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Andreas D. Baxevanis, Ph.D.
Deputy Scientific Director, National Human Genome Research Institute
Director, Computational Genomics Program
Director, Bioinformatics and Scientific Programming Core
Associate Investigator, Genome Technology Branch
Acting Director, Intramural Training Office
Selected Publications
Banerjee-Basu S., Baxevanis A.D. Threading analysis of the Pitx2 homeodomain: predicted structural effects of mutations causing Rieger syndrome and iridogoniodysgenesis. Human Mutation, 14:312-319. 1999. [PubMed]
Banerjee-Basu,S., Baxevanis A.D. Molecular evolution of the homeodomain family of transcription factors. Nucleic Acids Res, 29:3258-3269. 2001. [PubMed]
Makalowska I., Ryan J.F., Baxevanis A.D., GeneMachine: Gene prediction and sequence annotation. Bioinformatics, 17:843-844, 2001. [PubMed]
Saleem R.A., Banerjee-Basu S., Berry F.B., Baxevanis A.D., Walter M.A. Analyses of the effects that disease-causing missense mutations have on the structure and function of the winged-helix protein FOXC1. Am. J. Hum Genet, 68:627-41. 2001. [PubMed]
Banerjee-Basu S., Baxevanis A.D. Molecular modeling of mutations in the DNA-binding domain of oncoprotein Qin. Molecular Cancer Therapeutics, 1:1237-1241. 2002. [PubMed]
Banerjee-Basu S., Moreland T., Hsu B.J., Trout K.L., Baxevanis A.D. The Homeodomain Resource: 2003 Update. Nucleic Acids Res, 31:304-306. 2003. [PubMed]
Saleem R.A., Banerjee-Basu S., Berry F.B., Baxevanis A.D., Walter M.A. Structural and functional analyses of disease-causing missense mutations in the forkhead domain of FOXC1. Hum Mol Genet, 12:2993-3005. 2003. [PubMed]
Banerjee-Basu S., Baxevanis A.D. Structural analysis of disease-causing mutations in the P-subfamily of forkhead transcription factors. Proteins, 54:639-647. 2004. [PubMed]
Saleem R.A., Banerjee-Basu S., Murphy T.C., Baxevanis A., Walter M.A. Essential structural and functional determinants within the forkhead domain of FOXC1. Nucleic Acids Res, 32:4182-4193. 2004. [PubMed]
Gillanders E.M., Masiello A., Gildea D., Umayam L., Duggal P., et al. GeneLink: a data management system designed to facilitate genetic studies of complex traits. BMC Genomics, 5(1):81. 2004. [PubMed]
The ENCODE Consortium. The ENCODE (Encyclopedia of DNA Elements) Project. Science, 306:636-640. 2004. [Full Text] 
Elnitski LL, Shah P, Moreland RT, Umayam L, Wolfsberg TG, Baxevanis AD. The ENCODEdb portal: simplified access to ENCODE Consortium data. Genome Res, 17:954-959. 2007. [PubMed]
Ryan JF, Mazza ME, Pang K, Matus DQ, Baxevanis AD, Martindale MQ, Finnerty JR. Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone Nematostella vectensis. PLoS ONE ,2:e153. 2007. [PubMed]
Ryan JF, Baxevanis AD. Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla. Biol Direct, 2:37. 2007. [PubMed]
McBride CM, Alford SH, Reid RJ, Larson EB, Baxevanis AD, Brody LC. Putting science over supposition in the arena of personalized genomics. Nat Genet, 40:939-942. 2008. [PubMed]
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Books and Guides
Wolfsberg T.G., Wetterstrand K.A., Guyer M.S., Collins F.S., and Baxevanis A.D. A User's Guide to the Human Genome II. Nature Genetics: Supplement 35: 1-79. 2003. [Full Text]
Baxevanis, A.D, Ouellette B.F.F. (Eds). Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd ed. John Wiley & Sons, 2005.
Last Updated: March 10, 2009
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