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Volume 12(10);  October 2006
Review
Searching for IRES
Stephen D. Baird, Marcel Turcotte, Robert G. Korneluk, and Martin Holcik
RNA. 2006 October; 12(10): 1755–1785. doi: 10.1261/rna.157806.
PMCID: PMC1581980
Letters to the Editor
A conserved sequence motif in 3′ untranslated regions of ribosomal protein mRNAs in nematodes
Ashwin Hajarnavis and Richard Durbin
RNA. 2006 October; 12(10): 1786–1789. doi: 10.1261/rna.51306.
PMCID: PMC1581986
Liposome-mediated RNA transfection should be used with caution
Carine Barreau, Stéphanie Dutertre, Luc Paillard, and H. Beverley Osborne
RNA. 2006 October; 12(10): 1790–1793. doi: 10.1261/rna.191706.
PMCID: PMC1581979
Bioinformatics
The disparate nature of “intergenic” polyadenylation sites
Fabrice Lopez, Samuel Granjeaud, Takeshi Ara, Badih Ghattas, and Daniel Gautheret
RNA. 2006 October; 12(10): 1794–1801. doi: 10.1261/rna.136206.
PMCID: PMC1581981
RNA editing level in the mouse is determined by the genomic repeat repertoire
Yossef Neeman, Erez Y. Levanon, Michael F. Jantsch, and Eli Eisenberg
RNA. 2006 October; 12(10): 1802–1809. doi: 10.1261/rna.165106.
PMCID: PMC1581974
Report
Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome
John R. Anderson, Devi Mukherjee, Karthika Muthukumaraswamy, Karen C.M. Moraes, Carol J. Wilusz, and Jeffrey Wilusz
RNA. 2006 October; 12(10): 1810–1816. doi: 10.1261/rna.144606.
PMCID: PMC1581985
Articles
Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1
Jan Kadlec, Delphine Guilligay, Raimond B. Ravelli, and Stephen Cusack
RNA. 2006 October; 12(10): 1817–1824. doi: 10.1261/rna.177606.
PMCID: PMC1581972
RNA aptamers to mammalian initiation factor 4G inhibit cap-dependent translation by blocking the formation of initiation factor complexes
Shin Miyakawa, Akihiro Oguro, Takashi Ohtsu, Hiroaki Imataka, Nahum Sonenberg, and Yoshikazu Nakamura
RNA. 2006 October; 12(10): 1825–1834. doi: 10.1261/rna.2169406.
PMCID: PMC1581983
Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae
Valérie Hilgers, Daniela Teixeira, and Roy Parker
RNA. 2006 October; 12(10): 1835–1845. doi: 10.1261/rna.241006.
PMCID: PMC1581975
Extraordinary rates of transition metal ion-mediated ribozyme catalysis
Manami Roychowdhury-Saha and Donald H. Burke
RNA. 2006 October; 12(10): 1846–1852. doi: 10.1261/rna.128906.
PMCID: PMC1581984
Genome-wide analysis of mRNAs bound to the histone stem–loop binding protein
W.H. Davin Townley-Tilson, Sarah A. Pendergrass, William F. Marzluff, and Michael L. Whitfield
RNA. 2006 October; 12(10): 1853–1867. doi: 10.1261/rna.76006.
PMCID: PMC1581977
Analysis of the binding of the N-terminal conserved domain of yeast Cbf5p to a box H/ACA snoRNA
Christophe Normand, Regine Capeyrou, Sophie Quevillon-Cheruel, Annie Mougin, Yves Henry, and Michele Caizergues-Ferrer
RNA. 2006 October; 12(10): 1868–1882. doi: 10.1261/rna.141206.
PMCID: PMC1581976
The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns
Heli K.J. Pessa, Annukka Ruokolainen, and Mikko J. Frilander
RNA. 2006 October; 12(10): 1883–1892. doi: 10.1261/rna.213906.
PMCID: PMC1581978
Oscillating kissing stem–loop interactions mediate 5′ scanning-dependent translation by a viral 3′-cap-independent translation element
Aurélie M. Rakotondrafara, Charlotta Polacek, Eva Harris, and W. Allen Miller
RNA. 2006 October; 12(10): 1893–1906. doi: 10.1261/rna.115606.
PMCID: PMC1581982
Method
An accurate fluorescent assay for quantifying the extent of RNA editing
Loretta M. Roberson and Joshua J.C. Rosenthal
RNA. 2006 October; 12(10): 1907–1912. doi: 10.1261/rna.166906.
PMCID: PMC1581973
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