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Volume 131(3);  March 2003
Editor's Choice
Summaries of Legume Genomics Projects from around the Globe. Community Resources for Crops and Models
K. A. VandenBosch and G. Stacey
Plant Physiol. 2003 March; 131(3): 840–865.
PMCID: PMC1540284
Updates
Legumes: Importance and Constraints to Greater Use
P. H. Graham and C. P. Vance
Plant Physiol. 2003 March; 131(3): 872–877.
PMCID: PMC1540286
Legume Natural Products: Understanding and Manipulating Complex Pathways for Human and Animal Health
R. A. Dixon and L. W. Sumner
Plant Physiol. 2003 March; 131(3): 878–885.
PMCID: PMC1540287
Can We Improve the Nutritional Quality of Legume Seeds?
T. L. Wang, C. Domoney, C. L. Hedley, R. Casey, and M. A. Grusak
Plant Physiol. 2003 March; 131(3): 886–891.
PMCID: PMC1540288
Recent Advances in Legume Transformation
D. A. Somers, D. A. Samac, and P. M. Olhoft
Plant Physiol. 2003 March; 131(3): 892–899.
PMCID: PMC1540289
The Rest of the Iceberg. Legume Diversity and Evolution in a Phylogenetic Context
J. J. Doyle and M. A. Luckow
Plant Physiol. 2003 March; 131(3): 900–910.
PMCID: PMC1540290
Floral Development in Legumes
S. C. Tucker
Plant Physiol. 2003 March; 131(3): 911–926.
PMCID: PMC1540291
Axillary Meristem Development. Budding Relationships between Networks Controlling Flowering, Branching, and Photoperiod Responsiveness
C. A. Beveridge, J. L. Weller, S. R. Singer, and J. M. Hofer
Plant Physiol. 2003 March; 131(3): 927–934.
PMCID: PMC1540292
Symbiosis, Inventiveness by Recruitment?
K. Szczyglowski and L. Amyot
Plant Physiol. 2003 March; 131(3): 935–940.
PMCID: PMC1540293
The ATP-Binding Cassette Transporters: Structure, Function, and Gene Family Comparison between Rice and Arabidopsis
M. Jasinski, E. Ducos, E. Martinoia, and M. Boutry
Plant Physiol. 2003 March; 131(3): 1169–1177.
PMCID: PMC1540298
On the Inside
P. V. Minorsky
Plant Physiol. 2003 March; 131(3): 1157–1158.
PMCID: PMC1540294
Editorial
Advances in Legume Biology
K. VandenBosch and G. Stacey
Plant Physiol. 2003 March; 131(3): 839.
PMCID: PMC1540283
Scientific Correspondence
A TILLING Reverse Genetics Tool and a Web-Accessible Collection of Mutants of the Legume Lotus japonicus
J. A. Perry, T. L. Wang, T. J. Welham, S. Gardner, J. M. Pike, S. Yoshida, and M. Parniske
Plant Physiol. 2003 March; 131(3): 866–871.
PMCID: PMC1540285
Secretion of Secondary Metabolites by ATP-Binding Cassette Transporters in Plant Cell Suspension Cultures
A. Goossens, S. T. Hakkinen, I. Laakso, K. Oksman-Caldentey, and D. Inze
Plant Physiol. 2003 March; 131(3): 1161–1164.
PMCID: PMC1540296
Rapid and Efficient Suppression of Gene Expression in a Single-Cell Model System, Ceratopteris richardii
S. C. Stout, G. B. Clark, S. Archer-Evans, and S. J. Roux
Plant Physiol. 2003 March; 131(3): 1165–1168.
PMCID: PMC1540297
The Hot and the Classic
P. V. Minorsky
Plant Physiol. 2003 March; 131(3): 1159–1160.
PMCID: PMC1540295
Research Articles
Biochemical Processes and Macromolecular Structures
A Cluster of Genes Encodes the Two Types of Chalcone Isomerase Involved in the Biosynthesis of General Flavonoids and Legume-Specific 5-Deoxy(iso)flavonoids in Lotus japonicus
Norimoto Shimada, Toshio Aoki, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, and Shin-ichi Ayabe
Plant Physiol. 2003 March; 131(3): 941–951. doi: 10.1104/pp.004820.
PMCID: PMC166860
Conformation of a Group 2 Late Embryogenesis Abundant Protein from Soybean. Evidence of Poly (l-Proline)-type II Structure
Jose L. Soulages, Kangmin Kim, Estela L. Arrese, Christina Walters, and John C. Cushman
Plant Physiol. 2003 March; 131(3): 963–975. doi: 10.1104/pp.015891.
PMCID: PMC166862
Mapping the Proteome of Barrel Medic (Medicago truncatula)
Bonnie S. Watson, Victor S. Asirvatham, Liangjiang Wang, and Lloyd W. Sumner
Plant Physiol. 2003 March; 131(3): 1104–1123. doi: 10.1104/pp.102.019034.
PMCID: PMC166875
4-Coumarate:Coenzyme A Ligase Has the Catalytic Capacity to Synthesize and Reuse Various (Di)Adenosine Polyphosphates
Małgorzata Pietrowska-Borek, Hans-Peter Stuible, Erich Kombrink, and Andrzej Guranowski
Plant Physiol. 2003 March; 131(3): 1401–1410. doi: 10.1104/pp.011684.
PMCID: PMC166899
One-Carbon Metabolism in Plants. Regulation of Tetrahydrofolate Synthesis during Germination and Seedling Development
Samuel Jabrin, Stéphane Ravanel, Bernadette Gambonnet, Roland Douce, and Fabrice Rébeillé
Plant Physiol. 2003 March; 131(3): 1431–1439. doi: 10.1104/pp.016915.
PMCID: PMC166902
Chemical Form and Distribution of Selenium and Sulfur in the Selenium Hyperaccumulator Astragalus bisulcatus
Ingrid J. Pickering, Carrie Wright, Ben Bubner, Danielle Ellis, Michael W. Persans, Eileen Y. Yu, Graham N. George, Roger C. Prince, and David E. Salt
Plant Physiol. 2003 March; 131(3): 1460–1467. doi: 10.1104/pp.014787.
PMCID: PMC166905
The Role of Biotin in Regulating 3-Methylcrotonyl-Coenzyme A Carboxylase Expression in Arabidopsis
Ping Che, Lisa M. Weaver, Eve Syrkin Wurtele, and Basil J. Nikolau
Plant Physiol. 2003 March; 131(3): 1479–1486. doi: 10.1104/pp.013243.
PMCID: PMC166907
Tobacco Transgenic Lines That Express Fenugreek Galactomannan Galactosyltransferase Constitutively Have Structurally Altered Galactomannans in Their Seed Endosperm Cell Walls
J.S. Grant Reid, Mary E. Edwards, Cathryn A. Dickson, Catherine Scott, and Michael J. Gidley
Plant Physiol. 2003 March; 131(3): 1487–1495. doi: 10.1104/pp.102.016840.
PMCID: PMC166908
Carbon Export from Arbuscular Mycorrhizal Roots Involves the Translocation of Carbohydrate as well as Lipid
Berta Bago, Philip E. Pfeffer, Jehad Abubaker, Jeongwon Jun, James W. Allen, Janine Brouillette, David D. Douds, Peter J. Lammers, and Yair Shachar-Hill
Plant Physiol. 2003 March; 131(3): 1496–1507. doi: 10.1104/pp.102.007765.
PMCID: PMC166909
Cell Biology and Signal Transduction
Enhanced Gravitropism of Roots with a Disrupted Cap Actin Cytoskeleton
Guichuan Hou, Deepti R. Mohamalawari, and Elison B. Blancaflor
Plant Physiol. 2003 March; 131(3): 1360–1373. doi: 10.1104/pp.014423.
PMCID: PMC166895
A Novel Cl Inward-Rectifying Current in the Plasma Membrane of the Calcifying Marine Phytoplankton Coccolithus pelagicus
Alison R. Taylor and Colin Brownlee
Plant Physiol. 2003 March; 131(3): 1391–1400. doi: 10.1104/pp.011791.
PMCID: PMC166898
Development and Hormone Action
Expression of an Expansin Gene Is Correlated with Root Elongation in Soybean
Dong-Keun Lee, Ji Hoon Ahn, Sang-Kee Song, Yang Do Choi, and Jong Seob Lee
Plant Physiol. 2003 March; 131(3): 985–997. doi: 10.1104/pp.009902.
PMCID: PMC166864
The Medicago Species A2-Type Cyclin Is Auxin Regulated and Involved in Meristem Formation But Dispensable for Endoreduplication-Associated Developmental Programs
François Roudier, Elena Fedorova, Manuel Lebris, Phillippe Lecomte, Janos Györgyey, Daniele Vaubert, Gabor Horvath, Pierre Abad, Adam Kondorosi, and Eva Kondorosi
Plant Physiol. 2003 March; 131(3): 1091–1103. doi: 10.1104/pp.102.011122.
PMCID: PMC166874
Pollination-, Development-, and Auxin-Specific Regulation of Gibberellin 3β-Hydroxylase Gene Expression in Pea Fruit and Seeds
Jocelyn A. Ozga, Jody Yu, and Dennis M. Reinecke
Plant Physiol. 2003 March; 131(3): 1137–1146. doi: 10.1104/pp.102.015974.
PMCID: PMC166877
Expression Studies of Gibberellin Oxidases in Developing Pumpkin Seeds
Andrea Frisse, Maria João Pimenta, and Theo Lange
Plant Physiol. 2003 March; 131(3): 1220–1227. doi: 10.1104/pp.015206.
PMCID: PMC166882
The Arabidopsis Mutant alh1 Illustrates a Cross Talk between Ethylene and Auxin
Filip Vandenbussche, Jan Smalle, Jie Le, Nelson José Madeira Saibo, Annelies De Paepe, Laury Chaerle, Olaf Tietz, Raphael Smets, Lucas J.J. Laarhoven, Frans J.M. Harren, Harry Van Onckelen, Klaus Palme, Jean-Pierre Verbelen, and Dominique Van Der Straeten
Plant Physiol. 2003 March; 131(3): 1228–1238. doi: 10.1104/pp.010850.
PMCID: PMC166883
Sterols Regulate Development and Gene Expression in Arabidopsis
Jun-Xian He, Shozo Fujioka, Tsai-Chi Li, Shin Gene Kang, Hideharu Seto, Suguru Takatsuto, Shigeo Yoshida, and Jyan-Chyun Jang
Plant Physiol. 2003 March; 131(3): 1258–1269. doi: 10.1104/pp.014605.
PMCID: PMC166886
Transgenic Studies on the Involvement of Cytokinin and Gibberellin in Male Development
Shihshieh Huang, R. Eric Cerny, Youlin Qi, Deepti Bhat, Carrie M. Aydt, Doris D. Hanson, Kathleen P. Malloy, and Linda A. Ness
Plant Physiol. 2003 March; 131(3): 1270–1282. doi: 10.1104/pp.102.018598.
PMCID: PMC166887
Plasma Membrane H+-ATPase Is Involved in Auxin-Mediated Cell Elongation during Wheat Embryo Development
Nicole Rober-Kleber, Jolana T.P. Albrechtová, Sonja Fleig, Norbert Huck, Wolfgang Michalke, Edgar Wagner, Volker Speth, Gunther Neuhaus, and Christiane Fischer-Iglesias
Plant Physiol. 2003 March; 131(3): 1302–1312. doi: 10.1104/pp.013466.
PMCID: PMC166890
Auxin Signaling in Arabidopsis Leaf Vascular Development
Jim Mattsson, Wenzislava Ckurshumova, and Thomas Berleth
Plant Physiol. 2003 March; 131(3): 1327–1339. doi: 10.1104/pp.013623.
PMCID: PMC166892
Phytochromes B, D, and E Act Redundantly to Control Multiple Physiological Responses in Arabidopsis
Keara A. Franklin, Uta Praekelt, Wendy M. Stoddart, Olivia E. Billingham, Karen J. Halliday, and Garry C. Whitelam
Plant Physiol. 2003 March; 131(3): 1340–1346. doi: 10.1104/pp.102.015487.
PMCID: PMC166893
O-Glucosylation of cis-Zeatin in Maize. Characterization of Genes, Enzymes, and Endogenous Cytokinins
Yeonjin K. Veach, Ruth C. Martin, David W.S. Mok, Jiri Malbeck, Radomira Vankova, and Machteld C. Mok
Plant Physiol. 2003 March; 131(3): 1374–1380. doi: 10.1104/pp.017210.
PMCID: PMC166896
Phytochromes A and B Mediate Red-Light-Induced Positive Phototropism in Roots
John Z. Kiss, Jack L. Mullen, Melanie J. Correll, and Roger P. Hangarter
Plant Physiol. 2003 March; 131(3): 1411–1417. doi: 10.1104/pp.013847.
PMCID: PMC166900
CsAGP1, a Gibberellin-Responsive Gene from Cucumber Hypocotyls, Encodes a Classical Arabinogalactan Protein and Is Involved in Stem Elongation
Me Hea Park, Yoshihito Suzuki, Makiko Chono, J. Paul Knox, and Isomaro Yamaguchi
Plant Physiol. 2003 March; 131(3): 1450–1459. doi: 10.1104/pp.015628.
PMCID: PMC166904
Environmental Stress and Adaptation
Enhanced Selenium Tolerance and Accumulation in Transgenic Arabidopsis Expressing a Mouse Selenocysteine Lyase
Marinus Pilon, Jennifer D. Owen, Gulnara F. Garifullina, Tatsuo Kurihara, Hisaaki Mihara, Nobuyoshi Esaki, and Elizabeth A.H. Pilon-Smits
Plant Physiol. 2003 March; 131(3): 1250–1257. doi: 10.1104/pp.102.014639.
PMCID: PMC166885
Expression of a GALACTINOL SYNTHASE Gene in Tomato Seeds Is Up-Regulated before Maturation Desiccation and Again after Imbibition whenever Radicle Protrusion Is Prevented
Bruce Downie, Sunitha Gurusinghe, Petambar Dahal, Richard R. Thacker, John C. Snyder, Hiroyuki Nonogaki, Kyuock Yim, Keith Fukanaga, Veria Alvarado, and Kent J. Bradford
Plant Physiol. 2003 March; 131(3): 1347–1359. doi: 10.1104/pp.016386.
PMCID: PMC166894
Regulation of Root Elongation under Phosphorus Stress Involves Changes in Ethylene Responsiveness
Zhong Ma, Tobias I. Baskin, Kathleen M. Brown, and Jonathan P. Lynch
Plant Physiol. 2003 March; 131(3): 1381–1390. doi: 10.1104/pp.012161.
PMCID: PMC166897
Biphasic Superoxide Generation in Potato Tubers. A Self-Amplifying Response to Stress
S.M. Johnson, S.J. Doherty, and R.R.D. Croy
Plant Physiol. 2003 March; 131(3): 1440–1449. doi: 10.1104/pp.013300.
PMCID: PMC166903
Genetics, Genomics, and Molecular Evolution
Syntenic Relationships between Medicago truncatula and Arabidopsis Reveal Extensive Divergence of Genome Organization
Hongyan Zhu, Dong-Jin Kim, Jong-Min Baek, Hong-Kyu Choi, Leland C. Ellis, Helge Küester, W. Richard McCombie, Hui-Mei Peng, and Douglas R. Cook
Plant Physiol. 2003 March; 131(3): 1018–1026. doi: 10.1104/pp.102.016436.
PMCID: PMC166867
Dual Intracellular Localization and Targeting of Aminoimidazole Ribonucleotide Synthetase in Cowpea
Danica Erin Goggin, Richard Lipscombe, Elena Fedorova, A. Harvey Millar, Anthea Mann, Craig Anthony Atkins, and Penelope Mary Collina Smith
Plant Physiol. 2003 March; 131(3): 1033–1041. doi: 10.1104/pp.102.015081.
PMCID: PMC166869
A Phylogenomic Investigation of CYCLOIDEA-Like TCP Genes in the Leguminosae
Hélène L. Citerne, Da Luo, R. Toby Pennington, Enrico Coen, and Quentin C.B. Cronk
Plant Physiol. 2003 March; 131(3): 1042–1053. doi: 10.1104/pp.102.016311.
PMCID: PMC166870
Nylon Filter Arrays Reveal Differential Gene Expression in Proteoid Roots of White Lupin in Response to Phosphorus Deficiency
Claudia Uhde-Stone, Kelly E. Zinn, Mario Ramirez-Yáñez, Aiguo Li, Carroll P. Vance, and Deborah L. Allan
Plant Physiol. 2003 March; 131(3): 1064–1079. doi: 10.1104/pp.102.016881.
PMCID: PMC166872
Genetic Diversity of Eurycoma longifolia Inferred from Single Nucleotide Polymorphisms
Asiah Osman, Barbara Jordan, Philip A. Lessard, Norwati Muhammad, M. Rosli Haron, Norifiza Mat Riffin, Anthony J. Sinskey, ChoKyun Rha, and David E. Housman
Plant Physiol. 2003 March; 131(3): 1294–1301. doi: 10.1104/pp.012492.
PMCID: PMC166889
Whole-Genome Comparison of Leucine-Rich Repeat Extensins in Arabidopsis and Rice. A Conserved Family of Cell Wall Proteins Form a Vegetative and a Reproductive Clade
Nicolas Baumberger, Brigitte Doesseger, Romain Guyot, Anouck Diet, Ronald L. Parsons, Mark A. Clark, M.P. Simmons, Patricia Bedinger, Stephen A. Goff, Christoph Ringli, and Beat Keller
Plant Physiol. 2003 March; 131(3): 1313–1326. doi: 10.1104/pp.102.014928.
PMCID: PMC166891
Regulation of the Alternative Oxidase Aox1 Gene in Chlamydomonas reinhardtii. Role of the Nitrogen Source on the Expression of a Reporter Gene under the Control of the Aox1 Promoter
Denis Baurain, Monique Dinant, Nadine Coosemans, and René F. Matagne
Plant Physiol. 2003 March; 131(3): 1418–1430. doi: 10.1104/pp.013409.
PMCID: PMC166901
Plants Interacting with Other Organisms
A Diffusible Factor from Arbuscular Mycorrhizal Fungi Induces Symbiosis-Specific MtENOD11 Expression in Roots of Medicago truncatula
Sonja Kosuta, Mireille Chabaud, Géraldine Lougnon, Clare Gough, Jean Dénarié, David G. Barker, and Guillaume Bécard
Plant Physiol. 2003 March; 131(3): 952–962. doi: 10.1104/pp.011882.
PMCID: PMC166861
Nod Factor Elicits Two Separable Calcium Responses in Medicago truncatula Root Hair Cells
Sidney L. Shaw and Sharon R. Long
Plant Physiol. 2003 March; 131(3): 976–984. doi: 10.1104/pp.005546.
PMCID: PMC166863
Dual Genetic Pathways Controlling Nodule Number in Medicago truncatula
R. Varma Penmetsa, Julia A. Frugoli, Lucinda S. Smith, Sharon R. Long, and Douglas R. Cook
Plant Physiol. 2003 March; 131(3): 998–1008. doi: 10.1104/pp.015677.
PMCID: PMC166865
The Sym35 Gene Required for Root Nodule Development in Pea Is an Ortholog of Nin from Lotus japonicus
Alexey Y. Borisov, Lene H. Madsen, Viktor E. Tsyganov, Yosuke Umehara, Vera A. Voroshilova, Arsen O. Batagov, Niels Sandal, Anita Mortensen, Leif Schauser, Noel Ellis, Igor A. Tikhonovich, and Jens Stougaard
Plant Physiol. 2003 March; 131(3): 1009–1017. doi: 10.1104/pp.102.016071.
PMCID: PMC166866
Identification and Characterization of Nodulation-Signaling Pathway 2, a Gene of Medicago truncatula Involved in Nod Factor Signaling
Giles E.D. Oldroyd and Sharon R. Long
Plant Physiol. 2003 March; 131(3): 1027–1032. doi: 10.1104/pp.102.010710.
PMCID: PMC166868
crinkle, a Novel Symbiotic Mutant That Affects the Infection Thread Growth and Alters the Root Hair, Trichome, and Seed Development in Lotus japonicus
Myra L. Tansengco, Makoto Hayashi, Masayoshi Kawaguchi, Haruko Imaizumi-Anraku, and Yoshikatsu Murooka
Plant Physiol. 2003 March; 131(3): 1054–1063. doi: 10.1104/pp.102.017020.
PMCID: PMC166871
Proteome Analysis. Novel Proteins Identified at the Peribacteroid Membrane from Lotus japonicus Root Nodules
Stefanie Wienkoop and Gerhard Saalbach
Plant Physiol. 2003 March; 131(3): 1080–1090. doi: 10.1104/pp.102.015362.
PMCID: PMC166873
Expression of the Apyrase-Like APY1 Genes in Roots of Medicago truncatula Is Induced Rapidly and Transiently by Stress and Not by Sinorhizobium meliloti or Nod Factors
Maria-Teresa Navarro-Gochicoa, Sylvie Camut, Andreas Niebel, and Julie V. Cullimore
Plant Physiol. 2003 March; 131(3): 1124–1136. doi: 10.1104/pp.102.010926.
PMCID: PMC166876
Pto Mutants Differentially Activate Prf-Dependent, avrPto-Independent Resistance and Gene-for-
Gene Resistance
Fangming Xiao, Ming Lu, Jianxiong Li, Tiehan Zhao, Seung Young Yi, Venkatappa K. Thara, Xiaoyan Tang, and Jian-Min Zhou
Plant Physiol. 2003 March; 131(3): 1239–1249. doi: 10.1104/pp.016113.
PMCID: PMC166884
Isolation and Properties of Floral Defensins from Ornamental Tobacco and Petunia
Fung T. Lay, Filippa Brugliera, and Marilyn A. Anderson
Plant Physiol. 2003 March; 131(3): 1283–1293. doi: 10.1104/pp.102.016626.
PMCID: PMC166888
Root Factors Induce Mitochondrial-Related Gene Expression and Fungal Respiration during the Developmental Switch from Asymbiosis to Presymbiosis in the Arbuscular Mycorrhizal Fungus Gigaspora rosea
M'Barek Tamasloukht, Nathalie Séjalon-Delmas, Astrid Kluever, Alain Jauneau, Christophe Roux, Guillaume Bécard, and Philipp Franken
Plant Physiol. 2003 March; 131(3): 1468–1478. doi: 10.1104/pp.012898.
PMCID: PMC166906
Whole Plant and Ecophysiology
In Vivo Gas Exchange Measurement of the Site and Dynamics of Nitrate Reduction in Soybean
Yan-Ping Cen and David B. Layzell
Plant Physiol. 2003 March; 131(3): 1147–1156. doi: 10.1104/pp.102.019430.
PMCID: PMC166878
Bioinformatics
Arabidopsis Proteins Containing Similarity to the Universal Stress Protein Domain of Bacteria
David Kerk, Joshua Bulgrien, Douglas W. Smith, and Michael Gribskov
Plant Physiol. 2003 March; 131(3): 1209–1219. doi: 10.1104/pp.102.016006.
PMCID: PMC166881
Genome Analysis
Analysis of the Plastidic phosphate translocator Gene Family in Arabidopsis and Identification of New phosphate translocator-Homologous Transporters, Classified by Their Putative Substrate-Binding Site
Silke Knappe, Ulf-Ingo Flügge, and Karsten Fischer
Plant Physiol. 2003 March; 131(3): 1178–1190. doi: 10.1104/pp.016519.
PMCID: PMC166879
Analysis of the Small GTPase Gene Superfamily of Arabidopsis
Vanessa Vernoud, Amy C. Horton, Zhenbiao Yang, and Erik Nielsen
Plant Physiol. 2003 March; 131(3): 1191–1208. doi: 10.1104/pp.013052.
PMCID: PMC166880
Correction
Correction
Plant Physiol. 2003 March; 131(3): 1508.
PMCID: PMC166859
Corrects: Olivier Loudet, et al. Quantitative Trait Loci Analysis of Nitrogen Use Efficiency in Arabidopsis. Plant Physiol. 2003 January; 131(1): 345–358.
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