive case). Linear Algebra and its Applications 309(1-3).

LBNL-43597. Zhang, Z. and H. Zha (1999). Structure and perturbation analysis of truncated SVDs for column-partitioned matrices. Siam Journal of Matrix Analysis 22(4).

LBNL-43446. Bethel, W. and S. J. Bastacky (1999). Measurement of perceived objects. IEEE Visualization '99, San Francisco, CA.

LBNL-43402. Shoshani, A., L. M. Bernardo, A. Shoshani, L. M. Bernardo, H. Nordberg, D. Rotem and A. Sim (1999). Multidimensional Indexing and Query Coordination for Tertiary Storage Management. 11th International Conference on Scientific and Statistical Database Management (SSDBM '99), Cleveland, OH.

LBNL-43374. Almgren, A. S., J. B. Bell and W. Y. Crutchfield (1999). Approximate projection methods: Part I. Inviscid analysis. SIAM Journal on Scientific Computing 22(4).

LBNL-43251. Kast, A. P. (1999). Optimal prediction of stiff oscillatory systems. http://www-library.lbl.gov/docs/LBNL/432/51/PDF/LBNL-43251.pdf | http://www-library.lbl.gov/docs/LBNL/432/51/PS/LBNL-43251.ps

LBNL-43251. Kast, A. P. (1999). Optimal prediction of stiff oscillatory mechanics. Proceedings of the National Academy of Sciences 97(12).

LBNL-43190. Oliker, L. and R. Biswas (1999). Parallelization of a dynamic unstructured application using three leading paradigms. SC'99, Portland, OR.

LBNL-43178. Wu, K. and H. Simon (1999). An Evaluation of the Parallel Shift-and-Invert Lanczos Method. The 1999 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV. http://www-library.lbl.gov/docs/LBNL/431/78/PDF/LBNL-43178.pdf | http://www-library.lbl.gov/docs/LBNL/431/78/PS/LBNL-43178.ps

LBNL-43150. Stanley, S. A. and S. Sarkar (1999). Influence of Nozzle Conditions and Discrete Forcing on the Developing Region of Turbulent Planar Jets. AIAA Journal 38(9).

LBNL-42982. Wu, K. and H. D. Simon (1999). Dynamic Restarting Schemes for Eigenvalue Problems.

LBNL-42953. Wu, K. and H. Simon (1999). TRLAN User Guide. http://www-library.lbl.gov/docs/LBNL/429/53/PDF/LBNL-42953.pdf | http://www-library.lbl.gov/docs/LBNL/429/53/PS/LBNL-42953.ps

LBNL-42917. Wu, K., H. D. Simon and L.-W. Wang (1999). Thick-Restart Lanczos Method for Electronic Structure Calculations. http://www-library.lbl.gov/docs/LBNL/429/17/PDF/LBNL-42917.pdf | http://www-library.lbl.gov/docs/LBNL/429/17/PS/LBNL-42917.ps

1998

LBNL-48574. Henderson, L. F., K. Takayama, W. Y. Crutchfield and S. Itabashi (1998). The persistence of regular reflection during strong shock diffraction over rigid ramps. Journal of Fluid Mechanics 431(25 March 2001).

LBNL-44797. Stocks, G. M., B. Ujfalussy, X. Wang, D. M. C. Nicholson, Y. Wang, A. Canning and B. L. Gyorfy (1998). Towards a constrained local moment model for first principles spin dynamics. Philosophical Magazine B 78(Nos. 5/6).

LBNL-44604. Borrill, J. (1998). The challenge of data analysis for future CMB observations. Rome 3K Cosmology Euroconference, Rome, Italy.

LBNL-44472. Galli, G., A. Canning and J. Kim (1998). Assembling small fullerenes: a molecular dynamics study. Covalently Bonded Disordered Thin-film Materials. J. E. J. M.P. Siegal, W. Milne and D. McKenzie, MRS.

LBNL-44018. Li, X. S. and J. W. Demmer (1998). Making sparse gaussian elimination scalable by static pivoting. SC '98, Orlando, FL.

LBNL-42828. Wu, K. and H. D. Simon (1998). Parallel Efficiency of the Lanczos Method for Eigenvalue Problems. 9th SIAM Conference on Parallel Processing for Scientific Computing, San Antonio, TX. http://www-library.lbl.gov/docs/LBNL/428/28/PDF/LBNL-42828.pdf | http://www-library.lbl.gov/docs/LBNL/428/28/PS/LBNL-42828.ps

LBNL-41735. Pfrommer, B., J. Demmel and H. Simon (1998). Unconstrained Energy Functionals for Electronic Structure Calculations.

LBNL-41412. Wu, K. and H. D. Simon (1998). Thick-Restart Lanczos Method for Symmetric Eigenvalue Problems. SIAM Journal of Matrix Analysis.

LBNL-41383. Ding, C. H. Q., P. M. Lyster, J. W. Lawson, J. Guo and A. da Silva (1998). Atmospheric Data Assimilation on Distributed-Memory Parallel Supercomputers. Lecture Notes in Computer Science. M. B. P. Sloot, R. Hertzberger. 1401.

LBNL-41348. Sohn, A. and H. D. Simon (1998). S-Harp: a parallel dynamic spectral partitioner. ACM Symposium on Parallel Algorithms and Architectures, Puerto Vallarta, Mexico. http://www-library.lbl.gov/docs/LBNL/413/48/PDF/LBNL-41348.pdf | http://www-library.lbl.gov/docs/LBNL/413/48/PS/LBNL-41348.ps

LBNL-41213. Borrill, J. (1998). Power Spectrum Estimators for Large CMB Datasets. Physical Review D 59(2).

LBNL-41212. Galli, G., J. Kim, A. Canning and R. Haerle (1998). Large Scale Quantum Simulations Using Tight-Binding Hamiltonians and Linear Scaling Methods. Tight-binding Approach to Computational Materials Science. A. G. a. L. C. P. Turchi, MRS.

1997

LBNL-41284. Wu, K. and H. D. Simon (1997). A Parallel Lanczos Method for Symmetric Generalized Eigenvalue Problems. Computing and Visualization in Science 2(1).

LBNL-41101. Simon, H. D. and H. Zha (1997). On Updating Problems in Latent Semantic Indexing.

LBNL-40794. Barnard, S. T., L. M. Bernardo and H. D. Simon (1997). An MPI implementation of the SPAI preconditioner on the T3E.

LBNL-40793 Ext. Abs. Sohn, A., R. Biswas and H. D. Simon (1997). P-Harp: a parallel dynamic spectral partitioner. Supercomputing '97, San Jose, CA.

LBNL-40767. Simon, H. and H. Zha (1997). Low rank matrix approximation using the Lanczos Bidiagonalization Process.

LBNL-40600. Simon, H. (1997). Reinventing the supercomputer center at NERSC. IEEE Computational Science & Engineering 4(3). [PDF] [HTML]

LBNL-40043. Demmel, J. W., J. R. Gilbert and X. S. Li (1997). An Asynchronous Parallel Supernodal Algorithm for Sparse Gaussian Elimination.

1996

PUB-779. McCurdy, W., H. Simon, A. X. Merola and J. Hules (1996). NERSC: Advancing the Frontiers of Computational Science and Technology.

LBNL-39358. Howell, L. H. and V. Beckner (1996). A Discrete Ordinates Algorithm for Domains with Embedded Boundaries.

LBNL-38820. Henderson, L. F., W. Y. Crutchfield and R. J. Virgona (1996). The Effects of Heat Conductivity and Viscosity of Argon on Shock WavesDiffracting over Rigid Ramps.

LBID-2181. Uberbacher, E., R. Mural, Y. Xu, X. Guan, M. Shah, A. Geist, R. Lee, B. Shelton, N. Grady, P. LoCascio, K. Kliewer, M. D. Zorn, F. Eeckman, V. Markowitz, S. Spengler, H. Simon, T. Gaasterland and R. Stevens (1996). A High Performance Computational Engine for the Analysis of Genomes.