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Volume 12(5);  May 2003
Articles
Energy-dependent degradation: Linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing
Randall E. Burton, Tania A. Baker, and Robert T. Sauer
Protein Sci. 2003 May; 12(5): 893–902.
PMCID: PMC2323860
Roles of conformational stability and colloidal stability in the aggregation of recombinant human granulocyte colony-stimulating factor
Eva Y. Chi, Sampathkumar Krishnan, Brent S. Kendrick, Byeong S. Chang, John F. Carpenter, and Theodore W. Randolph
Protein Sci. 2003 May; 12(5): 903–913.
PMCID: PMC2323861
Comparison of 13CαH and 15NH backbone dynamics in protein GB1
Djaudat Idiyatullin, Irina Nesmelova, Vladimir A. Daragan, and Kevin H. Mayo
Protein Sci. 2003 May; 12(5): 914–922.
PMCID: PMC2323862
A neural-network based method for prediction of γ-turns in proteins from multiple sequence alignment
Harpreet Kaur and G.P.S. Raghava
Protein Sci. 2003 May; 12(5): 923–929.
PMCID: PMC2323863
Conformational states of the switch I region of Ha-ras-p21 in hinge residue mutants studied by fluorescence lifetime and fluorescence anisotropy measurements
Steven Kuppens, Mario Hellings, Jan Jordens, Stefan Verheyden, and Yves Engelborghs
Protein Sci. 2003 May; 12(5): 930–938.
PMCID: PMC2323864
Mutations in domain a′ of protein disulfide isomerase affect the folding pathway of bovine pancreatic ribonuclease A
Margherita Ruoppolo, Stefania Orrù, Fabio Talamo, Johanna Ljung, Annamari Pirneskoski, Kari I. Kivirikko, Gennaro Marino, and Peppi Koivunen
Protein Sci. 2003 May; 12(5): 939–952.
PMCID: PMC2323865
Role of histidine interruption in mitigating the pathological effects of long polyglutamine stretches in SCA1: A molecular approach
Somdutta Sen, Debasis Dash, Santosh Pasha, and Samir K. Brahmachari
Protein Sci. 2003 May; 12(5): 953–962.
PMCID: PMC2323866
Cyclic coordinate descent: A robotics algorithm for protein loop closure
Adrian A. Canutescu and Roland L. Dunbrack, Jr.
Protein Sci. 2003 May; 12(5): 963–972.
PMCID: PMC2323867
Backbone 15N relaxation analysis of the N-terminal domain of the HTLV-I capsid protein and comparison with the capsid protein of HIV-1
Claudia C. Cornilescu, Fadila Bouamr, Carol Carter, and Nico Tjandra
Protein Sci. 2003 May; 12(5): 973–981.
PMCID: PMC2323868
Ligand-induced changes in dynamics in the RT loop of the C-terminal SH3 domain of Sem-5 indicate cooperative conformational coupling
Josephine C. Ferreon and Vincent J. Hilser
Protein Sci. 2003 May; 12(5): 982–996.
PMCID: PMC2323869
Arresting and releasing Staphylococcal α-hemolysin at intermediate stages of pore formation by engineered disulfide bonds
Toshimitsu Kawate and Eric Gouaux
Protein Sci. 2003 May; 12(5): 997–1006.
PMCID: PMC2323870
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Kasper Lamberth, Søren Buus, Søren Brunak, and Ole Lund
Protein Sci. 2003 May; 12(5): 1007–1017.
PMCID: PMC2323871
Contribution of the dimeric state to the thermal stability of the flavoprotein D-amino acid oxidase
Loredano Pollegioni, Stefania Iametti, Dimitrios Fessas, Laura Caldinelli, Luciano Piubelli, Alberto Barbiroli, Mirella S. Pilone, and Francesco Bonomi
Protein Sci. 2003 May; 12(5): 1018–1029.
PMCID: PMC2323872
pH Dependence of structural stability of interleukin-2 and granulocyte colony-stimulating factor
Margaret Speed Ricci, Casim A. Sarkar, Eric M. Fallon, Douglas A. Lauffenburger, and David N. Brems
Protein Sci. 2003 May; 12(5): 1030–1038.
PMCID: PMC2323873
Involvement of conserved asparagine and arginine residues from the N-terminal region in the catalytic mechanism of rat liver and Trypanosoma cruzi tyrosine aminotransferases
Verónica R. Sobrado, Marisa Montemartini-Kalisz, Henryk M. Kalisz, María Candelaria de la Fuente, Hans-Jürgen Hecht, and Cristina Nowicki
Protein Sci. 2003 May; 12(5): 1039–1050.
PMCID: PMC2323874
The catalytic mechanism of galactose mutarotase
James B. Thoden, Jungwook Kim, Frank M. Raushel, and Hazel M. Holden
Protein Sci. 2003 May; 12(5): 1051–1059.
PMCID: PMC2323875
Improved amino acid flexibility parameters
David K. Smith, Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, and Guang Zhu
Protein Sci. 2003 May; 12(5): 1060–1072.
PMCID: PMC2323876
Can correct protein models be identified?
Björn Wallner and Arne Elofsson
Protein Sci. 2003 May; 12(5): 1073–1086.
PMCID: PMC2323877
Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles
Guangshun Wang, Paul A. Keifer, and Alan Peterkofsky
Protein Sci. 2003 May; 12(5): 1087–1096.
PMCID: PMC2323878
Crystal structures of a pantothenate synthetase from M. tuberculosis and its complexes with substrates and a reaction intermediate
Shuishu Wang and David Eisenberg
Protein Sci. 2003 May; 12(5): 1097–1108.
PMCID: PMC2323879
The crystal structure of augmenter of liver regeneration: A mammalian FAD-dependent sulfhydryl oxidase
Chia-Kuei Wu, Tamara A. Dailey, Harry A. Dailey, Bi-Cheng Wang, and John P. Rose
Protein Sci. 2003 May; 12(5): 1109–1118.
PMCID: PMC2323880
For the Record
Discovery of a significant, nontopological preference for antiparallel alignment of helices with parallel regions in sheets
Brandon M. Hespenheide and Leslie A. Kuhn
Protein Sci. 2003 May; 12(5): 1119–1125.
PMCID: PMC2323881
Stability of monomeric Cro variants: Isoenergetic transformation of a type I′ to a type II′ β-hairpin by single amino acid replacements
A.K.M.M. Mollah, Rhonda L. Stennis, and Michael C. Mossing
Protein Sci. 2003 May; 12(5): 1126–1130.
PMCID: PMC2323882
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases
Jimin Pei and Nick V. Grishin
Protein Sci. 2003 May; 12(5): 1131–1135.
PMCID: PMC2323883
A novel member of the split βαβ fold: Solution structure of the hypothetical protein YML108W from Saccharomyces cerevisiae
Antonio Pineda-Lucena, Jack C.C. Liao, John R. Cort, Adelinda Yee, Michael A. Kennedy, Aled. M. Edwards, and Cheryl H. Arrowsmith
Protein Sci. 2003 May; 12(5): 1136–1140.
PMCID: PMC2323884
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