| | This journal provides immediate access to some articles. Update T-DNA Binary Vectors and Systems Lan-Ying Lee and Stanton B. Gelvin PMCID: PMC2245830 On the Inside On the Inside Peter V. Minorsky PMCID: PMC2245824 Bioinformatics AffyTrees: Facilitating Comparative Analysis of Affymetrix Plant Microarray Chips Tancred Frickey, Vagner Augusto Benedito, Michael Udvardi, and Georg Weiller PMCID: PMC2245853 Breakthrough Technologies Firefly Luciferase Complementation Imaging Assay for Protein-Protein Interactions in Plants Huamin Chen, Yan Zou, Yulei Shang, Huiqiong Lin, Yujing Wang, Run Cai, Xiaoyan Tang, and Jian-Min Zhou PMCID: PMC2245818 Genome Analysis Genomic Survey and Gene Expression Analysis of the Basic Leucine Zipper Transcription Factor Family in Rice Aashima Nijhawan, Mukesh Jain, Akhilesh K. Tyagi, and Jitendra P. Khurana PMCID: PMC2245831 Evolutionary Radiation Pattern of Novel Protein Phosphatases Revealed by Analysis of Protein Data from the Completely Sequenced Genomes of Humans, Green Algae, and Higher Plants David Kerk, George Templeton, and Greg B.G. Moorhead PMCID: PMC2245839 Research Articles Biochemical Processes and Macromolecular Structures Metabolomics Reveals Novel Pathways and Differential Mechanistic and Elicitor-Specific Responses in Phenylpropanoid and Isoflavonoid Biosynthesis in Medicago truncatula Cell Cultures Mohamed A. Farag, David V. Huhman, Richard A. Dixon, and Lloyd W. Sumner PMCID: PMC2245840 Molecular Cloning and Characterization of a Vacuolar Class III Peroxidase Involved in the Metabolism of Anticancer Alkaloids in Catharanthus roseus Maria Manuela R. Costa, Frederique Hilliou, Patrícia Duarte, Luís Gustavo Pereira, Iolanda Almeida, Mark Leech, Johan Memelink, Alfonso Ros Barceló, and Mariana Sottomayor PMCID: PMC2245823 Identification, Biochemical Characterization, and Subcellular Localization of Allantoate Amidohydrolases from Arabidopsis and Soybean Andrea K. Werner, Imogen A. Sparkes, Tina Romeis, and Claus-Peter Witte PMCID: PMC2245841 An Arabidopsis Purple Acid Phosphatase with Phytase Activity Increases Foliar Ascorbate Wenyan Zhang, Hope A. Gruszewski, Boris I. Chevone, and Craig L. Nessler PMCID: PMC2245855 Molecular Dissection of Variation in Carbohydrate Metabolism Related to Water-Soluble Carbohydrate Accumulation in Stems of Wheat Gang-Ping Xue, C. Lynne McIntyre, Colin L.D. Jenkins, Donna Glassop, Anthony F. van Herwaarden, and Ray Shorter PMCID: PMC2245852 Structural, Biochemical, and Phylogenetic Analyses Suggest That Indole-3-Acetic Acid Methyltransferase Is an Evolutionarily Ancient Member of the SABATH Family Nan Zhao, Jean-Luc Ferrer, Jeannine Ross, Ju Guan, Yue Yang, Eran Pichersky, Joseph P. Noel, and Feng Chen PMCID: PMC2245846 Quantitative Conversion of Phytate to Inorganic Phosphorus in Soybean Seeds Expressing a Bacterial Phytase Kristin D. Bilyeu, Peiyu Zeng, Patricia Coello, Zhanyuan J. Zhang, Hari B. Krishnan, April Bailey, Paul R. Beuselinck, and Joe C. Polacco PMCID: PMC2245832 Dual Targeting of Arabidopsis HOLOCARBOXYLASE SYNTHETASE1: A Small Upstream Open Reading Frame Regulates Translation Initiation and Protein Targeting Juliette Puyaubert, Laurence Denis, and Claude Alban PMCID: PMC2245827 Functions of Chloroplastic Adenylate Kinases in Arabidopsis Peter Robert Lange, Claudia Geserick, Gilbert Tischendorf, and Rita Zrenner PMCID: PMC2245825 Bioenergetics and Photosynthesis Environmental Effects on Oxygen Isotope Enrichment of Leaf Water in Cotton Leaves Francesco Ripullone, Naoko Matsuo, Hilary Stuart-Williams, Suan Chin Wong, Marco Borghetti, Makoto Tani, and Graham Farquhar PMCID: PMC2245819 The Contribution of Photosynthesis to the Red Light Response of Stomatal Conductance Irene Baroli, G. Dean Price, Murray R. Badger, and Susanne von Caemmerer PMCID: PMC2245822 Cell Biology and Signal Transduction Cytoplasmic Calcium Increases in Response to Changes in the Gravity Vector in Hypocotyls and Petioles of Arabidopsis Seedlings Masatsugu Toyota, Takuya Furuichi, Hitoshi Tatsumi, and Masahiro Sokabe PMCID: PMC2245848 Sucrose Transporter StSUT4 from Potato Affects Flowering, Tuberization, and Shade Avoidance Response Izabela A. Chincinska, Johannes Liesche, Undine Krügel, Justyna Michalska, Peter Geigenberger, Bernhard Grimm, and Christina Kühn PMCID: PMC2245842 Glutamate Receptor Subtypes Evidenced by Differences in Desensitization and Dependence on the GLR3.3 and GLR3.4 Genes Nicholas R. Stephens, Zhi Qi, and Edgar P. Spalding PMCID: PMC2245834 Specificity of RCN1-Mediated Protein Phosphatase 2A Regulation in Meristem Organization and Stress Response in Roots Joshua J. Blakeslee, Hong-Wei Zhou, Jeffrey T. Heath, Kyle R. Skottke, Jorge A. Rodriguez Barrios, Su-Yang Liu, and Alison DeLong PMCID: PMC2245836 Development and Hormone Action Pectin Methyl Esterase Inhibits Intrusive and Symplastic Cell Growth in Developing Wood Cells of Populus Anna Siedlecka, Susanne Wiklund, Marie-Amélie Péronne, Fabienne Micheli, Joanna Leśniewska, Ingmar Sethson, Ulf Edlund, Luc Richard, Björn Sundberg, and Ewa J. Mellerowicz PMCID: PMC2245829 Arabidopsis Genes AS1, AS2, and JAG Negatively Regulate Boundary-Specifying Genes to Promote Sepal and Petal Development Ben Xu, Ziyu Li, Yan Zhu, Hua Wang, Hong Ma, Aiwu Dong, and Hai Huang PMCID: PMC2245835 Environmental Stress and Adaptation to Stress UV-B Signaling Pathways with Different Fluence-Rate Response Profiles Are Distinguished in Mature Arabidopsis Leaf Tissue by Requirement for UVR8, HY5, and HYH Bobby A. Brown and Gareth I. Jenkins PMCID: PMC2245850 The Arabidopsis AtOPT3 Protein Functions in Metal Homeostasis and Movement of Iron to Developing Seeds Minviluz G. Stacey, Ami Patel, William E. McClain, Melanie Mathieu, Melissa Remley, Elizabeth E. Rogers, Walter Gassmann, Dale G. Blevins, and Gary Stacey PMCID: PMC2245856 Cell Wall Polysaccharides Are Specifically Involved in the Exclusion of Aluminum from the Rice Root Apex Jian Li Yang, Ya Ying Li, Yue Jiao Zhang, Shan Shan Zhang, Yun Rong Wu, Ping Wu, and Shao Jian Zheng PMCID: PMC2245838 The Arabidopsis Kinase-Associated Protein Phosphatase Regulates Adaptation to Na+ Stress Yuzuki Manabe, Ray A. Bressan, Tao Wang, Fang Li, Hisashi Koiwa, Irina Sokolchik, Xia Li, and Albino Maggio PMCID: PMC2245828 Overexpression of AtMYB44 Enhances Stomatal Closure to Confer Abiotic Stress Tolerance in Transgenic Arabidopsis Choonkyun Jung, Jun Sung Seo, Sang Won Han, Yeon Jong Koo, Chung Ho Kim, Sang Ik Song, Baek Hie Nahm, Yang Do Choi, and Jong-Joo Cheong PMCID: PMC2245844 Functional Coexpression of the Mitochondrial Alternative Oxidase and Uncoupling Protein Underlies Thermoregulation in the Thermogenic Florets of Skunk Cabbage Yoshihiko Onda, Yoshiaki Kato, Yukie Abe, Takanori Ito, Miyuki Morohashi, Yuka Ito, Megumi Ichikawa, Kazushige Matsukawa, Yusuke Kakizaki, Hiroyuki Koiwa, and Kikukatsu Ito PMCID: PMC2245847 Core Genome Responses Involved in Acclimation to High Temperature Jane Larkindale and Elizabeth Vierling PMCID: PMC2245833 Genetics, Genomics, and Molecular Evolution Characterization of the PHO1 Gene Family and the Responses to Phosphate Deficiency of Physcomitrella patens Yong Wang, David Secco, and Yves Poirier PMCID: PMC2245821 Plants Interacting with Other Organisms Pyrroloquinoline Quinone Is a Plant Growth Promotion Factor Produced by Pseudomonas fluorescens B16 Okhee Choi, Jinwoo Kim, Jung-Gun Kim, Yeonhwa Jeong, Jae Sun Moon, Chang Seuk Park, and Ingyu Hwang PMCID: PMC2245851 Transgenic Expression of a Fungal endo-Polygalacturonase Increases Plant Resistance to Pathogens and Reduces Auxin Sensitivity Simone Ferrari, Roberta Galletti, Daniela Pontiggia, Cinzia Manfredini, Vincenzo Lionetti, Daniela Bellincampi, Felice Cervone, and Giulia De Lorenzo PMCID: PMC2245817 Characterization of the Interaction of a Novel Stagonospora nodorum Host-Selective Toxin with a Wheat Susceptibility Gene Timothy L. Friesen, Zengcui Zhang, Peter S. Solomon, Richard P. Oliver, and Justin D. Faris PMCID: PMC2245837 Kinetics and Mechanism of Dionaea muscipula Trap Closing Alexander G. Volkov, Tejumade Adesina, Vladislav S. Markin, and Emil Jovanov PMCID: PMC2245849 Salicylic Acid and Systemic Acquired Resistance Play a Role in Attenuating Crown Gall Disease Caused by Agrobacterium tumefaciens Ajith Anand, Srinivasa Rao Uppalapati, Choong-Min Ryu, Stacy N. Allen, Li Kang, Yuhong Tang, and Kirankumar S. Mysore PMCID: PMC2245820 Altered Profile of Secondary Metabolites in the Root Exudates of Arabidopsis ATP-Binding Cassette Transporter Mutants Dayakar V. Badri, Victor M. Loyola-Vargas, Corey D. Broeckling, Clelia De-la-Peña, Michal Jasinski, Diana Santelia, Enrico Martinoia, Lloyd W. Sumner, Lois M. Banta, Frank Stermitz, and Jorge M. Vivanco PMCID: PMC2245854 Systems Biology, Molecular Biology, and Gene Regulation The ACA10 Ca2+-ATPase Regulates Adult Vegetative Development and Inflorescence Architecture in Arabidopsis Lynn George, Shawn M. Romanowsky, Jeffrey F. Harper, and Robert A. Sharrock PMCID: PMC2245845 The Phosphoproteome of a Chlamydomonas reinhardtii Eyespot Fraction Includes Key Proteins of the Light Signaling Pathway Volker Wagner, Katharina Ullmann, Anne Mollwo, Marc Kaminski, Maria Mittag, and Georg Kreimer PMCID: PMC2245826 The NADPH-Dependent Thioredoxin Reductase/Thioredoxin System in Germinating Barley Seeds: Gene Expression, Protein Profiles, and Interactions between Isoforms of Thioredoxin h and Thioredoxin Reductase Azar Shahpiri, Birte Svensson, and Christine Finnie PMCID: PMC2245843 |
