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Volume 134(3);  March 2004
On the Inside
P. V. Minorsky
Plant Physiol. 2004 March; 134(3): 881–882.
PMCID: PMC1540353
Editor's Choice Series on Agricultural Ethics
Transgenic Maize and the Evolution of Landrace Diversity in Mexico. The Importance of Farmers' Behavior
Mauricio R. Bellon and Julien Berthaud
Plant Physiol. 2004 March; 134(3): 883–888. doi: 10.1104/pp.103.038331.
PMCID: PMC523889
Editor's Choice Series on Sharing Data and Materials
Plant Genome Research Outreach Portal. A Gateway to Plant Genome Research “Outreach” Programs and Activities
Sanford B. Baran, Carolyn J. Lawrence, and Volker Brendel
Plant Physiol. 2004 March; 134(3): 889. doi: 10.1104/pp.103.038414.
PMCID: PMC523890
Update on Calcium and Protein Kinase Signaling
The SOS3 Family of Calcium Sensors and SOS2 Family of Protein Kinases in Arabidopsis
Deming Gong, Yan Guo, Karen S. Schumaker, and Jian-Kang Zhu
Plant Physiol. 2004 March; 134(3): 919–926. doi: 10.1104/pp.103.037440.
PMCID: PMC523892
Update on Sucrose Synthesis/Metabolism
UDP-Glucose Pyrophosphorylase. An Old Protein with New Tricks
Leszek A. Kleczkowski, Matt Geisler, Iwona Ciereszko, and Henrik Johansson
Plant Physiol. 2004 March; 134(3): 912–918. doi: 10.1104/pp.103.036053.
PMCID: PMC523891
Bioinformatics
A New Resource for Cereal Genomics: 22K Barley GeneChip Comes of Age
Timothy J. Close, Steve I. Wanamaker, Rico A. Caldo, Stacy M. Turner, Daniel A. Ashlock, Julie A. Dickerson, Rod A. Wing, Gary J. Muehlbauer, Andris Kleinhofs, and Roger P. Wise
Plant Physiol. 2004 March; 134(3): 960–968. doi: 10.1104/pp.103.034462.
PMCID: PMC389919
Breakthrough Technologies
Robust-LongSAGE (RL-SAGE): A Substantially Improved LongSAGE Method for Gene Discovery and Transcriptome Analysis
Malali Gowda, Chatchawan Jantasuriyarat, Ralph A. Dean, and Guo-Liang Wang
Plant Physiol. 2004 March; 134(3): 890–897. doi: 10.1104/pp.103.034496.
PMCID: PMC389912
Self-Reporting Arabidopsis Expressing pH and [Ca2+] Indicators Unveil Ion Dynamics in the Cytoplasm and in the Apoplast under Abiotic Stress
Dongjie Gao, Marc R. Knight, Anthony J. Trewavas, Burkhard Sattelmacher, and Christoph Plieth
Plant Physiol. 2004 March; 134(3): 898–908. doi: 10.1104/pp.103.032508.
PMCID: PMC389913
Genome Analysis
Genome-Wide Identification of Arabidopsis Coiled-Coil Proteins and Establishment of the ARABI-COIL Database
Annkatrin Rose, Sankaraganesh Manikantan, Shannon J. Schraegle, Michael A. Maloy, Eric A. Stahlberg, and Iris Meier
Plant Physiol. 2004 March; 134(3): 927–939. doi: 10.1104/pp.103.035626.
PMCID: PMC389916
Molecular Analysis of 10 Coding Regions from Arabidopsis That Are Homologous to the MUR3 Xyloglucan Galactosyltransferase
Xuemei Li, Israel Cordero, Jeffrey Caplan, Michael Mølhøj, and Wolf-Dieter Reiter
Plant Physiol. 2004 March; 134(3): 940–950. doi: 10.1104/pp.103.036285.
PMCID: PMC389917
Evaluation of Monocot and Eudicot Divergence Using the Sugarcane Transcriptome
Michel Vincentz, Frank A.A. Cara, Vagner K. Okura, Felipe R. da Silva, Guilherme L. Pedrosa, Adriana S. Hemerly, Adriana N. Capella, Mozart Marins, Paulo C. Ferreira, Suzelei C. França, Laurent Grivet, Andre L. Vettore, Edson L. Kemper, Willian L. Burnquist, Maria L.P. Targon, Walter J. Siqueira, Eiko E. Kuramae, Celso L. Marino, Luis E.A. Camargo, Helaine Carrer, Luis L. Coutinho, Luiz R. Furlan, Manoel V.F. Lemos, Luiz R. Nunes, Suely L. Gomes, Roberto V. Santelli, Maria H. Goldman, Maurício Bacci, Jr., Eder A. Giglioti, Otávio H. Thiemann, Flávio H. Silva, Marie-Anne Van Sluys, Francisco G. Nobrega, Paulo Arruda, and Carlos F.M. Menck
Plant Physiol. 2004 March; 134(3): 951–959. doi: 10.1104/pp.103.033878.
PMCID: PMC389918
Research Articles
Biochemical Processes and Macromolecular Structures
Molecular and Biochemical Analysis of Two cDNA Clones Encoding Dihydroflavonol-4-Reductase from Medicago truncatula
De-Yu Xie, Lisa A. Jackson, John D. Cooper, Daneel Ferreira, and Nancy L. Paiva
Plant Physiol. 2004 March; 134(3): 979–994. doi: 10.1104/pp.103.030221.
PMCID: PMC389921
Poplar Peroxiredoxin Q. A Thioredoxin-Linked Chloroplast Antioxidant Functional in Pathogen Defense
Nicolas Rouhier, Eric Gelhaye, Jose M. Gualberto, Marie-Noelle Jordy, Elisabeth De Fay, Masakazu Hirasawa, Sebastien Duplessis, Stephane D. Lemaire, Pascal Frey, Francis Martin, Wanda Manieri, David B. Knaff, and Jean-Pierre Jacquot
Plant Physiol. 2004 March; 134(3): 1027–1038. doi: 10.1104/pp.103.035865.
PMCID: PMC389925
Functional Characterization of Allantoinase Genes from Arabidopsis and a Nonureide-Type Legume Black Locust
Jaemo Yang and Kyung-Hwan Han
Plant Physiol. 2004 March; 134(3): 1039–1049. doi: 10.1104/pp.103.034637.
PMCID: PMC389928
Evidence That Sucrose Loaded into the Phloem of a Poplar Leaf Is Used Directly by Sucrose Synthase Associated with Various β-Glucan Synthases in the Stem
Teruko Konishi, Yasunori Ohmiya, and Takahisa Hayashi
Plant Physiol. 2004 March; 134(3): 1146–1152. doi: 10.1104/pp.103.033167.
PMCID: PMC389938
The Seeds of Lotus japonicus Lines Transformed with Sense, Antisense, and Sense/Antisense Galactomannan Galactosyltransferase Constructs Have Structurally Altered Galactomannans in Their Endosperm Cell Walls
Mary E. Edwards, Tze-Siang Choo, Cathryn A. Dickson, Catherine Scott, Michael J. Gidley, and J.S. Grant Reid
Plant Physiol. 2004 March; 134(3): 1153–1162. doi: 10.1104/pp.103.029967.
PMCID: PMC389939
Isolation from Sugar Beet Cell Walls of Arabinan Oligosaccharides Esterified by Two Ferulic Acid Monomers
Sébastien V. Levigne, Marie-Christine J. Ralet, Bernard C. Quéméner, Brigitte N.-L. Pollet, Catherine Lapierre, and Jean-François J. Thibault
Plant Physiol. 2004 March; 134(3): 1173–1180. doi: 10.1104/pp.103.035311.
PMCID: PMC389941
myo-Inositol Oxygenase Offers a Possible Entry Point into Plant Ascorbate Biosynthesis
Argelia Lorence, Boris I. Chevone, Pedro Mendes, and Craig L. Nessler
Plant Physiol. 2004 March; 134(3): 1200–1205. doi: 10.1104/pp.103.033936.
PMCID: PMC389944
Plastid Lysophosphatidyl Acyltransferase Is Essential for Embryo Development in Arabidopsis
Hyun Uk Kim and Anthony H.C. Huang
Plant Physiol. 2004 March; 134(3): 1206–1216. doi: 10.1104/pp.103.035832.
PMCID: PMC389945
Cell Biology and Signal Transduction
Production of Reactive Oxygen Species, Alteration of Cytosolic Ascorbate Peroxidase, and Impairment of Mitochondrial Metabolism Are Early Events in Heat Shock-Induced Programmed Cell Death in Tobacco Bright-Yellow 2 Cells
Rosa Anna Vacca, Maria Concetta de Pinto, Daniela Valenti, Salvatore Passarella, Ersilia Marra, and Laura De Gara
Plant Physiol. 2004 March; 134(3): 1100–1112. doi: 10.1104/pp.103.035956.
PMCID: PMC389934
Geminating Pollen Has Tubular Vacuoles, Displays Highly Dynamic Vacuole Biogenesis, and Requires VACUOLESS1 for Proper Function
Glenn R. Hicks, Enrique Rojo, Seho Hong, David G. Carter, and Natasha V. Raikhel
Plant Physiol. 2004 March; 134(3): 1227–1239. doi: 10.1104/pp.103.037382.
PMCID: PMC389947
Development and Hormone Action
PICKLE Acts throughout the Plant to Repress Expression of Embryonic Traits and May Play a Role in Gibberellin-Dependent Responses
Jim T. Henderson, Hui-Chun Li, Stanley Dean Rider, Andreas P. Mordhorst, Jeanne Romero-Severson, Jin-Chen Cheng, Jennifer Robey, Z. Renee Sung, Sacco C. de Vries, and Joe Ogas
Plant Physiol. 2004 March; 134(3): 995–1005. doi: 10.1104/pp.103.030148.
PMCID: PMC389922
Gibberellins Repress Photomorphogenesis in Darkness
David Alabadí, Joan Gil, Miguel A. Blázquez, and José L. García-Martínez
Plant Physiol. 2004 March; 134(3): 1050–1057. doi: 10.1104/pp.103.035451.
PMCID: PMC389929
Alkamides Isolated from Plants Promote Growth and Alter Root Development in Arabidopsis
Enrique Ramírez-Chávez, José López-Bucio, Luis Herrera-Estrella, and Jorge Molina-Torres
Plant Physiol. 2004 March; 134(3): 1058–1068. doi: 10.1104/pp.103.034553.
PMCID: PMC389930
The MADS Box Transcription Factor ZmMADS2 Is Required for Anther and Pollen Maturation in Maize and Accumulates in Apoptotic Bodies during Anther Dehiscence
Daniela N. Schreiber, Jörg Bantin, and Thomas Dresselhaus
Plant Physiol. 2004 March; 134(3): 1069–1079. doi: 10.1104/pp.103.030577.
PMCID: PMC389931
A Novel Endo-β-Mannanase Gene in Tomato LeMAN5 Is Associated with Anther and Pollen Development
Sergei A. Filichkin, Jeffrey M. Leonard, Alvaro Monteros, Po-Pu Liu, and Hiroyuki Nonogaki
Plant Physiol. 2004 March; 134(3): 1080–1087. doi: 10.1104/pp.103.035998.
PMCID: PMC389932
The Pea Gene LH Encodes ent-Kaurene Oxidase
Sandra E. Davidson, Jennifer J. Smith, Chris A. Helliwell, Andrew T. Poole, and James B. Reid
Plant Physiol. 2004 March; 134(3): 1123–1134. doi: 10.1104/pp.103.032706.
PMCID: PMC389936
Long-Term Inhibition by Auxin of Leaf Blade Expansion in Bean and Arabidopsis
Christopher P. Keller, Rainer Stahlberg, Lana S. Barkawi, and Jerry D. Cohen
Plant Physiol. 2004 March; 134(3): 1217–1226. doi: 10.1104/pp.103.032300.
PMCID: PMC389946
Environmental Stress and Adaptation
The Arabidopsis Cytosolic Thioredoxin h5 Gene Induction by Oxidative Stress and Its W-Box-Mediated Response to Pathogen Elicitor
Christophe Laloi, Dominique Mestres-Ortega, Yves Marco, Yves Meyer, and Jean-Philippe Reichheld
Plant Physiol. 2004 March; 134(3): 1006–1016. doi: 10.1104/pp.103.035782.
PMCID: PMC389923
The Nature of Arsenic-Phytochelatin Complexes in Holcus lanatus and Pteris cretica
Andrea Raab, Jörg Feldmann, and Andrew A. Meharg
Plant Physiol. 2004 March; 134(3): 1113–1122. doi: 10.1104/pp.103.033506.
PMCID: PMC389935
Expression of KT/KUP Genes in Arabidopsis and the Role of Root Hairs in K+ Uptake
Sung Ju Ahn, Ryoung Shin, and Daniel P. Schachtman
Plant Physiol. 2004 March; 134(3): 1135–1145. doi: 10.1104/pp.103.034660.
PMCID: PMC389937
Ascorbate-Deficient Mutants of Arabidopsis Grow in High Light Despite Chronic Photooxidative Stress
Patricia Müller-Moulé, Talila Golan, and Krishna K. Niyogi
Plant Physiol. 2004 March; 134(3): 1163–1172. doi: 10.1104/pp.103.032375.
PMCID: PMC389940
Genetics, Genomics, and Molecular Evolution
A Surprising Diversity and Abundance of Xyloglucan Endotransglucosylase/Hydrolases in Rice. Classification and Expression Analysis
Ryusuke Yokoyama, Jocelyn K.C. Rose, and Kazuhiko Nishitani
Plant Physiol. 2004 March; 134(3): 1088–1099. doi: 10.1104/pp.103.035261.
PMCID: PMC389933
A Distinct Endogenous Pararetrovirus Family in Nicotiana tomentosiformis, a Diploid Progenitor of Polyploid Tobacco
Wolfgang Gregor, M. Florian Mette, Christina Staginnus, Marjori A. Matzke, and Antonius J.M. Matzke
Plant Physiol. 2004 March; 134(3): 1191–1199. doi: 10.1104/pp.103.031112.
PMCID: PMC389943
Plants Interacting with Other Organisms
A Nodule-Specific Dicarboxylate Transporter from Alder Is a Member of the Peptide Transporter Family
Jeeyon Jeong, SuJeong Suh, Changhui Guan, Yi-Fang Tsay, Nava Moran, Chang Jae Oh, Chung Sun An, Kirill N. Demchenko, Katharina Pawlowski, and Youngsook Lee
Plant Physiol. 2004 March; 134(3): 969–978. doi: 10.1104/pp.103.032102.
PMCID: PMC389920
Bacterial Volatiles Induce Systemic Resistance in Arabidopsis
Choong-Min Ryu, Mohamed A. Farag, Chia-Hui Hu, Munagala S. Reddy, Joseph W. Kloepper, and Paul W. Paré
Plant Physiol. 2004 March; 134(3): 1017–1026. doi: 10.1104/pp.103.026583.
PMCID: PMC389924
Manipulation of Endogenous Trypsin Proteinase Inhibitor Production in Nicotiana attenuata Demonstrates Their Function as Antiherbivore Defenses
Jorge A. Zavala, Aparna G. Patankar, Klaus Gase, Dequan Hui, and Ian T. Baldwin
Plant Physiol. 2004 March; 134(3): 1181–1190. doi: 10.1104/pp.103.035634.
PMCID: PMC389942
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