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Volume 13(7);  July 2007
Bioinformatics
Predicting helical coaxial stacking in RNA multibranch loops
Rahul Tyagi and David H. Mathews
RNA. 2007 July; 13(7): 939–951. doi: 10.1261/rna.305307.
PMCID: PMC1894924
Evolution of the iron-responsive element
Paul Piccinelli and Tore Samuelsson
RNA. 2007 July; 13(7): 952–966. doi: 10.1261/rna.464807.
PMCID: PMC1894933
Reports
Cysteine of sequence motif VI is essential for nucleophilic catalysis by yeast tRNA m5C methyltransferase
Hélène Walbott, Clotilde Husson, Sylvie Auxilien, and Béatrice Golinelli-Pimpaneau
RNA. 2007 July; 13(7): 967–973. doi: 10.1261/rna.515707.
PMCID: PMC1894932
Translation of the synaptonemal complex component Sycp3 is enhanced in vivo by the germ cell specific regulator Dazl
Nicola Reynolds, Brian Collier, Victoria Bingham, Nicola K. Gray, and Howard J. Cooke
RNA. 2007 July; 13(7): 974–981. doi: 10.1261/rna.465507.
PMCID: PMC1894923
Articles
Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome
Traude H. Beilharz and Thomas Preiss
RNA. 2007 July; 13(7): 982–997. doi: 10.1261/rna.569407.
PMCID: PMC1894919
The decapping activator Lsm1p-7p–Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs
Ashis Chowdhury, Jaba Mukhopadhyay, and Sundaresan Tharun
RNA. 2007 July; 13(7): 998–1016. doi: 10.1261/rna.502507.
PMCID: PMC1894922
Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
Hani S. Zaher and Peter J. Unrau
RNA. 2007 July; 13(7): 1017–1026. doi: 10.1261/rna.548807.
PMCID: PMC1894930
Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways
Erwin L. van Dijk, Geurt Schilders, and Ger J.M. Pruijn
RNA. 2007 July; 13(7): 1027–1035. doi: 10.1261/rna.575107.
PMCID: PMC1894934
G-ribo motif favors the formation of pseudoknots in ribosomal RNA
Sergey V. Steinberg and Yury I. Boutorine
RNA. 2007 July; 13(7): 1036–1042. doi: 10.1261/rna.495207.
PMCID: PMC1894920
X-ray crystallographic and NMR studies of protein–protein and protein–nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2
Zhihua Du, John K. Lee, Sebastian Fenn, Richard Tjhen, Robert M. Stroud, and Thomas L. James
RNA. 2007 July; 13(7): 1043–1051. doi: 10.1261/rna.410107.
PMCID: PMC1894928
A comparison of vanadate to a 2′–5′ linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization
Andrew T. Torelli, Jolanta Krucinska, and Joseph E. Wedekind
RNA. 2007 July; 13(7): 1052–1070. doi: 10.1261/rna.510807.
PMCID: PMC1894929
The C-terminal domain of RNA Pol II helps ensure that editing precedes splicing of the GluR-B transcript
Kicki Ryman, Nova Fong, Eva Bratt, David L. Bentley, and Marie Öhman
RNA. 2007 July; 13(7): 1071–1078. doi: 10.1261/rna.404407.
PMCID: PMC1894935
The NS3 protein of Rice hoja blanca tenuivirus suppresses RNA silencing in plant and insect hosts by efficiently binding both siRNAs and miRNAs
Hans Hemmes, Lóránt Lakatos, Rob Goldbach, József Burgyán, and Marcel Prins
RNA. 2007 July; 13(7): 1079–1089. doi: 10.1261/rna.444007.
PMCID: PMC1894927
Genes misregulated in C. elegans deficient in Dicer, RDE-4, or RDE-1 are enriched for innate immunity genes
Noah C. Welker, Jeffrey W. Habig, and Brenda L. Bass
RNA. 2007 July; 13(7): 1090–1102. doi: 10.1261/rna.542107.
PMCID: PMC1894926
Specific trans-acting proteins interact with auxiliary RNA polyadenylation elements in the COX-2 3′-UTR
Tyra Hall-Pogar, Songchun Liang, Lisa K. Hague, and Carol S. Lutz
RNA. 2007 July; 13(7): 1103–1115. doi: 10.1261/rna.577707.
PMCID: PMC1894925
Identification of mRNAs that continue to associate with polysomes during hypoxia
Jeff D. Thomas and Gregg J. Johannes
RNA. 2007 July; 13(7): 1116–1131. doi: 10.1261/rna.534807.
PMCID: PMC1894931
Depletion of newly synthesized Argonaute1 impairs the RNAi response in Trypanosoma brucei
Huafang Shi, Christian Tschudi, and Elisabetta Ullu
RNA. 2007 July; 13(7): 1132–1139. doi: 10.1261/rna.474707.
PMCID: PMC1894921
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