| | Articles SURVEY AND SUMMARY: Novel domains and orthologues of eukaryotic transcription elongation factors Chris P. Ponting PMCID: PMC137420 Displacement of DNA-PKcs from DNA ends by the Werner syndrome protein Baomin Li and Lucio Comai PMCID: PMC137412 Predicted structure and phyletic distribution of the RNA-binding protein Hfq Xueguang Sun, Igor Zhulin, and Roger M. Wartell PMCID: PMC137430 Distinct domains in the CArG-box binding factor A destabilize tetraplex forms of the fragile X expanded sequence d(CGG)n Pnina Weisman-Shomer, Esther Cohen, and Michael Fry PMCID: PMC137428 Drosophila melanogaster RECQ5/QE DNA helicase: stimulation by GTP binding Katsumi Kawasaki, Sayako Maruyama, Minoru Nakayama, Kohji Matsumoto, and Takehiko Shibata PMCID: PMC137411 The switch region on Leishmania major chromosome 1 is not required for mitotic stability or gene expression, but appears to be essential Pascal Dubessay, Christophe Ravel, Patrick Bastien, Lucien Crobu, Jean-Pierre Dedet, Michel Pagès, and Christine Blaineau PMCID: PMC137432 DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis James P. Madigan, Heather L. Chotkowski, and Robert L. Glaser PMCID: PMC137418 Partial reconstitution of human RNase P in HeLa cells between its RNA subunit with an affinity tag and the intact protein components Yong Li and Sidney Altman PMCID: PMC137421 Antiproliferative effect in chronic myeloid leukaemia cells by antisense peptide nucleic acids Valentina Rapozzi, Brigitte E. A. Burm, Susanna Cogoi, Gijs A. van der Marel, Jacques H. van Boom, Franco Quadrifoglio, and Luigi E. Xodo PMCID: PMC137404 Polyamine structural effects on the induction and stabilization of liquid crystalline DNA: potential applications to DNA packaging, gene therapy and polyamine therapeutics M. Saminathan, Thresia Thomas, Akira Shirahata, C. K. S. Pillai, and T. J. Thomas PMCID: PMC137425 Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays Brian Tjaden, Rini Mukherjee Saxena, Sergey Stolyar, David R. Haynor, Eugene Kolker, and Carsten Rosenow PMCID: PMC137427 Synthesis and polymerase incorporation of 5′-amino-2′,5′-dideoxy-5′-N-triphosphate nucleotides Jia Liu Wolfe, Tomohiko Kawate, Alexei Belenky, and Vincent Stanton, Jr PMCID: PMC137424 Sequence-specific protection of plasmid DNA from restriction endonuclease hydrolysis by pyrrole–imidazole–cyclopropapyrroloindole conjugates Kazuhisa Fujimoto, Hirokazu Iida, Masako Kawakami, Toshikazu Bando, Zhi-Fu Tao, and Hiroshi Sugiyama PMCID: PMC137410 Genome-wide detection of tissue-specific alternative splicing in the human transcriptome Qiang Xu, Barmak Modrek, and Christopher Lee PMCID: PMC137414 Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA Liviu Movileanu, James M. Benevides, and George J. Thomas, Jr PMCID: PMC137406 Structural insights by molecular dynamics simulations into differential repair efficiency for ethano-A versus etheno-A adducts by the human alkylpurine-DNA N-glycosylase Anton B. Guliaev, Bo Hang, and B. Singer PMCID: PMC137416 Gene expression profiling of the aging mouse cardiac myocytes Natalya Bodyak, Peter M. Kang, Makoto Hiromura, Indra Sulijoadikusumo, Nobuo Horikoshi, Konstantin Khrapko, and Anny Usheva PMCID: PMC137419 Drosophila damage-specific DNA-binding protein 1 (D-DDB1) is controlled by the DRE/DREF system Kei-ichi Takata, Gen Ishikawa, Fumiko Hirose, and Kengo Sakaguchi PMCID: PMC137413 Definition and prediction of the full range of transcription factor binding sites—the hepatocyte nuclear factor 1 dimeric site Joseph Locker, David Ghosh, Phuong-Van Luc, and Jianhua Zheng PMCID: PMC137408 Characterisation of site-biased DNA methyltransferases: specificity, affinity and subsite relationships Andrew R. McNamara, Paul J. Hurd, Alexander E. F. Smith, and Kevin G. Ford PMCID: PMC137423 Dnmt3L is a transcriptional repressor that recruits histone deacetylase Rachel Deplus, Carmen Brenner, Wendy A. Burgers, Pascale Putmans, Tony Kouzarides, Yvan de Launoit, and François Fuks PMCID: PMC137431 Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori Qing Xu, R. D. Morgan, R. J. Roberts, S. Y. Xu, L. J. van Doorn, J. P. Donahue, G. G. Miller, and Martin J. Blaser PMCID: PMC137426 Defects in interstrand cross-link uncoupling do not account for the extreme sensitivity of ERCC1 and XPF cells to cisplatin Inusha U. De Silva, Peter J. McHugh, Peter H. Clingen, and John A. Hartley PMCID: PMC137407 Challenging artificial genetic systems: thymidine analogs with 5-position sulfur functionality Heike A. Held and Steven A. Benner PMCID: PMC137422 Mutations altering the cleavage specificity of a homing endonuclease Lenny M. Seligman, Karen M. Chisholm, Brett S. Chevalier, Meggen S. Chadsey, Samuel T. Edwards, Jeremiah H. Savage, and Adeline L. Veillet PMCID: PMC137417 Promiscuous methylation of non-canonical DNA sites by HaeIII methyltransferase Helen M. Cohen, Dan S. Tawfik, and Andrew D. Griffiths PMCID: PMC137429 Prediction of consensus structural motifs in a family of coregulated RNA sequences Yuh-Jyh Hu PMCID: PMC137409 Human non-synonymous SNPs: server and survey Vasily Ramensky, Peer Bork, and Shamil Sunyaev PMCID: PMC137415 Dictionary-driven protein annotation Isidore Rigoutsos, Tien Huynh, Aris Floratos, Laxmi Parida, and Daniel Platt PMCID: PMC137405 NAR Methods Online Improved quantitative real-time RT–PCR for expression profiling of individual cells Birgit Liss PMCID: PMC137434 Cre recombinase-mediated inversion using lox66 and lox71: method to introduce conditional point mutations into the CREB-binding protein Zuwen Zhang and Beat Lutz PMCID: PMC137435 Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection Anton Simeonov and Theo T. Nikiforov PMCID: PMC137436 Multivariate curve resolution: a powerful tool for the analysis of conformational transitions in nucleic acids Joaquim Jaumot, Núria Escaja, Raimundo Gargallo, Carlos González, Enrique Pedroso, and Romà Tauler PMCID: PMC137437 Corrigendum Nucleic Acids Res. 2002 September 1; 30(17): 3917. PMCID: PMC137433 Corrects: Rongjia Zhou, et al. SOX9 interacts with a component of the human thyroid hormone receptor-associated protein complex. Nucleic Acids Res. 2002 July 15; 30(14): 3245–3252. |
