| | Education Functional Classification Using Phylogenomic Inference Duncan Brown and Kimmen Sjölander PMCID: PMC1484587 Review Immunoinformatics Comes of Age Bette Korber, Montiago LaBute, and Karina Yusim PMCID: PMC1484584 Research Articles The G Protein–Coupled Receptor Subset of the Chicken Genome Malin C Lagerström, Anders R Hellström, David E Gloriam, Thomas P Larsson, Helgi B Schiöth, and Robert Fredriksson PMCID: PMC1472694 How Does Cross-Reactive Stimulation Affect the Longevity of CD8+ T Cell Memory? Vitaly V Ganusov, Sergei S Pilyugin, Rafi Ahmed, and Rustom Antia PMCID: PMC1475713 Moving Forward Moving Backward: Directional Sorting of Chemotactic Cells due to Size and Adhesion Differences Jos Käfer, Paulien Hogeweg, and Athanasius F. M Marée PMCID: PMC1475715 Prioritizing Genomic Drug Targets in Pathogens: Application to Mycobacterium tuberculosis Samiul Hasan, Sabine Daugelat, P. S. Srinivasa Rao, and Mark Schreiber PMCID: PMC1475714 Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses Sergei L Kosakovsky Pond, Simon D. W Frost, Zehava Grossman, Michael B Gravenor, Douglas D Richman, and Andrew J. Leigh Brown PMCID: PMC1480537 Ultra-Fast Evaluation of Protein Energies Directly from Sequence Gevorg Grigoryan, Fei Zhou, Steve R Lustig, Gerbrand Ceder, Dane Morgan, and Amy E Keating PMCID: PMC1479088 On Modeling HIV and T Cells In Vivo: Assessing Causal Estimators in Vaccine Trials W. David Wick, Peter B Gilbert, and Steven G Self PMCID: PMC1479086 A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S Wilson, John Sidney, Ole Lund, Soren Buus, and Alessandro Sette PMCID: PMC1475712 Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis Vinay Varadan and Dimitris Anastassiou PMCID: PMC1479089 Assessing the Accuracy of Ancestral Protein Reconstruction Methods Paul D Williams, David D Pollock, Benjamin P Blackburne, and Richard A Goldstein PMCID: PMC1480538 Integrated Assessment and Prediction of Transcription Factor Binding Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, and Trey Ideker PMCID: PMC1479087 Parametric Alignment of Drosophila Genomes Colin N Dewey, Peter M Huggins, Kevin Woods, Bernd Sturmfels, and Lior Pachter PMCID: PMC1480539 Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes Mikita Suyama, Eoghan Harrington, Peer Bork, and David Torrents PMCID: PMC1484586 Noise-Induced Min Phenotypes in E. coli David Fange and Johan Elf PMCID: PMC1484588 Correction Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana Igor V Tetko, Georg Haberer, Stephen Rudd, Blake C Meyers, Hans-Werner Mewes, and Klaus F. X Mayer PMCID: PMC1484580 Corrects: Igor V Tetko, et al. Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana. PLoS Comput Biol. 2006 March; 2(3): e21. |
