| | This journal provides immediate access to some articles. Other Issues: previous | next | latest | archiveBioinformatics The effect of intron length on exon creation ratios during the evolution of mammalian genomes Meenakshi Roy, Namshin Kim, Yi Xing, and Christopher Lee RNA. 2008 November; 14(11): 2261–2273. doi: 10.1261/rna.1024908.PMCID: PMC2578852 Analysis and classification of RNA tertiary structures Mira Abraham, Oranit Dror, Ruth Nussinov, and Haim J. Wolfson RNA. 2008 November; 14(11): 2274–2289. doi: 10.1261/rna.853208.PMCID: PMC2578864 A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions Chad J. Creighton, Ankur K. Nagaraja, Samir M. Hanash, Martin M. Matzuk, and Preethi H. Gunaratne RNA. 2008 November; 14(11): 2290–2296. doi: 10.1261/rna.1188208.PMCID: PMC2578856 Reports Mutational analysis of vaccinia virus mRNA cap (guanine-N7) methyltransferase reveals essential contributions of the N-terminal peptide that closes over the active site Sushuang Zheng and Stewart Shuman RNA. 2008 November; 14(11): 2297–2304. doi: 10.1261/rna.1201308.PMCID: PMC2578867 Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants Jannie Assenholt, John Mouaikel, Kasper R. Andersen, Ditlev E. Brodersen, Domenico Libri, and Torben Heick Jensen RNA. 2008 November; 14(11): 2305–2313. doi: 10.1261/rna.1108008.PMCID: PMC2578857 Kinetic and thermodynamic studies of peptidyltransferase in ribosomes from the extreme thermophile Thermus thermophilus
Daniel Rodriguez-Correa and Albert E. Dahlberg RNA. 2008 November; 14(11): 2314–2318. doi: 10.1261/rna.1146008.PMCID: PMC2578854 Articles Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts Yukari Asakura, Omer Ali Bayraktar, and Alice Barkan RNA. 2008 November; 14(11): 2319–2332. doi: 10.1261/rna.1223708.PMCID: PMC2578863 Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast Yuko Hasegawa, Kenji Irie, and André P. Gerber RNA. 2008 November; 14(11): 2333–2347. doi: 10.1261/rna.1016508.PMCID: PMC2578860 MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis Li-Xu Yan, Xiu-Fang Huang, Qiong Shao, MA-Yan Huang, Ling Deng, Qiu-Liang Wu, Yi-Xin Zeng, and Jian-Yong Shao RNA. 2008 November; 14(11): 2348–2360. doi: 10.1261/rna.1034808.PMCID: PMC2578865 Crystal structure of Escherichia coli PNPase: Central channel residues are involved in processive RNA degradation Zhonghao Shi, Wei-Zen Yang, Sue Lin-Chao, Kin-Fu Chak, and Hanna S. Yuan RNA. 2008 November; 14(11): 2361–2371. doi: 10.1261/rna.1244308.PMCID: PMC2578853 Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3′-hydroxyl group of A76 of the unacylated A-site tRNA Miljan Simonović and Thomas A. Steitz RNA. 2008 November; 14(11): 2372–2378. doi: 10.1261/rna.1118908.PMCID: PMC2578858 The 3′ proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits Vera A. Stupina, Arturas Meskauskas, John C. McCormack, Yaroslava G. Yingling, Bruce A. Shapiro, Jonathan D. Dinman, and Anne E. Simon RNA. 2008 November; 14(11): 2379–2393. doi: 10.1261/rna.1227808.PMCID: PMC2578866 Characterization of the termination–reinitiation strategy employed in the expression of influenza B virus BM2 protein Michael L. Powell, Sawsan Napthine, Richard J. Jackson, Ian Brierley, and T. David K. Brown RNA. 2008 November; 14(11): 2394–2406. doi: 10.1261/rna.1231008.PMCID: PMC2578862 Overexpressed mitochondrial leucyl-tRNA synthetase suppresses the A3243G mutation in the mitochondrial tRNALeu(UUR) gene Hyejeong Park, Edgar Davidson, and Michael P. King RNA. 2008 November; 14(11): 2407–2416. doi: 10.1261/rna.1208808.PMCID: PMC2578859 Polynucleotide phosphorylase hinders mRNA degradation upon ribosomal protein S1 overexpression in Escherichia coli
Federica Briani, Serena Curti, Francesca Rossi, Thomas Carzaniga, Pierluigi Mauri, and Gianni Dehò RNA. 2008 November; 14(11): 2417–2429. doi: 10.1261/rna.1123908.PMCID: PMC2578868 Mutational analysis of the U12-dependent branch site consensus sequence Jay E. Brock, Rosemary C. Dietrich, and Richard A. Padgett RNA. 2008 November; 14(11): 2430–2439. doi: 10.1261/rna.1189008.PMCID: PMC2578861 Method A novel biochemical method to identify target genes of individual microRNAs: Identification of a new Caenorhabditis elegans let-7 target Yoshiki Andachi RNA. 2008 November; 14(11): 2440–2451. doi: 10.1261/rna.1139508.PMCID: PMC2578851 Erratum Effects of N2,N2-dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m2
2G:A pairs Pradeep S. Pallan, Christoph Kreutz, Silvia Bosio, Ronald Micura, and Martin Egli RNA. 2008 November; 14(11): 2452–2453. PMCID: PMC2578855 Corrects: Pradeep S. Pallan, et al. Effects of N2,N2-dimethylguanosine on RNA structure and stability: Crystal structure of an RNA duplex with tandem m2
2G:A pairs. RNA. 2008 November; 14(11): 2452–2453. |