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Volume 139(1);  September 2005
On the Inside
On the Inside
Peter V. Minorsky
Plant Physiol. 2005 September; 139(1): 1–2. doi: 10.1104/pp.104.900173.
PMCID: PMC1203351
Editorial
Plant Physiology. The Next 5 Years
Don Ort
Plant Physiol. 2005 September; 139(1): 3–4. doi: 10.1104/pp.104.900169.
PMCID: PMC1203352
Bioinformatics
Whole-Genome Validation of High-Information-Content Fingerprinting
William M. Nelson, Arvind K. Bharti, Ed Butler, Fusheng Wei, Galina Fuks, HyeRan Kim, Rod A. Wing, Joachim Messing, and Carol Soderlund
Plant Physiol. 2005 September; 139(1): 27–38. doi: 10.1104/pp.105.061978.
PMCID: PMC1203355
Genome Analysis
Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis
Tomasz Czechowski, Mark Stitt, Thomas Altmann, Michael K. Udvardi, and Wolf-Rüdiger Scheible
Plant Physiol. 2005 September; 139(1): 5–17. doi: 10.1104/pp.105.063743.
PMCID: PMC1203353
Transcription Factor Families Have Much Higher Expansion Rates in Plants than in Animals
Shin-Han Shiu, Ming-Che Shih, and Wen-Hsiung Li
Plant Physiol. 2005 September; 139(1): 18–26. doi: 10.1104/pp.105.065110.
PMCID: PMC1203354
Research Articles
Biochemical Processes and Macromolecular Structures
A Comprehensive Analysis of the NADP-Malic Enzyme Gene Family of Arabidopsis
Mariel C. Gerrard Wheeler, Marcos A. Tronconi, María F. Drincovich, Carlos S. Andreo, Ulf-Ingo Flügge, and Verónica G. Maurino
Plant Physiol. 2005 September; 139(1): 39–51. doi: 10.1104/pp.105.065953.
PMCID: PMC1203356
Chlorophyll Breakdown in Senescent Arabidopsis Leaves. Characterization of Chlorophyll Catabolites and of Chlorophyll Catabolic Enzymes Involved in the Degreening Reaction
Adriana Pružinská, Gaby Tanner, Sylvain Aubry, Iwona Anders, Simone Moser, Thomas Müller, Karl-Hans Ongania, Bernhard Kräutler, Ji-Young Youn, Sarah J. Liljegren, and Stefan Hörtensteiner
Plant Physiol. 2005 September; 139(1): 52–63. doi: 10.1104/pp.105.065870.
PMCID: PMC1203357
Mitochondria-Driven Changes in Leaf NAD Status Exert a Crucial Influence on the Control of Nitrate Assimilation and the Integration of Carbon and Nitrogen Metabolism
Christelle Dutilleul, Caroline Lelarge, Jean-Louis Prioul, Rosine De Paepe, Christine H. Foyer, and Graham Noctor
Plant Physiol. 2005 September; 139(1): 64–78. doi: 10.1104/pp.105.066399.
PMCID: PMC1203358
Two FAD3 Desaturase Genes Control the Level of Linolenic Acid in Flax Seed
Patricia Vrinten, Zhiyuan Hu, Mary-Ann Munchinsky, Gordon Rowland, and Xiao Qiu
Plant Physiol. 2005 September; 139(1): 79–87. doi: 10.1104/pp.105.064451.
PMCID: PMC1203359
Differential Elicitation of Two Processing Proteases Controls the Processing Pattern of the Trypsin Proteinase Inhibitor Precursor in Nicotiana attenuata
Martin Horn, Aparna G. Patankar, Jorge A. Zavala, Jianqiang Wu, Lucie Dolečková-Marešová, Milana Vůjtěchová, Michael Mareš, and Ian T. Baldwin
Plant Physiol. 2005 September; 139(1): 375–388. doi: 10.1104/pp.105.064006.
PMCID: PMC1203386
Cellular Levels of Glutamyl-tRNA Reductase and Glutamate-1-Semialdehyde Aminotransferase Do Not Control Chlorophyll Synthesis in Chlamydomonas reinhardtii
Luiza A. Nogaj, Alaka Srivastava, Robert van Lis, and Samuel I. Beale
Plant Physiol. 2005 September; 139(1): 389–396. doi: 10.1104/pp.105.067009.
PMCID: PMC1203387
Evidence for In Vitro Binding of Pectin Side Chains to Cellulose
Agata W. Zykwinska, Marie-Christine J. Ralet, Catherine D. Garnier, and Jean-François J. Thibault
Plant Physiol. 2005 September; 139(1): 397–407. doi: 10.1104/pp.105.065912.
PMCID: PMC1203388
Bioenergetics and Photosynthesis
Differential Expression of the Arabidopsis Cytochrome c Genes Cytc-1 and Cytc-2. Evidence for the Involvement of TCP-Domain Protein-Binding Elements in Anther- and Meristem-Specific Expression of the Cytc-1 Gene
Elina Welchen and Daniel H. Gonzalez
Plant Physiol. 2005 September; 139(1): 88–100. doi: 10.1104/pp.105.065920.
PMCID: PMC1203360
The Mutant of sll1961, Which Encodes a Putative Transcriptional Regulator, Has a Defect in Regulation of Photosystem Stoichiometry in the Cyanobacterium Synechocystis sp. PCC 6803
Tamaki Fujimori, Mieko Higuchi, Hanayo Sato, Hiroshi Aiba, Masayuki Muramatsu, Yukako Hihara, and Kintake Sonoike
Plant Physiol. 2005 September; 139(1): 408–416. doi: 10.1104/pp.105.064782.
PMCID: PMC1203389
Cell Biology and Signal Transduction
A Plant-Specific Protein Essential for Blue-Light-Induced Chloroplast Movements
Stacy L. DeBlasio, Darron L. Luesse, and Roger P. Hangarter
Plant Physiol. 2005 September; 139(1): 101–114. doi: 10.1104/pp.105.061887.
PMCID: PMC1203361
Cosuppression of Eukaryotic Release Factor 1-1 in Arabidopsis Affects Cell Elongation and Radial Cell Division
Katherine Anne Petsch, Joshua Mylne, and José Ramón Botella
Plant Physiol. 2005 September; 139(1): 115–126. doi: 10.1104/pp.105.062695.
PMCID: PMC1203362
Activation of a Novel Transcription Factor through Phosphorylation by WIPK, a Wound-Induced Mitogen-Activated Protein Kinase in Tobacco Plants
Yun-Kiam Yap, Yutaka Kodama, Frank Waller, Kwi Mi Chung, Hirokazu Ueda, Kimiyo Nakamura, Maren Oldsen, Hiroshi Yoda, Yube Yamaguchi, and Hiroshi Sano
Plant Physiol. 2005 September; 139(1): 127–137. doi: 10.1104/pp.105.065656.
PMCID: PMC1203363
Novel CIPK1-Associated Proteins in Arabidopsis Contain an Evolutionarily Conserved C-Terminal Region That Mediates Nuclear Localization
Sung Han Ok, Hye Jin Jeong, Jung Myung Bae, Jeong-Sheop Shin, Sheng Luan, and Kyung-Nam Kim
Plant Physiol. 2005 September; 139(1): 138–150. doi: 10.1104/pp.105.065649.
PMCID: PMC1203364
An Auxilin-Like J-Domain Protein, JAC1, Regulates Phototropin-Mediated Chloroplast Movement in Arabidopsis
Noriyuki Suetsugu, Takatoshi Kagawa, and Masamitsu Wada
Plant Physiol. 2005 September; 139(1): 151–162. doi: 10.1104/pp.105.067371.
PMCID: PMC1203365
TPK1 Is a Vacuolar Ion Channel Different from the Slow-Vacuolar Cation Channel
Hermann Bihler, Christian Eing, Simon Hebeisen, Anja Roller, Katrin Czempinski, and Adam Bertl
Plant Physiol. 2005 September; 139(1): 417–424. doi: 10.1104/pp.105.065599.
PMCID: PMC1203390
A Copper Chaperone for Superoxide Dismutase That Confers Three Types of Copper/Zinc Superoxide Dismutase Activity in Arabidopsis
Chiung-Chih Chu, Wen-Chi Lee, Wen-Yu Guo, Shu-Mei Pan, Lih-Jen Chen, Hsou-min Li, and Tsung-Luo Jinn
Plant Physiol. 2005 September; 139(1): 425–436. doi: 10.1104/pp.105.065284.
PMCID: PMC1203391
Development and Hormone Action
TANMEI/EMB2757 Encodes a WD Repeat Protein Required for Embryo Development in Arabidopsis
Kazutoshi Yamagishi, Noriko Nagata, Kelly Matsudaira Yee, Siobhan A. Braybrook, Julie Pelletier, Shozo Fujioka, Shigeo Yoshida, Robert L. Fischer, Robert B. Goldberg, and John J. Harada
Plant Physiol. 2005 September; 139(1): 163–173. doi: 10.1104/pp.105.060467.
PMCID: PMC1203366
Functional Conservation of PISTILLATA Activity in a Pea Homolog Lacking the PI Motif
Ana Berbel, Cristina Navarro, Cristina Ferrándiz, Luis Antonio Cañas, José-Pío Beltrán, and Francisco Madueño
Plant Physiol. 2005 September; 139(1): 174–185. doi: 10.1104/pp.104.057687.
PMCID: PMC1203367
Overexpression of TAPETUM DETERMINANT1 Alters the Cell Fates in the Arabidopsis Carpel and Tapetum via Genetic Interaction with EXCESS MICROSPOROCYTES1/EXTRA SPOROGENOUS CELLS
Shu-Lan Yang, Lixi Jiang, Ching San Puah, Li-Fen Xie, Xue-Qin Zhang, Li-Qun Chen, Wei-Cai Yang, and De Ye
Plant Physiol. 2005 September; 139(1): 186–191. doi: 10.1104/pp.105.063529.
PMCID: PMC1203368
Interaction of Auxin and ERECTA in Elaborating Arabidopsis Inflorescence Architecture Revealed by the Activation Tagging of a New Member of the YUCCA Family Putative Flavin Monooxygenases
Claire Woodward, Shannon M. Bemis, Emi J. Hill, Shinichiro Sawa, Tomokazu Koshiba, and Keiko U. Torii
Plant Physiol. 2005 September; 139(1): 192–203. doi: 10.1104/pp.105.063495.
PMCID: PMC1203369
Aleurone Cell Identity Is Suppressed following Connation in Maize Kernels
Jane Geisler-Lee and Daniel R. Gallie
Plant Physiol. 2005 September; 139(1): 204–212. doi: 10.1104/pp.105.064295.
PMCID: PMC1203370
Gibberellin Biosynthesis in Developing Pumpkin Seedlings
Theo Lange, Jeannette Kappler, Andreas Fischer, Andrea Frisse, Tania Padeffke, Sabine Schmidtke, and Maria João Pimenta Lange
Plant Physiol. 2005 September; 139(1): 213–223. doi: 10.1104/pp.105.064162.
PMCID: PMC1203371
Nitrogen Deprivation Stimulates Symbiotic Gland Development in Gunnera manicata
Wan-Ling Chiu, Gerald A. Peters, Germain Levieille, Patrick C. Still, Sarah Cousins, Bruce Osborne, and Jeff Elhai
Plant Physiol. 2005 September; 139(1): 224–230. doi: 10.1104/pp.105.064931.
PMCID: PMC1203372
The Arabidopsis PEX12 Gene Is Required for Peroxisome Biogenesis and Is Essential for Development
Jilian Fan, Sheng Quan, Travis Orth, Chie Awai, Joanne Chory, and Jianping Hu
Plant Physiol. 2005 September; 139(1): 231–239. doi: 10.1104/pp.105.066811.
PMCID: PMC1203373
Quantitative Statistical Analysis of cis-Regulatory Sequences in ABA/VP1- and CBF/DREB1-Regulated Genes of Arabidopsis
Masaharu Suzuki, Matthew G. Ketterling, and Donald R. McCarty
Plant Physiol. 2005 September; 139(1): 437–447. doi: 10.1104/pp.104.058412.
PMCID: PMC1203392
A Brassinosteroid-Hypersensitive Mutant of BAK1 Indicates That a Convergence of Photomorphogenic and Hormonal Signaling Modulates Phototropism
Craig W. Whippo and Roger P. Hangarter
Plant Physiol. 2005 September; 139(1): 448–457. doi: 10.1104/pp.105.064444.
PMCID: PMC1203393
Environmental Stress and Adaptation
CML24, Regulated in Expression by Diverse Stimuli, Encodes a Potential Ca2+ Sensor That Functions in Responses to Abscisic Acid, Daylength, and Ion Stress
Nikkí A. Delk, Keith A. Johnson, Naweed I. Chowdhury, and Janet Braam
Plant Physiol. 2005 September; 139(1): 240–253. doi: 10.1104/pp.105.062612.
PMCID: PMC1203374
Lateral Diffusion of CO2 in Leaves Is Not Sufficient to Support Photosynthesis
James I.L. Morison, Emily Gallouët, Tracy Lawson, Gabriel Cornic, Raphaèle Herbin, and Neil R. Baker
Plant Physiol. 2005 September; 139(1): 254–266. doi: 10.1104/pp.105.062950.
PMCID: PMC1203375
Enhancing Arabidopsis Salt and Drought Stress Tolerance by Chemical Priming for Its Abscisic Acid Responses
Gabor Jakab, Jurriaan Ton, Victor Flors, Laurent Zimmerli, Jean-Pierre Métraux, and Brigitte Mauch-Mani
Plant Physiol. 2005 September; 139(1): 267–274. doi: 10.1104/pp.105.065698.
PMCID: PMC1203376
The Root Tip and Accelerating Region Suppress Elongation of the Decelerating Region without any Effects on Cell Turgor in Primary Roots of Maize under Water Stress
Yumi Shimazaki, Taiichiro Ookawa, and Tadashi Hirasawa
Plant Physiol. 2005 September; 139(1): 458–465. doi: 10.1104/pp.105.062091.
PMCID: PMC1203394
Effects of Water Stress on Respiration in Soybean Leaves
Miquel Ribas-Carbo, Nicolas L. Taylor, Larry Giles, Silvia Busquets, Patrick M. Finnegan, David A. Day, Hans Lambers, Hipólito Medrano, Joseph A. Berry, and Jaume Flexas
Plant Physiol. 2005 September; 139(1): 466–473. doi: 10.1104/pp.105.065565.
PMCID: PMC1203395
Diurnal and Seasonal Variation of Isoprene Biosynthesis-Related Genes in Grey Poplar Leaves
Sabine Mayrhofer, Markus Teuber, Ina Zimmer, Sandrine Louis, Robert J. Fischbach, and Jörg-Peter Schnitzler
Plant Physiol. 2005 September; 139(1): 474–484. doi: 10.1104/pp.105.066373.
PMCID: PMC1203396
The Capacity for Thermal Protection of Photosynthetic Electron Transport Varies for Different Monoterpenes in Quercus ilex
Lucian O. Copolovici, Iolanda Filella, Joan Llusià, Ülo Niinemets, and Josep Peñuelas
Plant Physiol. 2005 September; 139(1): 485–496. doi: 10.1104/pp.105.065995.
PMCID: PMC1203397
Submergence-Induced Morphological, Anatomical, and Biochemical Responses in a Terrestrial Species Affect Gas Diffusion Resistance and Photosynthetic Performance
Liesje Mommer, Thijs L. Pons, Mieke Wolters-Arts, Jan Henk Venema, and Eric J.W. Visser
Plant Physiol. 2005 September; 139(1): 497–508. doi: 10.1104/pp.105.064725.
PMCID: PMC1203398
Genetics, Genomics, and Molecular Evolution
Dedifferentiation of Tobacco Cells Is Associated with Ribosomal RNA Gene Hypomethylation, Increased Transcription, and Chromatin Alterations
Blazena Koukalova, Miloslava Fojtova, Kar Yoong Lim, Jaroslav Fulnecek, Andrew Rowland Leitch, and Ales Kovarik
Plant Physiol. 2005 September; 139(1): 275–286. doi: 10.1104/pp.105.061788.
PMCID: PMC1203377
A Novel Plant Major Intrinsic Protein in Physcomitrella patens Most Similar to Bacterial Glycerol Channels
Sofia Gustavsson, Anne-Sophie Lebrun, Kristina Nordén, François Chaumont, and Urban Johanson
Plant Physiol. 2005 September; 139(1): 287–295. doi: 10.1104/pp.105.063198.
PMCID: PMC1203378
Loss of Function of OsDCL1 Affects MicroRNA Accumulation and Causes Developmental Defects in Rice
Bin Liu, PingChuan Li, Xin Li, ChunYan Liu, ShouYun Cao, ChengCai Chu, and XiaoFeng Cao
Plant Physiol. 2005 September; 139(1): 296–305. doi: 10.1104/pp.105.063420.
PMCID: PMC1203379
The Transcribed 165-bp CentO Satellite Is the Major Functional Centromeric Element in the Wild Rice Species Oryza punctata
Wenli Zhang, Chuandeng Yi, Weidong Bao, Bin Liu, Jiajun Cui, Hengxiu Yu, Xiaofeng Cao, Minghong Gu, Min Liu, and Zhukuan Cheng
Plant Physiol. 2005 September; 139(1): 306–315. doi: 10.1104/pp.105.064147.
PMCID: PMC1203380
Genome-Wide Identification of Potential Plant E2F Target Genes
Klaas Vandepoele, Kobe Vlieghe, Kobe Florquin, Lars Hennig, Gerrit T.S. Beemster, Wilhelm Gruissem, Yves Van de Peer, Dirk Inzé, and Lieven De Veylder
Plant Physiol. 2005 September; 139(1): 316–328. doi: 10.1104/pp.105.066290.
PMCID: PMC1203381
Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships
Eva Henriksson, Anna S.B. Olsson, Henrik Johannesson, Henrik Johansson, Johannes Hanson, Peter Engström, and Eva Söderman
Plant Physiol. 2005 September; 139(1): 509–518. doi: 10.1104/pp.105.063461.
PMCID: PMC1203399
Plants Interacting with Other Organisms
Organization and Metabolism of Plastids and Mitochondria in Arbuscular Mycorrhizal Roots of Medicago truncatula
Swanhild Lohse, Willibald Schliemann, Christian Ammer, Joachim Kopka, Dieter Strack, and Thomas Fester
Plant Physiol. 2005 September; 139(1): 329–340. doi: 10.1104/pp.105.061457.
PMCID: PMC1203382
NpPDR1, a Pleiotropic Drug Resistance-Type ATP-Binding Cassette Transporter from Nicotiana plumbaginifolia, Plays a Major Role in Plant Pathogen Defense
Yvan Stukkens, Alain Bultreys, Sébastien Grec, Tomasz Trombik, Delphine Vanham, and Marc Boutry
Plant Physiol. 2005 September; 139(1): 341–352. doi: 10.1104/pp.105.062372.
PMCID: PMC1203383
Ectopic Expression of Constitutively Activated RACB in Barley Enhances Susceptibility to Powdery Mildew and Abiotic Stress
Holger Schultheiss, Götz Hensel, Jafargholi Imani, Sylvia Broeders, Uwe Sonnewald, Karl-Heinz Kogel, Jochen Kumlehn, and Ralph Hückelhoven
Plant Physiol. 2005 September; 139(1): 353–362. doi: 10.1104/pp.105.066613.
PMCID: PMC1203384
What Do Microbes Encounter at the Plant Surface? Chemical Composition of Pea Leaf Cuticular Waxes
Franka Gniwotta, Gerd Vogg, Vanessa Gartmann, Tim L.W. Carver, Markus Riederer, and Reinhard Jetter
Plant Physiol. 2005 September; 139(1): 519–530. doi: 10.1104/pp.104.053579.
PMCID: PMC1203400
Whole Plant and Ecophysiology
Cassava Plants with a Depleted Cyanogenic Glucoside Content in Leaves and Tubers. Distribution of Cyanogenic Glucosides, Their Site of Synthesis and Transport, and Blockage of the Biosynthesis by RNA Interference Technology
Kirsten Jørgensen, Søren Bak, Peter Kamp Busk, Charlotte Sørensen, Carl Erik Olsen, Johanna Puonti-Kaerlas, and Birger Lindberg Møller
Plant Physiol. 2005 September; 139(1): 363–374. doi: 10.1104/pp.105.065904.
PMCID: PMC1203385
ETHY. A Theory of Fruit Climacteric Ethylene Emission
Michel Génard and Barbara Gouble
Plant Physiol. 2005 September; 139(1): 531–545. doi: 10.1104/pp.105.063339.
PMCID: PMC1203401
Do Xylem Fibers Affect Vessel Cavitation Resistance?
Anna L. Jacobsen, Frank W. Ewers, R. Brandon Pratt, William A. Paddock, III, and Stephen D. Davis
Plant Physiol. 2005 September; 139(1): 546–556. doi: 10.1104/pp.104.058404.
PMCID: PMC1203402
Corrections
CORRECTION
Plant Physiol. 2005 September; 139(1): 557. doi: 10.1104/pp.104.900170.
PMCID: PMC1203403
Corrects: Hong Shen, et al. Citrate Secretion Coupled with the Modulation of Soybean Root Tip under Aluminum Stress. Up-Regulation of Transcription, Translation, and Threonine-Oriented Phosphorylation of Plasma Membrane H+-ATPase. Plant Physiol. 2005 May; 138(1): 287–296.
CORRECTION
Plant Physiol. 2005 September; 139(1): 558. doi: 10.1104/pp.104.900171.
PMCID: PMC1203404
Corrects: Takashi Emi, et al. Isolation of a Protein Interacting with Vfphot1a in Guard Cells of Vicia faba. Plant Physiol. 2005 July; 138(3): 1615–1626.
CORRECTION
Plant Physiol. 2005 September; 139(1): 559. doi: 10.1104/pp.104.900172.
PMCID: PMC1203405
Corrects: Aaron M. Rashotte, et al. Basipetal Auxin Transport Is Required for Gravitropism in Roots of Arabidopsis. Plant Physiol. 2000 February; 122(2): 481–490.
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