| | Articles Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana Zdravko J. Lorković and Andrea Barta PMCID: PMC100298 Action of prokaryotic enhancer over a distance does not require continued presence of promoter-bound σ54 subunit Vladimir Bondarenko, Ye Liu, Alexander Ninfa, and Vasily M. Studitsky PMCID: PMC100299 Phosphorylation of Rph1, a damage-responsive repressor of PHR1 in Saccharomyces cerevisiae, is dependent upon Rad53 kinase Eun Mi Kim, Yeun Kyu Jang, and Sang Dai Park PMCID: PMC100300 A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI Cedric R. Clapier, Karl P. Nightingale, and Peter B. Becker PMCID: PMC100309 Supercoiling, knotting and replication fork reversal in partially replicated plasmids L. Olavarrieta, M. L. Martínez-Robles, J. M. Sogo, A. Stasiak, P. Hernández, D. B. Krimer, and J. B. Schvartzman PMCID: PMC100290 Reconstitution of the mammalian DNA double-strand break end-joining reaction reveals a requirement for an Mre11/Rad50/NBS1-containing fraction Juren Huang and William S. Dynan PMCID: PMC100305 Conserved economics of transcription termination in eubacteria Shyam Unniraman, Ranjana Prakash, and Valakunja Nagaraja PMCID: PMC100295 Identification, cloning and characterization of a new DNA-binding protein from the hyperthermophilic methanogen Methanopyrus kandleri Nikolai A. Pavlov, Dmitry I. Cherny, Igor V. Nazimov, Alexei I. Slesarev, and Vinod Subramaniam PMCID: PMC100301 Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3′→5′ exonuclease containing S1 and KH RNA-binding domains Julia A. Chekanova, James A. Dutko, I. Saira Mian, and Dmitry A. Belostotsky PMCID: PMC100302 A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitment Isabell Dahlke and Michael Thomm PMCID: PMC100285 hMutSα forms an ATP-dependent complex with hMutLα and hMutLβ on DNA Guido Plotz, Jochen Raedle, Angela Brieger, Jörg Trojan, and Stefan Zeuzem PMCID: PMC100294 Crystal structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide bound to d(CGTACG)2: implications for structure–activity relationships of acridinecarboxamide topoisomerase poisons Adrienne Adams, J. Mitchell Guss, William A. Denny, and Laurence P. G. Wakelin PMCID: PMC100304 Topology and replication of a nuclear episomal plasmid in the rodent malaria Plasmodium berghei Donald H. Williamson, Chris J. Janse, Peter W. Moore, Andrew P. Waters, and Peter R. Preiser PMCID: PMC100307 Suppression of genetic defects within the RAD6 pathway by srs2 is specific for error-free post-replication repair but not for damage-induced mutagenesis Stacey Broomfield and Wei Xiao PMCID: PMC100297 Differential effects of Rad52p overexpression on gene targeting and extrachromosomal homologous recombination in a human cell line Rafael J. Yáñez and Andrew C. G. Porter PMCID: PMC100286 The high binding affinity of phosphorothioate-modified oligomers for Ff gene 5 protein is moderated by the addition of C-5 propyne or 2′-O-methyl modifications Tung-Chung Mou and Donald M. Gray PMCID: PMC100283 Imbalance of tRNAPro isoacceptors induces +1 frameshifting at near-cognate codons Michael O’Connor PMCID: PMC100296 Imino proton NMR analysis of HDV ribozymes: nested double pseudoknot structure and Mg2+ ion-binding site close to the catalytic core in solution Yoichiro Tanaka, Tamaki Hori, Mitsuhiro Tagaya, Taiichi Sakamoto, Yasuyuki Kurihara, Masato Katahira, and Seiichi Uesugi PMCID: PMC100292 Analysis of the spacing between the two palindromes of activation sequence-1 with respect to binding to different TGA factors and transcriptional activation potential Stefanie Krawczyk, Corinna Thurow, Ricarda Niggeweg, and Christiane Gatz PMCID: PMC100291 Differential requirement for the ATPase domain of the Cockayne syndrome group B gene in the processing of UV-induced DNA damage and 8-oxoguanine lesions in human cells Rebecca R. Selzer, Simon Nyaga, Jingsheng Tuo, Alfred May, Meltem Muftuoglu, Mette Christiansen, Elisabetta Citterio, Robert M. Brosh, Jr, and Vilhelm A. Bohr PMCID: PMC100288 An insight into the active site of a type I DNA topoisomerase from the kinetoplastid protozoan Leishmania donovani Aditi Das, Chhabinath Mandal, Arindam Dasgupta, Tanushri Sengupta, and Hemanta K. Majumder PMCID: PMC100284 In vitro transcription of a torsionally constrained template Thomas Bentin and Peter E. Nielsen PMCID: PMC100306 Efficient polyadenylation of Rous sarcoma virus RNA requires the negative regulator of splicing element Brent L. Fogel, Lisa M. McNally, and Mark T. McNally PMCID: PMC100303 The function of Asp70, Glu77 and Lys79 in the Escherichia coli MutH protein Te-hui Wu, Tamalette Loh, and M. G. Marinus PMCID: PMC100293 Human AP-endonuclease 1 and hnRNP-L interact with a nCaRE-like repressor element in the AP-endonuclease 1 promoter David T. Kuninger, Tadahide Izumi, John Papaconstantinou, and Sankar Mitra PMCID: PMC100287 Long-range oxidative damage in duplex DNA: the effect of bulged G in a G–C tract and tandem G/A mispairs Edna Boone and Gary B. Schuster PMCID: PMC100289 NAR Methods Online Ordered catenation of sequence-tagged sites and multiplexed SNP genotyping by sequencing Koichiro Higasa and Kenshi Hayashi PMCID: PMC100310 Padlock oligonucleotides as a tool for labeling superhelical DNA Thibaut Roulon, Dominique Coulaud, Etienne Delain, Eric Le Cam, Claude Hélène, and Christophe Escudé PMCID: PMC100311 Simultaneous detection of CpG methylation and single nucleotide polymorphism by denaturing high performance liquid chromatography Dajun Deng, Guoren Deng, Michael F. Smith, Jing Zhou, Huijun Xin, Steven M. Powell, and Youyong Lu PMCID: PMC100312 Construction and characterization of mismatch-containing circular DNA molecules competent for assessment of nick-directed human mismatch repair in vitro Erik D. Larson, David Nickens, and James T. Drummond PMCID: PMC100313 Erratum Nucleic Acids Res. 2002 February 1; 30(3): 838. PMCID: PMC100308 Corrects: ERRATUM. Nucleic Acids Res. 2002 February 1; 30(3): 838. |
