| | Survey and Summary SURVEY
AND SUMMARY: The applications of universal DNA base analogues David Loakes PMCID: PMC55727 Articles The yeast POP2 gene
encodes a nuclease involved in mRNA deadenylation Marie-Claire Daugeron, Fabienne Mauxion, and Bertrand Séraphin PMCID: PMC55743 Synthesis and properties of oligonucleotides containing
5-formyl-2′-deoxycytidine: in
vitro DNA polymerase reactions on DNA templates containing
5-formyl-2′-deoxycytidine Naoko Karino, Yoshihito Ueno, and Akira Matsuda PMCID: PMC55734 RecA-mediated strand exchange
traverses substitutional heterologies more easily than deletions or
insertions Alexander Bucka and Andrzej Stasiak PMCID: PMC55751 Non-independence of Mnt repressor–operator interaction
determined by a new quantitative multiple fluorescence relative
affinity (QuMFRA) assay Tsz-Kwong Man and Gary
D. Stormo PMCID: PMC55749 The RNA-binding specificity
of the mouse Dazl protein Julian P. Venables, Matteo Ruggiu, and Howard
J. Cooke PMCID: PMC55744 Gene expression in isolated plant
mitochondria: high fidelity of transcription, splicing and editing
of a transgene product in electroporated organelles Jean-Claude Farré and Alejandro Araya PMCID: PMC55745 The nicking endonuclease N.BstNBI is closely related to Type IIs restriction
endonucleases MlyI and PleI Lauren S. Higgins, Caroline Besnier, and Huimin Kong PMCID: PMC55753 An unusually compact external
promoter for RNA polymerase III transcription of the human H1RNA
gene Evelyne Myslinski, Jean-Christophe Amé, Alain Krol, and Philippe Carbon PMCID: PMC55750 The participation of 5S rRNA
in the co-translational formation of a eukaryotic 5S ribonucleoprotein
complex Elong Lin, Sue-Wen Lin, and Alan Lin PMCID: PMC55736 Mi2, an auto-antigen for dermatomyositis,
is an ATP-dependent nucleosome remodeling factor Heng-Bin Wang and Yi Zhang PMCID: PMC55739 The effect of amino groups on
the stability of DNA duplexes and triplexes based on purines derived
from inosine Elena Cubero, Ramon Güimil-García, F. Javier Luque, Ramon Eritja, and Modesto Orozco PMCID: PMC55742 Hepatitis C virus internal ribosome
entry site RNA contains a tertiary structural element in a functional domain
of stem–loop II Alita J. Lyons, J.
Robin Lytle, Jordi Gomez, and Hugh D. Robertson PMCID: PMC55737 A novel cell-free system reveals
a mechanism of circular DNA formation from tandem repeats Sarit Cohen and Marcel Mechali PMCID: PMC55730 Issues in cDNA microarray analysis:
quality filtering, channel normalization, models of variations and assessment
of gene effects George C. Tseng, Min-Kyu Oh, Lars Rohlin, James C. Liao, and Wing Hung Wong PMCID: PMC55725 A novel fluorometric oligonucleotide
assay to measure O 6-methylguanine DNA
methyltransferase, methylpurine DNA glycosylase, 8-oxoguanine DNA glycosylase
and abasic endonuclease activities: DNA repair status in human breast
carcinoma cells overexpressing methylpurine DNA glycosylase Emiko L. Kreklau, Melissa Limp-Foster, Naili Liu, Yi Xu, Mark
R. Kelley, and Leonard C. Erickson PMCID: PMC55735 The brefeldin A resistance protein
Bfr1p is a component of polyribosome-associated mRNP complexes in
yeast Brian D. Lang, Ai-min Li, Heather D. Black-Brewster, and Judith L. Fridovich-Keil PMCID: PMC55738 A mRNA determinant of gRNA-directed
kinetoplastid editing Aaron L. Kabb, Lisa
M. Oppegard, Bruce
A. McKenzie, and Gregory
J. Connell PMCID: PMC55732 Human GC-AG alternative intron
isoforms with weak donor sites show enhanced consensus at acceptor exon
positions T. A. Thanaraj and Francis Clark PMCID: PMC55748 Mutations in the TAR hairpin
affect the equilibrium between alternative conformations of the
HIV-1 leader RNA Hendrik Huthoff and Ben Berkhout PMCID: PMC55741 Structure in nascent RNA leads
to termination of slippage transcription by T7 RNA polymerase Iaroslav Kuzmine, Philip
A. Gottlieb, and Craig
T. Martin PMCID: PMC55752 GeneMarkS: a self-training method
for prediction of gene starts in microbial genomes. Implications
for finding sequence motifs in regulatory regions John Besemer, Alexandre Lomsadze, and Mark Borodovsky PMCID: PMC55746 Experimental evaluation of the
Liu–Beveridge dinucleotide step model of DNA structure Philip R. Hardwidge and L.
James Maher PMCID: PMC55731 Binding specificity and stability
of duplexes formed by modified oligonucleotides with a 4096-hexanucleotide microarray Edward Timofeev and Andrei Mirzabekov PMCID: PMC55729 DNA–XPA interactions:
a 31P NMR and molecular modeling study of dCCAATAACC
association with the minimal DNA-binding domain (M98–F219)
of the nucleotide excision repair protein XPA Garry W. Buchko, Chang-Shung Tung, Kathleen McAteer, Nancy G. Isern, Leonard D. Spicer, and Michael
A. Kennedy PMCID: PMC55733 Folding of the group I intron
ribozyme from the 26S rRNA gene of Candida albicans Yi Zhang and Michael
J. Leibowitz PMCID: PMC55740 Massive parallel analysis of
the binding specificity of histone-like protein HU to single- and
double-stranded DNA with generic oligodeoxyribonucleotide microchips Alexander S. Krylov, Olga A. Zasedateleva, Dmitry V. Prokopenko, Josette Rouviere-Yaniv, and Andrei D. Mirzabekov PMCID: PMC55728 The first phytoplasma RNase P
RNA provides new insights into the sequence requirements of this ribozyme Matthias Wagner, Christiane Fingerhut, Hans
J. Gross, and Astrid Schön PMCID: PMC55747 Differential DNA recognition
and glycosylase activity of the native human MutY homolog (hMYH)
and recombinant hMYH expressed in bacteria Yesong Gu and A-Lien Lu PMCID: PMC55726 NAR Methods Online Efficient and heritable functional
knock-out of an adult phenotype in Drosophila using
a GAL4-driven hairpin RNA incorporating a heterologous spacer Alberto Piccin, Ahmad Salameh, Clara Benna, Federica Sandrelli, Gabriella Mazzotta, Mauro Zordan, Ezio Rosato, Charalambos
P. Kyriacou, and Rodolfo Costa PMCID: PMC55754 A single vector containing modified cre recombinase and LOX recombination sequences
for inducible tissue-specific amplification of gene expression Stanislaw J. Kaczmarczyk and Jeffrey
E. Green PMCID: PMC55755 A new G-tailing method for the
determination of the poly(A) tail length applied to hepatitis A
virus RNA Yuri Yu. Kusov, Gocha Shatirishvili, Georgy Dzagurov, and Verena Gauss-Müller PMCID: PMC55756 Real-time detection of gene promoter
activity: quantitation of toxin gene transcription Kandiah Jeyaseelan, Donghui Ma, and Arunmozhiarasi Armugam PMCID: PMC55757 Yeast vectors for integration
at the HO locus Warren P. Voth, James
D. Richards, Janet
M. Shaw, and David
J. Stillman PMCID: PMC55758 Identification and prevention
of a GC content bias in SAGE libraries Elliott H. Margulies, Sharon L.
R. Kardia, and Jeffrey
W. Innis PMCID: PMC55759 |
