| | Articles The enzymatic basis of processivity in λ exonuclease Krithika Subramanian, Wiriya Rutvisuttinunt, Walter Scott, and Richard S. Myers PMCID: PMC152868 DmTTF, a novel mitochondrial transcription termination factor that recognises two sequences of Drosophila melanogaster mitochondrial DNA Marina Roberti, Paola Loguercio Polosa, Francesco Bruni, Clara Musicco, Maria Nicola Gadaleta, and Palmiro Cantatore PMCID: PMC152874 Platinum cross-linking of adenines and guanines on the quadruplex structures of the AG3(T2AG3)3 and (T2AG3)4 human telomere sequences in Na+ and K+ solutions Sophie Redon, Sophie Bombard, Miguel-Angel Elizondo-Riojas, and Jean-Claude Chottard PMCID: PMC152862 Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences C. E. Bullerwell, L. Forget, and B. F. Lang PMCID: PMC152866 Activation of influenza virus RNA polymerase by the 5′ and 3′ terminal duplex of genomic RNA M.-T. Michael Lee, Klaus Klumpp, Paul Digard, and Laurence Tiley PMCID: PMC152857 Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix Karen A. Bunting, S. Mark Roe, Anthony Headley, Tom Brown, Renos Savva, and Laurence H. Pearl PMCID: PMC152875 Human mitochondrial DNA is packaged with TFAM Tanfis Istiaq Alam, Tomotake Kanki, Tsuyoshi Muta, Koutarou Ukaji, Yoshito Abe, Hiroshi Nakayama, Koji Takio, Naotaka Hamasaki, and Dongchon Kang PMCID: PMC152855 Yeast telomerase is specialized for C/A-rich RNA templates Klaus Förstemann, Arthur J. Zaug, Thomas R. Cech, and Joachim Lingner PMCID: PMC152863 Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker Jin Zhong, Michael Karberg, and Alan M. Lambowitz PMCID: PMC152852 Mosquito has a single multisubstrate deoxyribonucleoside kinase characterized by unique substrate specificity Wolfgang Knecht, Gitte Ebert Petersen, Michael Paolo Bastner Sandrini, Leif Søndergaard, Birgitte Munch-Petersen, and Jure Piškur PMCID: PMC152860 Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes Clifford F. Brunk, Louis C. Lee, Anne B. Tran, and Jinliang Li PMCID: PMC152872 Dihydropyrimidine amidohydrolases and dihydroorotases share the same origin and several enzymatic properties Zoran Gojkovic, Lise Rislund, Birgit Andersen, Michael P. B. Sandrini, Paul F. Cook, Klaus D. Schnackerz, and Jure Piškur PMCID: PMC152861 Histone deacetylase inhibitors stimulate mitochondrial HMG-CoA synthase gene expression via a promoter proximal Sp1 site Nuria Camarero, Alícia Nadal, María José Barrero, Diego Haro, and Pedro F. Marrero PMCID: PMC152864 A revised annotation and comparative analysis of Helicobacter pylori genomes Ivo G. Boneca, Hilde de Reuse, Jean-Charles Epinat, Maude Pupin, Agnès Labigne, and Ivan Moszer PMCID: PMC152854 The ATM-related Tel1 protein of Saccharomyces cerevisiae controls a checkpoint response following phleomycin treatment Daisuke Nakada, Toshiyasu Shimomura, Kunihiro Matsumoto, and Katsunori Sugimoto PMCID: PMC152856 RPA is an initiation factor for human chromosomal DNA replication Dávid Szüts, Lisa Kitching, Christo Christov, Aidan Budd, Sew Peak-Chew, and Torsten Krude PMCID: PMC152871 An NMR study on the interaction of Escherichia coli DinI with RecA–ssDNA complexes Masatoshi Yoshimasu, Hideki Aihara, Yutaka Ito, Sundaresan Rajesh, Satoko Ishibe, Tsutomu Mikawa, Shigeyuki Yokoyama, and Takehiko Shibata PMCID: PMC152859 Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor Yoko Tacahashi, Steffen Helmling, and Claire L. Moore PMCID: PMC152867 Toucan: deciphering the cis-regulatory logic of coregulated genes Stein Aerts, Gert Thijs, Bert Coessens, Mik Staes, Yves Moreau, and Bart De Moor PMCID: PMC152870 The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties Mario F. Fraga, Esteban Ballestar, Guillermo Montoya, Panya Taysavang, Paul A. Wade, and Manel Esteller PMCID: PMC152853 Glutamate at the phosphorylation site of response regulator CtrA provides essential activities without increasing DNA binding Rania Siam and Gregory T. Marczynski PMCID: PMC152873 ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes Feng-Biao Guo, Hong-Yu Ou, and Chun-Ting Zhang PMCID: PMC152858 Micromolar concentrations of hydrogen peroxide induce oxidative DNA lesions more efficiently than millimolar concentrations in mammalian cells Jun Nakamura, Elizabeth R. Purvis, and James A. Swenberg PMCID: PMC152865 Primer-design for multiplexed genotyping Lars Kaderali, Alina Deshpande, John P. Nolan, and P. Scott White PMCID: PMC152869 NAR Methods Online Small amplified RNA-SAGE: an alternative approach to study transcriptome from limiting amount of mRNA Catheline Vilain, Frederick Libert, David Venet, Sabine Costagliola, and Gilbert Vassart PMCID: PMC152878 Nucleic acid capture assay, a new method for direct quantitation of nucleic acids Siao Ping Tsai, Anne Wong, Elaine Mai, Pamela Chan, Grace Mausisa, Mark Vasser, Parkash Jhurani, Mogens H. Jakobsen, Wai Lee T. Wong, and Jean-Philippe Stephan PMCID: PMC152879 Novel amplification of DNA in a hairpin structure: towards a radical elimination of PCR errors from amplified DNA Manjit Kaur and G. Mike Makrigiorgos PMCID: PMC152880 Targeted gene modification in mismatch-repair-deficient embryonic stem cells by single-stranded DNA oligonucleotides Marleen Dekker, Conny Brouwers, and Hein te Riele PMCID: PMC152881 Adaptation of the Ras-recruitment system to the analysis of interactions between membrane-associated proteins Fabian Köhler and Kristian M. Müller PMCID: PMC152882 Optimum conditions for selective isolation of genes from complex genomes by transformation-associated recombination cloning Sun-Hee Leem, Vladimir N. Noskov, Jung-Eun Park, Seung Il Kim, Vladimir Larionov, and Natalay Kouprina PMCID: PMC152883 Analyzing partially randomized nucleic acid pools: straight dope on doping Rob Knight and Michael Yarus PMCID: PMC152884 Site-specific mutagenesis by triple helix-forming oligonucleotides containing a reactive nucleoside analog Fumi Nagatsugi, Shigeki Sasaki, Paul S. Miller, and Michael M. Seidman PMCID: PMC152885 Corrigendum Nucleic Acids Res. 2003 March 15; 31(6): 1803. PMCID: PMC152876 Corrects: Etienne-Pascal Journet, et al. Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis. Nucleic Acids Res. 2002 December 15; 30(24): 5579–5592. Erratum Nucleic Acids Res. 2003 March 15; 31(6): 1803. PMCID: PMC152877 Corrects: Andrew Tsourkas, et al. Hybridization of 2′-O-methyl and 2′-deoxy molecular beacons to RNA and DNA targets. Nucleic Acids Res. 2002 December 1; 30(23): 5168–5174. |
