| | Articles DNA supercoiling enables the Type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences Isabel J. Kingston, Niall A. Gormley, and Stephen E. Halford PMCID: PMC203326 Rad52 and Ku bind to different DNA structures produced early in double-strand break repair Dejan Ristic, Mauro Modesti, Roland Kanaar, and Claire Wyman PMCID: PMC203314 Differential regulation of the glucose-6-phosphatase TATA box by intestine-specific homeodomain proteins CDX1 and CDX2 Amandine Gautier-Stein, Claire Domon-Dell, Alexandre Calon, Isabelle Bady, Jean-Noël Freund, Gilles Mithieux, and Fabienne Rajas PMCID: PMC203330 The structural integrity exerted by N-terminal pyroglutamate is crucial for the cytotoxicity of frog ribonuclease from Rana pipiens You-Di Liao, Sui-Chi Wang, Ying-Jen Leu, Chiu-Feng Wang, Shu-Ting Chang, Yu-Ting Hong, Yun-Ru Pan, and Chinpan Chen PMCID: PMC203329 Light-mediated regulation defines a minimal promoter region of TOP2 G. H. C. M. Hettiarachchi, Vandana Yadav, M. K. Reddy, Sudip Chattopadhyay, and Sudhir K. Sopory PMCID: PMC203327 Ligand-independent activation of estrogen receptor α by XBP-1 Lihua Ding, Jinghua Yan, Jianhua Zhu, Hongjun Zhong, Qiujun Lu, Zonghua Wang, Cuifen Huang, and Qinong Ye PMCID: PMC203316 On the mechanism of strand assimilation by the herpes simplex virus type-1 single-strand DNA-binding protein (ICP8) Amitabh V. Nimonkar and Paul E. Boehmer PMCID: PMC203323 Cationic phosphoramidate α-oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation Thibaut Michel, Camille Martinand-Mari, Françoise Debart, Bernard Lebleu, Ian Robbins, and Jean-Jacques Vasseur PMCID: PMC203318 Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development Anita Berg, Trine J. Meza, Mirela Mahić, Tage Thorstensen, Kjetil Kristiansen, and Reidunn B. Aalen PMCID: PMC203319 Functional dissection of the C-terminal domain of type II DNA topoisomerase from the kinetoplastid hemoflagellate Leishmania donovani Tanushri Sengupta, Mandira Mukherjee, Chhabinath Mandal, Aditi Das, and Hemanta K. Majumder PMCID: PMC203312 Retrovirus silencer blocking by the cHS4 insulator is CTCF independent Shuyuan Yao, Cameron S. Osborne, Rikki R. Bharadwaj, Peter Pasceri, Tanya Sukonnik, Dylan Pannell, Félix Recillas-Targa, Adam G. West, and James Ellis PMCID: PMC203325 Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus Chika Sugiura, Yuki Kobayashi, Setsuyuki Aoki, Chieko Sugita, and Mamoru Sugita PMCID: PMC203311 Poly(ADP-ribosyl)ation accelerates DNA repair in a pathway dependent on Cockayne syndrome B protein Claudia Flohr, Alexander Bürkle, J. Pablo Radicella, and Bernd Epe PMCID: PMC203308 Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes Zhaolei Zhang and Mark Gerstein PMCID: PMC203328 Revisiting the mouse mitochondrial DNA sequence María Pilar Bayona-Bafaluy, Rebeca Acín-Pérez, James C. Mullikin, Jeong Soon Park, Raquel Moreno-Loshuertos, Peiqing Hu, Acisclo Pérez-Martos, Patricio Fernández-Silva, Yidong Bai, and José Antonio Enríquez PMCID: PMC203322 Identification of Daxx interacting with p73, one of the p53 family, and its regulation of p53 activity by competitive interaction with PML Eun-Joo Kim, Jong-Sup Park, and Soo-Jong Um PMCID: PMC203324 Stability of the Sp3–DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites Bo Yu, Pran K. Datta, and Srilata Bagchi PMCID: PMC203306 Biochemical evidence for Ku-independent backup pathways of NHEJ Huichen Wang, Ange Ronel Perrault, Yoshihiko Takeda, Wei Qin, Hongyan Wang, and George Iliakis PMCID: PMC203313 The Drosophila melanogaster BTB proteins bric à brac bind DNA through a composite DNA binding domain containing a pipsqueak and an AT-Hook motif Corinne Lours, Olivier Bardot, Dorothea Godt, Frank A. Laski, and Jean-Louis Couderc PMCID: PMC203310 Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair Jung-Hoon Yoon, Shigenori Iwai, Timothy R. O’Connor, and Gerd P. Pfeifer PMCID: PMC203315 A tissue-specific knockout reveals that Gata1 is not essential for Sertoli cell function in the mouse Fokke Lindeboom, Nynke Gillemans, Alar Karis, Martine Jaegle, Dies Meijer, Frank Grosveld, and Sjaak Philipsen PMCID: PMC203309 Identification and characterization of a novel cross-link lesion in d(CpC) upon 365-nm irradiation in the presence of 2-methyl-1,4-naphthoquinone Zhenjiu Liu, Yuan Gao, and Yinsheng Wang PMCID: PMC203320 DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection G. Krishnamoorthy, Bernard Roques, Jean-Luc Darlix, and Yves Mély PMCID: PMC203321 Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3′UTRs Svetlana A. Shabalina, Aleksey Y. Ogurtsov, David J. Lipman, and Alexey S. Kondrashov PMCID: PMC203331 Crystal structure of MboIIA methyltransferase Jerzy Osipiuk, Martin A. Walsh, and Andrzej Joachimiak PMCID: PMC203307 Crystal structure of a wild-type Cre recombinase–loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Eric Ennifar, Joachim E. W. Meyer, Frank Buchholz, A. Francis Stewart, and Dietrich Suck PMCID: PMC203317 NAR Methods Online Rapid generation of gene disruption constructs by in vitro transposition and identification of a Dictyostelium protein kinase that regulates its rate of growth and development Tomoaki Abe, Judith Langenick, and Jeffrey G. Williams PMCID: PMC203333 Studies of temperature-dependent electronic transduction on DNA hairpin loop sensor Youdong Mao, Chunxiong Luo, and Qi Ouyang PMCID: PMC203334 Optimizing spotting solutions for increased reproducibility of cDNA microarrays David S. Rickman, Christopher J. Herbert, and Lawrence P. Aggerbeck PMCID: PMC203335 An improved method for the in vitro evolution of aptamers and applications in protein detection and purification Michael B. Murphy, Shirin T. Fuller, Paul M. Richardson, and Sharon A. Doyle PMCID: PMC203336 A real-time DNase assay (ReDA) based on PicoGreen® fluorescence Gökhan Tolun and Richard S. Myers PMCID: PMC203337 Conversion of sub-megasized DNA to desired structures using a novel Bacillus subtilis genome vector Shinya Kaneko, Kenji Tsuge, Takashi Takeuchi, and Mitsuhiro Itaya PMCID: PMC203338 Identification of a novel proliferation-inducing determinant using lentiviral expression cloning Dmitri Chilov, Cornelia Fux, Hana Joch, and Martin Fussenegger PMCID: PMC203339 Ligation mediated PCR performed at low denaturation temperatures—PCR melting profiles Aleksander Masny and Andrzej Płucienniczak PMCID: PMC203340 Corrigendum Nucleic Acids Res. 2003 September 15; 31(18): 5461. doi: 10.1093/nar/gkg772.PMCID: PMC203332 Corrects: Shamol Saha, et al. RNA sequences that work as transcriptional activating regions. Nucleic Acids Res. 2003 March 1; 31(5): 1565–1570. |
