| | This journal provides immediate access to some articles. Review Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations Buyong Ma, Maxim Shatsky, Haim J. Wolfson, and Ruth Nussinov PMCID: PMC2373439 Articles The EF-hand domain: A globally cooperative structural unit Melanie R. Nelson, Eva Thulin, Patricia A. Fagan, Sture Forsén, and Walter J. Chazin PMCID: PMC2373453 Mutational analysis of the interaction between albumin-binding domain from streptococcal protein G and human serum albumin Martin Linhult, Hans Kaspar Binz, Mathias Uhlén, and Sophia Hober PMCID: PMC2373446 An inducible helix–Gly–Gly–helix motif in the N-terminal domain of histone H1e: A CD and NMR study Roger Vila, Imma Ponte, M. Angeles Jiménez, Manuel Rico, and Pedro Suau PMCID: PMC2373450 Rapid structural fluctuations of the free HIV protease flaps in solution: Relationship to crystal structures and comparison with predictions of dynamics calculations Darón I. Freedberg, Rieko Ishima, Jaison Jacob, Yun-Xing Wang, Irina Kustanovich, John M. Louis, and Dennis A. Torchia PMCID: PMC2373438 The CATH extended protein-family database: Providing structural annotations for genome sequences Frances M.G. Pearl, David Lee, James E. Bray, Daniel W.A. Buchan, Adrian J. Shepherd, and Christine A. Orengo PMCID: PMC2373435 The structure of spider toxin huwentoxin-II with unique disulfide linkage: Evidence for structural evolution Qin Shu, Shan-Yun Lu, Xiao-Cheng Gu, and Song-Ping Liang PMCID: PMC2373433 Crystal structure of oxidized flavodoxin, an essential protein in Helicobacter pylori Jörg Freigang, Kay Diederichs, Klaus P. Schäfer, Wolfram Welte, and Ralf Paul PMCID: PMC2373437 Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)10]3 Rita Berisio, Luigi Vitagliano, Lelio Mazzarella, and Adriana Zagari PMCID: PMC2373432 Binding of cations in Bacillus subtilis phosphoribosyldiphosphate synthetase and their role in catalysis Tine A. Eriksen, Anders Kadziola, and Sine Larsen PMCID: PMC2373447 Soft protein–protein docking in internal coordinates Juan Fernández-Recio, Maxim Totrov, and Ruben Abagyan PMCID: PMC2373434 The active site of hydroxynitrile lyase from Prunus amygdalus: Modeling studies provide new insights into the mechanism of cyanogenesis Ingrid Dreveny, Christoph Kratky, and Karl Gruber PMCID: PMC2373431 Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures William C. Wimley PMCID: PMC2373429 Rapid screening for improved solubility of small human proteins produced as fusion proteins in Escherichia coli Martin Hammarström, Niklas Hellgren, Susanne van den Berg, Helena Berglund, and Torleif Härd PMCID: PMC2373440 Side-chain modeling with an optimized scoring function Shide Liang and Nick V. Grishin PMCID: PMC2373451 Structural studies of the pigeon cytosolic NADP+-dependent malic enzyme Zhiru Yang, Hailong Zhang, Hui-Chi Hung, Chen-Chin Kuo, Li-Chu Tsai, Hanna S. Yuan, Wei-Yuan Chou, Gu-Gang Chang, and Liang Tong PMCID: PMC2373443 Low levels of asparagine deamidation can have a dramatic effect on aggregation of amyloidogenic peptides: Implications for the study of amyloid formation Melanie R. Nilsson, Miles Driscoll, and Daniel P. Raleigh PMCID: PMC2373442 Persistently conserved positions in structurally similar, sequence dissimilar proteins: Roles in preserving protein fold and function Iddo Friedberg and Hanah Margalit PMCID: PMC2373454 A comparison of position-specific score matrices based on sequence and structure alignments Anna R. Panchenko and Stephen H. Bryant PMCID: PMC2373449 Structures of the two 3D domain-swapped RNase A trimers Yanshun Liu, Giovanni Gotte, Massimo Libonati, and David Eisenberg PMCID: PMC2373430 Contributions of folding cores to the thermostabilities of two ribonucleases H Srebrenka Robic, James M. Berger, and Susan Marqusee PMCID: PMC2373436 Solution structure of a K+-channel blocker from the scorpion Tityus cambridgei Iren Wang, Shih-Hsiung Wu, Hsueh-Kai Chang, Ru-Chi Shieh, Hui-Ming Yu, and Chinpan Chen PMCID: PMC2373445 Crystal structure of the Yersinia pestis GTPase activator YopE Artem G. Evdokimov, Joseph E. Tropea, Karen M. Routzahn, and David S. Waugh PMCID: PMC2373448 Recursive domains in proteins Teresa Przytycka, Rajgopal Srinivasan, and George D. Rose PMCID: PMC2373444 Lack of synergy for inhibitors targeting a multi-drug-resistant HIV-1 protease Nancy M. King, Laurence Melnick, Moses Prabu-Jeyabalan, Ellen A. Nalivaika, Shiow-Shong Yang, Yun Gao, Xiaoyi Nie, Charles Zepp, Donald L. Heefner, and Celia A. Schiffer PMCID: PMC2373441 Statistical potentials for fold assessment Francisco Melo, Roberto Sánchez, and Andrej Sali PMCID: PMC2373452 |
