Biomedical Ontologies and Terminologies: Understanding the Differences Between Terminologies, Classifications, Taxonomies, and Ontologies

5/24/2006


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Table of Contents

Biomedical Ontologies and Terminologies: Understanding the Differences Between Terminologies, Classifications, Taxonomies, and Ontologies

Human Language

Expressions in Systems

Pre-Computational Examples

Human Authority Files

Computer Requirements

Formalization Gap

Cooperative Computation

Understanding (Computer Processible) Vocabularies

A Meta-Terminolgy

Desirable Attributes

URU Criteria

Entry Vocabulary

Hierarchies

Relationships

Understanding the Differences

Terminology

Classification

Taxonomy

Thesaurus

Ontology

Description Logic

Difficulties for Ontologies

Duality of Central Notions

Boundary Phenomenon

Nelson's Lemma

Formal Definition Problem

Understanding MeSH

Key Notions

Reproducible

Parts of MeSH

A New Data Structure

Attributes at Each Level

Example: Exercise

What Makes a Vocabulary Useful

Summary

Author: Stuart J. Nelson, MD

Email: nelson@nlm.nih.gov

Home Page: http://www.nlm.nih.gov/mesh/