Pachepsky, Y.A., Karns, J.S., Yu, O., Shelton, D.R., Guber, A.K., Van Kessel, J.S. 2008. Strain-dependent variations in attachment of E. coli to soil particles of different sizes. International Agrophysics. 22:61-66.
Shelton, D.R., Karns, J.S., Park, C.H. 2008. A multiple protocol to improve diagnosis and isolation of shiga toxin-producing escherichia coli (stec) from human stool specimens. Diagnostic Microbiology and Infectious Disease. http://dx.DOI.org/10.1016/j.diagmicrobio.2008.05.001.
Hang, J., Sundaram, A.K., Zhu, P., Shelton, D.R., Karns, J.S., Martin, P.A., Li, S., Amstutz, P., Tang, C.M. 2008. Development of a Rapid and Sensitive Immunoassay for Detection and Subsequent Recovery of Bacillus anthracis Spores in Environmental Samples. Journal of Microbial Methods. 73:242¿246.
Shelton, D.R., Karns, J.S., Sadeghi, A.M., Coppock, C.R., Pachepsky, Y.A. 2008. Evaluation of Microbial Water Quality Indicators in a Forested/Agricultural Watershed. Proceedings of the American Society of Agricultural and Biological Engineers International (ASABE). Online:
request.asp?JID=1&AID=24306&CID=iwqe2008&v=&i=&T=1&refer=7&access=
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Sadeghi, A.M. 2008. Overland transport of manure-borne pathogen indicator organisms: observations and modeling. European Geoscienes union General Assembly 2008, Vienna, Austria, April 13-18, 2008.
Pachepsky, Y.A., Guber, A.K., Sadeghi, A.M., Shelton, D.R. 2007. Probabilistic Evaluation of the Vegetated Filter Strip Efficiency With Respect to Pathogen Removal From Runoff. Fall Meeting of the American Geophysical Union, December 10-14, 2007,
San Francisco, CA.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Yu, O. 2007. Interaction of fecal coliforms with soil aggregates. ASA-CSSA-SSSA International Annual Meetings, November 4-8, 2007, New Orleans, LA. Abstract 292-22. 2007 CDROM
Yu, O., Pachepsky, Y.A., Karns, J.S., Shelton, D.R., Guber, A.K. 2007. Strain-dependent variations in attachment of E. coli to soil particles of different sizes. ASA-CSSA-SSSA International Annual Meeting, November 4-8, 2007, New Orleans, LA. Abstract 292-24. 2007 CDROM.
Pachepsky, Y.A., Guber, A.K., Sadeghi, A.M., Shelton, D.R. 2007. Uncertainty assessment for the vegetated filter strip performance with respect to manure-borne pathogens. Joint Assembly of the European and American Geophysical Unions. Paper No. B41C-02.
Pachepsky, Y.A., Guber, A.K., Shelton, D.R., Yu, O.T. 2007. Effect of Manure on Fecal Coliform Attachment to Soil and Soil Particles of Different Sizes. Applied and Environmental Microbiology. 73(10):3363-3370.
Shelton, D.R., Park, C., Karns, J.S. 2007. A multiple protocol to improved diagnosis and isolation of shiga toxin-producing escherichia coli (stec) from human stool specimens. 107th Annual Meeting of the American Society for Microbiology, May 21-25, 2007, Toronto, Canada.
Van Kessel, J.S., Pachepsky, Y.A., Shelton, D.R., Karns, J.S. 2007. Survival of Escherichia coli in cow pats in pasture and in laboratory conditions. Journal of Applied Microbiology. 103(4):1122-1127.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Yu, O.T. 2006. Attachment of escherichia coli to soil aggregates as affected by aggregate water content and presence of manure colloids. American Geophysical Union, December 11-15, 2006, San Francisco, CA. 0800h:H11E-1292.
Devin, B.A., Pachepsky, Y.A., Shein, E.V., Polyanskaia, L.M., Shelton, D.R., Guber, A.K. 2006. Model of Aquaspirillum and Arthrobacter transport in soils. Transactions of the Institute of Ecological Soil Science. 20(3):207-218.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Van Genuchten, M.T. 2006. Preferential E. coli transport in saturated soil columns. Preferential Flow and Transport Processes in Soil Conference, November 4-9,2006, Monte Verita, Ascona, Switzerland.
Shelton, D.R., Karns, J.S., Higgins, J.A., Van Kessel, J.S., Perdue, M.L., Belt, K.T., Russel-Anelli, J., Debroy, C. 2006. Impact of microbial diversity on rapid detection of enterohemorrhagic Escherichia coli in surface waters. Federation of European Microbiological Societies Microbiology Letters. 261:95-101.
Jayasundera, S., Schmidt, W.F., Shelton, D.R., Fayer, R., Adar, F. 2006. Application of raman spectroscopy to analyse the cryptosporidium parvum oocyst wall and suture constituents [abstract]. Eastern Analytical Symposium. Somerset, New Jersey, November 13-16, 2006. Abstract #553, p. 58.
Guber, A.A., Shelton, D.R., Sadeghi, A.M., Pachepsky, Y.A., Nemes, A., Sefton, K.A. 2006. Runoff transport of manure-borne fecal coliforms and chloride: Field plot experiment and modeling. ASA-CSSA-SSSA International Meeting, November 12-16, 2006, Indianapolis, Indiana. CD-ROM.
Kouznetsov, M.Y., Roodsari, R., Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Shirmohammadi, A., Starr, J.L. 2006. Modeling manure-borne bromide and fecal coliform transport with runoff and infiltration on a hillsope. Journal of Environmental Management. 84(2007):336-346.
Pachepsky, Y.A., Devin, B.A., Polyanskaya, L.M., Shelton, D.R., Shein, E.V., Guber, A.K. 2006. The limited entrapment model to simulate the breakthrough of arthrobacter and aquaspirillum in soil columns. International Agrophysics. 20(3):207-218.
Shelton, D.R., Karns, J.S., Higgins, J.A., Van Kessel, J.S., Belt, K.T., Debroy, C. 2006. Impact of microbial diversity on detection of water-borne enterohemorrhagic Escherichia coli [abstract]. 2nd FEMS Congress of European Microbiologists, July 4-8, 2006, Madrid, Spain.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R. 2006. Attachment of manure-borne Escherichia coli to soil. 18th World Congress of Soil Science, Philadelphia, PA. July 9-15, 2006. CD-ROM, Paper No. 139-28.
Shelton, D.R., Zhu, P., Hang, J., Li, S., Karns, J.S., Amstutz, P., Tang, C. 2006. Detection of pathogenic agents using the integrating waveguide biosensor [abstract]. The Ninth World Congress on Biosensors, May 10-12, 2006, Toronto, Ontario, Canada.
Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Gish, T.J., Daughtry, C.S., Guber, A.K., Coppock, C.R. 2005. Spatial and temporal variability of fecal coliform at and near a manured field [abstract]. American Society of Agronomy Annual Meeting. 2005 CDROM.
Guber, A.K., Shelton, D.R., Sadeghi, A.M., Sikora, L.J., Nemes, A., Pachepsky, Y.A. 2005. Transport of manure constituents in runoff [abstract]. American Geophysical Union Fall Meeting. 2005 CDROM.
Devin, B.A., Shein, E.V., Pachepsky, Y.A., Shelton, D.R. 2005. Predicting the microbial contamination of soils of river valleys. International Conference on Ecology of River Basins. September 28-30, 2005, Vladimir, Russia. pp.63-65.
Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Gish, T.J., Daughtry, C.S., Guber, A.K., Coppock, C.R. 2005. Spatial and temporal variability of fecal coliform at and near a manured field [abstract]. 2005 International American Agronomy Society Meeting. 2005 CDROM.
Roodsari, R., Shelton, D.R., Shirmohammadi, A., Pachepsky, Y.A., Sadeghi, A.M., Starr, J.L. 2005. Fecal coliform transport as affected by surface condition. Transactions of the ASAE. 48(3):1055-1061.
Kuczynska, E., Shelton, D.R., Pachepsky, Y.A. 2005. Effect of bovine manure on cryptosporidium parvum oocyst attachment to soil. Applied and Environmental Microbiology. 71(10):6394-6397.
Shelton, D.R., Guber, A.K., Shein, E.V., Polyanskaya, L.M., Devin, B.A., Pachepsky, Y.A. 2005. Transport and Retention of Manure-Borne E. coli in Undisturbed Soil Columns. European Geosciences Union General Assembly Proceedings, April 24-29, 2005, Vienna, Austria. p. 9.
Sundaram, A., Hang, J., Shelton, D.R., Karns, J.S., Zhu, P., Li, S., Amstutz, P., Bull, R., Tang, C. 2005. Sensitive and Rapid Biosensor and Assays for Detection of Bacillus Anthracis Spores. ASM Biodefense Research Meeting, March 20-23, 2005, Baltimore, MD. p.60.
Guber, A.K., Shelton, D.R., Pachepsky, Y.A. 2005. Transport and retention of manure-borne coliforms in soil columns. Vadose Zone Journal. Vol.4:828-837
Stout, W.L., Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Saporito, L.S., Sharpley, A.N. 2005. Runoff transport of fecal coliforms and phosphorous released from manure in grass buffer conditions. Letters in Applied Microbiology. (41):230-234.
Shu, P., Shelton, D.R., Karns, J.S., Sundaram, A., Li, S., Amstutz, P., Tang, C. 2005. Detection of water borne E. coli using the integrated waveguide biosensor. Biosensors and Bioelectronics. 21:678-683.
Pachepsky, Y.A., Shelton, D.R., Kuczynska, E., Rouhi, S.A. 2005. Transport of manure-borne cryptosporidium parvum oocysts through saturated and unsaturated soil columns. International Agrophysics. 19:1-7.
Higgins, J.A., Karns, J.S., Shelton, D.R., Belt, K.T., Anelli, J. 2005. Tir- and stx- positive E. coli in stream waters in a metropolitan area. Applied and Environmental Microbiology. 71:2511-2519.
Guber, A.K., Shelton, D.R., Pachepsky, Y.A. 2004. Transport and retention of E. coli in saturated structured soil.[Abstract] American Geophysical Union. p.27.
Weltz, L., Pachepsky, Y.A., Shelton, D.R., Guber, A.K., Nemes, A., Starr, J.L. 2004. Distribution of manure-borne fecal coliforms in soil on grass buffer strip [Abstract]. American Society of Agronomy, Northeastern Branch Annual Meeting, July 11-14, 2004, Bordentown, New Jersey. p.4 .
Shelton, D.R., Higgins, J.A., Van Kessel, J.S., Pachepsky, Y.A., Belt, K., Karns, J.S. 2004. Estimation of viable Escherichia coli 0157 in surface waters using enrichment in conjunction with immunological detection. Journal of Microbiological Methods. 58:223-231.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R. 2004. Transport and retention of E. coli in saturated well-structured soil. American Geophysical Union, May 17-21, 2004, Montreal, Canada. Paper #3112.
Pachepsky, Y.A., Bradford, S.A., Sadeghi, A.M., Guber, A.K., Shelton, D.R. 2004. Modeling fate and transport of manure-borne pathogens in the environment. In: Proceedings of the Pathogens in the Environment Workshop, February 23-25, 2004, Kansas City, Missouri. p. 34-38.
Zhu, P., Shelton, D.R., Karns, J.S., Sundaram, A., Li, S., Amstutz, P., Tang, C. 2004. A combined immunological-PCR biosensor for detection of water borne E. coli O157:H7. American Society of Microbiology Meeting, Bio-Defense Research. p. 24.
Guber, A.K., Pachepsky, Y.A., Shelton, D.R., Shein, E.V., Polyanskaya, L.M., Devin, B.A. 2004. Faciliatated manure-borne bacteria transport in soil columns. [CD-ROM]. European Geophysical Society Meeting, April 26-30, 2004, Nice, France. paper EGU04-A-0542.
Pachepsky, Y.A., Kouznetsov, M.Y., Shelton, D.R., Roodsari, R., Shirmohammadi, A., Sadeghi, A.M., Starr, J.L. 2004. Two-dimenional representation and modeling of bromide and microbial transport at a Hillslope Grass Buffer. In: Proceedings of the 1st General Assembly of the European Geophysical Union, April 25-30, 2004, Nice, France. Paper No. 05011.
Pachepsky, Y.A., Shelton, D.R. 2004. Comparison of batch and flow experimental data on retention of manure-borne Cryptosporidium Parvum Oocysts in soils. Environmental Protection Agency. (website: http://es.epa.gov/neer/publications/meetings/9-9-2003/pdf/yakov_pachepsky.pdf.)
Pachepsky, Y.A., Fayer, R., Perdue, M.L., Shelton, D.R., Van Kessel, J.S. 2004. Zoonotic pathogens from manure: Transport and Fate. [CD-ROM]. University of Delaware Cooperative Extension.
Higgins, J.A., Shelton, D.R., Karns, J.S., Russell-Anelli, J., Belt, K. 2003. Surveying the Baltimore Ecosystem study stream sites for the presence of enteric pathogens [Abstract]. Baltimore Ecosystem Study Annual Meeting. Brochure p.1.
Pachepsky, Y.A., Shelton, D.R. 2003. Transport of manure-borne cryptosporidium parvum oocysts through saturated and unsaturated soil columns. [Abstract]. U.S. Geological Survey/U.S. EPA Stars Meeting, September 10-12, 2003, Reston, VA. p. 17.
Shelton, D.R., Pachepsky, Y.A., Belt, K.T., Debroy, C., Karns, J.S. 2003. Detection and characterization of pathogenic E. coli in surface waters: Implications for preharvest produce. United States-Japan Cooperative Program in Natural Resources. p. 12.
Shelton, D.R., Van Kessel, J.S., Wachtel, M.R., Belt, K.T., Karns, J.S. 2003. Evaluation of parameters affecting detection of Escherichia Coli 0157 in enriched water samples using immunomagnetic electrochemiluminescence. Journal of Microbiological Methods. p. 717-725.
Pachepsky, Y.A., Shelton, D.R., Guber, A., Sadeghi, A.M. 2003.Modeling surface and subsurface transport of manure-borne pathogens. Soil and Water Conservation Society Proceedings, July 25-30, 2003, Spokane, WA. p.56
Kouznetsov, M.Y., Shelton, D.R., Pachepsky, Y.A., Roodsari, R., Shirmohammadi, A., Sadeghi, A.M., Starr, J.L. 2003. Two-dimensional representation and modeling of bromide and fecal coliform transport with runoff and infiltration. [Abstract]. American Society of Agronomy Meetings. November 2-6,2003, Denver, Co. p.184.
Roodsari, R., Pachepsky, Y.A., Shelton, D.R., Shirmohammadi, P., Sadeghi, A.M., Starr, J.L. 2003. Modeling manure-borne pathogen transport with runoff and infiltration. [Abstract]. ASAE Annual International Meeting. p. 174.
Higgins, J.A., Belt, K., Hohn, C.A., Shelton, D.R. 2003. Detection of Cryptosporidium parvum in polluted stream water [Abstract]. World Association for the Advancement of Veterinary Parasitology. p. 116.
Shelton, D.R., Van Kessel, J.S., Karns, J.S. 2003. Estimating Escherichia coli O157 populations in water samples using immunomagnetic ectrochemiluminescence. American Society for Microbiology Annual Meeting. p.96
Guber, A.K., Shelton, D.R., Pachepsky, Y.A. 2003. Movement of manure-borne bacteria in soils as a colloid-facilitated transport affected by soil structure. BARC Poster Day.
Higgins, J.A., Shelton, D.R., Karns, J.S., Belt, K. 2003. Molecular tools to evaluate the epidemiology and control of waterborne zoonotic infections. American Association of Veterinary Parasitologists Proceedings, July 22, 2003.Denver, Colorado. p. 61.
Pachepsky, Y.A., Shelton, D.R. 2003. Modeling surface and subsurface transport of manure-borne microorganisms. Modeling Environmental Impact of Animal Production. p.12
Higgins, J.A., Karns, J.S., Shelton, D.R., Belt, K. 2003. Prevalence and molecular characterization of enteropathogenic E. coli in streams along an urban-rural gradient in the Baltimore, Maryland Metropolitan Area [abstract]. American Society for Microbiology Annual Meeting. p. 125.
Pachepsky, Y.A., Shelton, D.R., Sadeghi, A.M., Stout, W.L. 2003. Transport of manure-borne bacteria and colloids in a stony soil. Joint Assembly of the European and American Geophysical Unions, April 6-10, 2003, Nice, France. Paper # EGU03-A-03 812.
Shelton, D.R., Pachepsky, Y.A., Sadeghi, A.M., Stout, W.L., Karns, J.S., Gbarek, W.J. 2003. Release rates of manure-borne coliform bacteria from data on leaching through stony soil. Vadose Zone Journal. 2:34-39.
Sadeghi, A.M., Pachepsky, Y.A., Shelton, D.R., Stout, W.L. 2002. Modeling coliform bacteria and bromide transport in large in-situ columns of a fractured soil. American Society of Agronomy Meetings. p.178.
KUCZYNSKA, E., BOYER, D.G., SHELTON, D.R. COMPARISON OF IMMUNOFLUORESCENT ANTIBODY ASSAY (IFA) AND IMMUNOMAGNETIC ELECTROCHEMILUMINESCENCE (IM-ECL) IN DETECTION OF CRYPTOSPORIDIUM PARVUM IN KARST WATER SAMPLES. JOURNAL OF MICROBIOLOGICAL METHODS. 2003. v. 53. p. 17-26.
Higgins, J.A., Nasarabadi, S., Karns, J.S., Shelton, D.R., Cooper, M., Gbakima, A., Koopman, R.P. 2003. A handheld real time thermal cycler for bacterial pathogen detection. Biosensors and Bioelectronics. p. 115-1123.
Roodsari, R., Shirmohammadi, A., Shelton, D.R., Pachepsky, Y.A., Sadeghi, A.M., Starr, J.L. 2002. Field-scale monitoring and simulation of the overland transport of bromide and pathogens. Abstract of Agronomy Meetings. p.178.