| | Research Articles Mutational spectrometry without phenotypic selection: human mitochondrial DNA. K Khrapko, H Coller, P André, X C Li, F Foret, A Belenky, B L Karger, and W G Thilly PMCID: PMC146488 Heat-shock inactivation of the TFIIH-associated kinase and change in the phosphorylation sites on the C-terminal domain of RNA polymerase II. M F Dubois, M Vincent, M Vigneron, J Adamczewski, J M Egly, and O Bensaude PMCID: PMC146510 Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. R Himmelreich, H Plagens, H Hilbert, B Reiner, and R Herrmann PMCID: PMC146517 DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter. D Nègre, C Bonod-Bidaud, C Oudot, J F Prost, A Kolb, A Ishihama, A J Cozzone, and J C Cortay PMCID: PMC146490 Characterization of a RecA/RAD51 homologue from the hyperthermophilic archaeon Pyrococcus sp. KOD1. N Rashid, M Morikawa, K Nagahisa, S Kanaya, and T Imanaka PMCID: PMC146504 Domain structure of vaccinia DNA ligase. J Sekiguchi and S Shuman PMCID: PMC146513 Cleavage properties of an estrogen-regulated polysomal ribonuclease involved in the destabilization of albumin mRNA. E Chernokalskaya, R Dompenciel, and D R Schoenberg PMCID: PMC146505 The RAD5 gene product is involved in the avoidance of non-homologous end-joining of DNA double strand breaks in the yeast Saccharomyces cerevisiae. F Ahne, B Jha, and F Eckardt-Schupp PMCID: PMC146520 Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene. H Nilsen, M Otterlei, T Haug, K Solum, T A Nagelhus, F Skorpen, and H E Krokan PMCID: PMC146498 The activation domain of the maize transcription factor Opaque-2 resides in a single acidic region. D Schmitz, S Lohmer, F Salamini, and R D Thompson PMCID: PMC146487 Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase. T Todo, S T Kim, K Hitomi, E Otoshi, T Inui, H Morioka, H Kobayashi, E Ohtsuka, H Toh, and M Ikenaga PMCID: PMC146514 The subcellular localization and length of hammerhead ribozymes determine efficacy in human cells. R Hormes, M Homann, I Oelze, P Marschall, M Tabler, F Eckstein, and G Sczakiel PMCID: PMC146489 RNase H-independent antisense activity of oligonucleotide N3 '--> P5 ' phosphoramidates. O Heidenreich, S Gryaznov, and M Nerenberg PMCID: PMC146512 Libraries for genomic SELEX. B S Singer, T Shtatland, D Brown, and L Gold PMCID: PMC146522 RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair. C P Selby, R Drapkin, D Reinberg, and A Sancar PMCID: PMC146523 Transcriptional regulation of the Drosophila-raf proto-oncogene by the DNA replication-related element (DRE)/DRE-binding factor (DREF) system. J R Ryu, T Y Choi, E J Kwon, W H Lee, Y Nishida, Y Hayashi, A Matsukage, M Yamaguchi, and M A Yoo PMCID: PMC146497 DNA sequencing using differential extension with nucleotide subsets (DENS). M C Raja, D Zevin-Sonkin, J Shwartzburd, T A Rozovskaya, I A Sobolev, O Chertkov, V Ramanathan, L Lvovsky, and L E Ulanovsky PMCID: PMC146503 Role of proofreading and mismatch repair in maintaining the stability of nucleotide repeats in DNA. B S Strauss, D Sagher, and S Acharya PMCID: PMC146509 Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein. S E Applequist, M Selg, C Raman, and H M Jäck PMCID: PMC146496 Hairpin-dimer equilibrium of a parallel-stranded DNA hairpin: formation of a four-stranded complex. U Dornberger, J Behlke, E Birch-Hirschfeld, and H Fritzsche PMCID: PMC146518 Hydration effects on the duplex stability of phosphoramidate DNA-RNA oligomers. D Barsky, M E Colvin, G Zon, and S M Gryaznov PMCID: PMC146493 The effect of cross-links on the conformational dynamics of duplex DNA. R J Cain and G D Glick PMCID: PMC146506 Yeast two-hybrid cloning of a novel zinc finger protein that interacts with the multifunctional transcription factor YY1. J L Kalenik, D Chen, M E Bradley, S J Chen, and T C Lee PMCID: PMC146511 Quantitative analysis of electrophoresis data: novel curve fitting methodology and its application to the determination of a protein-DNA binding constant. S E Shadle, D F Allen, H Guo, W K Pogozelski, J S Bashkin, and T D Tullius PMCID: PMC146501 Splicing efficiency of human immunodeficiency virus type 1 tat RNA is determined by both a suboptimal 3' splice site and a 10 nucleotide exon splicing silencer element located within tat exon 2. Z Si, B A Amendt, and C M Stoltzfus PMCID: PMC146521 Targeted integration of DNA using mutant lox sites in embryonic stem cells. K Araki, M Araki, and K Yamamura PMCID: PMC146486 Atomic force microscopic demonstration of DNA looping by GalR and HU. Y L Lyubchenko, L S Shlyakhtenko, T Aki, and S Adhya PMCID: PMC146491 Phosphorylation of ATF-1 enhances its DNA binding and transcription of the Na,K-ATPase alpha 1 subunit gene promoter. M Kobayashi, A Shimomura, M Hagiwara, and K Kawakami PMCID: PMC146500 Radioprobing of DNA: distribution of DNA breaks produced by decay of 125I incorporated into a triplex-forming oligonucleotide correlates with geometry of the triplex. I G Panyutin and R D Neumann PMCID: PMC146516 Functional analysis of the polypyrimidine tract in pre-mRNA splicing. C J Coolidge, R J Seely, and J G Patton PMCID: PMC146492 Rearrangement of interstrand cross-links into intrastrand cross-links in cis-diamminedichloroplatinum(II)-modified DNA. C Pérez, M Leng, and J M Malinge PMCID: PMC146515 Molecular cloning and analysis of Schizosaccharomyces pombe Reb1p: sequence-specific recognition of two sites in the far upstream rDNA intergenic spacer. A Zhao, A Guo, Z Liu, and L Pape PMCID: PMC146519 Covalent attachment of DNA oligonucleotides to glass. G Cohen, J Deutsch, J Fineberg, and A Levine PMCID: PMC146495 Screening differentially expressed cDNA clones obtained by differential display using amplified RNA. G M Poirier, J Pyati, J S Wan, and M G Erlander PMCID: PMC146499 Simultaneous display of different peptides on the surface of filamentous bacteriophage. P Malik and R N Perham PMCID: PMC146502 Gene targeting in C57BL/6 ES cells. Successful germ line transmission using recipient BALB/c blastocysts developmentally matured in vitro. F A Lemckert, J D Sedgwick, and H Körner PMCID: PMC146508 Molecular basis of artifacts in the detection of telomerase activity and a modified primer for a more robust 'TRAP' assay. G Krupp, K Kühne, S Tamm, W Klapper, K Heidorn, A Rott, and R Parwaresch PMCID: PMC146494 Ligation mediated fluorescent labeling of DNA sequencing primers. G Y Jang and D L Steffens PMCID: PMC146507 |
