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Volume 84 Issue 4  April 10th, 2009
(Next issue: May 15th, 2009)

With the increasing popularity and feasibility of large-scale association studies, alleles at a variety of loci throughout the genome have been found to be significantly associated with complex disease. Although reports of such disease alleles have increased in the last few years, the first genetic associations with multifactorial diseases were observed decades ago and involved alleles within the MHC region on 6p21. A great deal of insight about disease association analysis and linkage disequilibrium (LD) structure came from studying the MHC region. In 1967, J.L. Amiel reported an increased frequency of specific HLA-B antigens in Hodgkin disease (in Histocompatibility Testing, Curtoni, E.S., ed., 79–81, Munksgaard). In the same publication, R. Cellini et al. were the first to use the term haplotype to refer to the specific arrangement of linked alleles within the region (in Histocompatibility Testing, Curtoni, E.S., ed., 147–187, Munksgaard). Shortly thereafter, in 1971, Grumet et al. suggested that care must be taken when evaluating a region with such high LD and that observed disease associations might in fact be due to causative alleles in high LD with the markers tested (New Eng. J. Med. 285, 193-195). In the decades since these reports, variants in the region have been associated with a wide range of complex diseases, particularly those involving autoimmunity and inflammation. Cover image by Robin Williamson.


Latest Articles

The American Journal of Human Genetics publishes papers online ahead of the print issue on a weekly basis. This week's postings include papers on a new tool for the analysis of mtDNA sequence data, a genome-wide association study to identify variants associated with asthma, and the involvement of mutations in KCNJ10 and SLC26A4 in the digenic inheritance of enlarged vestibular aqueduct syndrome. Click here to see all papers published early online.


Featured Article

 Shi

The p53 pathway and natural selection
The expression of p53 is regulated by a number of proteins, and one of its main inhibitors is MDM2. Researchers have predicted that alleles of the genes may be under selective pressures. Shi and colleagues report that the p53 allele has undergone selective pressure due to changes in winter temperature, but not in response to UV exposure. In contrast, the MDM2 variant showed signs of selection only due to UV exposure.

In This Issue

 Zhang

The XQTL test in family-based designs
Methods of testing for association with markers on the X-chromosome differ from those dealing with autosomal loci because the X-chromosome undergoes differential inheritance in males versus females and is subject to dosage compensation. Here, Zhang et al. develop a test that identifies X-linked QTL by using family samples.

 Alders

DPP6 in IVF
Idiopathic ventricular fibrillation (IVF) is currently diagnosed only after the occurrence of a sudden cardiac death or an aborted sudden cardiac death. The presence of a family history of IVF indicates a genetic component to this condition. Here, Alders et al. identify a conserved haplotype on 7q36 encompassing DPP6 in IVF families, providing hope for earlier diagnosis.

 Dathe

A duplication within a BMP2 regulatory element
One type of brachydactyly, BDA2, is characterized by shortening of the middle phalanges of the second and fifth finger. Here, Dathe and colleagues study two families with a variable but penetrant BDA2 phenotype. Genome-wide linkage analysis identifies a locus on 20p with the promising candidate BMP2, but initial sequencing efforts fail to identify any obvious mutations. The authors then examine the genomic region surrounding the BMP2 coding sequence and find small duplications about 110 kb downstream in both families.

 Gao

Genome-wide linkage screen of familial PD
Genome-wide linkage studies (GWLS) can be a powerful technique used to uncover regions of the genome associated with a certain trait or disorder. Here, Gao et al. conduct a GWLS to detect genomic regions that associate with Parkinson disease (PD). Their findings indicate that a region on chromosome 18 containing 76 annotated genes and another locus on chromosome 3 containing 90 genes are associated with PD.

Featured Article from Trends in Genetics

Prospects for retinal gene replacement therapy

The results of recent clinical trials that evaluate the effectiveness of gene replacement therapy for retinal degeneration have been very encouraging. The retinal dystrophies have been considered a strong candidate for such treatment because many genes have been identified in which loss-of-function mutations lead to disease. In addition, the eye has turned out to be a great organ for both the administration of therapies and the monitoring of treatment success. In this review, Smith, Bainbridge and Ali discuss data from gene replacement trials and evaluate which other genes are likely to be good targets on which to focus future efforts.

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Featured Job

Chair
Discipline of Genetics

Memorial University of Newfoundland invites applications for the position of Chair of the Discipline of Genetics. This is an academic appointment in the clinical discipline of Genetics within the Faculty of Medicine (www.med.mun.ca). The successful applicant will have demonstrated internationally-recognized leadership and research successes in the area of human genetics. Experience with multidisciplinary, patient-oriented research will be an advantage. If suitably qualified, the successful applicant will also hold a clinical joint appointment with Eastern Health, the province’s largest integrated health authority. For more information click here.