| | This journal provides immediate access to some articles. Reviews Determination of enzyme mechanisms by molecular dynamics: Studies on quinoproteins, methanol dehydrogenase, and soluble glucose dehydrogenase Swarnalatha Y. Reddy and Thomas C. Bruice PMCID: PMC2279812 Caspase activation, inhibition, and reactivation: A mechanistic view Yigong Shi PMCID: PMC2279816 Accelerated Communication Orientation and helical conformation of a tissue-specific hunter-killer peptide in micelles Leigh A. Plesniak, Jonathan I. Parducho, Angie Ziebart, Bernhard H. Geierstanger, Jennifer A. Whiles, Guiseppe Melacini, and Patricia A. Jennings PMCID: PMC2279830 Articles Modeling and simulation of the human δ opioid receptor Mahalaxmi Aburi and Paul E. Smith PMCID: PMC2279837 Insights into the DNA repair process by the formamidopyrimidine-DNA glycosylase investigated by molecular dynamics Patricia Amara, Laurence Serre, Bertrand Castaing, and Aline Thomas PMCID: PMC2279820 NMR structure of CXCR3 binding chemokine CXCL11 (ITAC) Valerie Booth, Ian Clark-Lewis, and Brian D. Sykes PMCID: PMC2279818 Experimentally biased model structure of the Hsc70/auxilin complex: Substrate transfer and interdomain structural change James M. Gruschus, Lois E. Greene, Evan Eisenberg, and James A. Ferretti PMCID: PMC2279835 A classification of disulfide patterns and its relationship to protein structure and function Abhas Gupta, Herman W.T. Van Vlijmen, and Juswinder Singh PMCID: PMC2279833 Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2α Natarajan Kannan and Andrew F. Neuwald PMCID: PMC2279817 Biophysical characterization of ZSPA-1—A phage-display selected binder to protein A Christofer Lendel, Vildan Dincbas-Renqvist, Alexander Flores, Elisabet Wahlberg, Jakob Dogan, Per-Åke Nygren, and Torleif Härd PMCID: PMC2279809 Solution structure of the RWD domain of the mouse GCN2 protein Nobukazu Nameki, Misao Yoneyama, Seizo Koshiba, Naoya Tochio, Makoto Inoue, Eiko Seki, Takayoshi Matsuda, Yasuko Tomo, Takushi Harada, Kohei Saito, Naohiro Kobayashi, Takashi Yabuki, Masaaki Aoki, Emi Nunokawa, Natsuko Matsuda, Noriko Sakagami, Takaho Terada, Mikako Shirouzu, Mayumi Yoshida, Hiroshi Hirota, Takashi Osanai, Akiko Tanaka, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Kengo Kinoshita, Peter Güntert, Takanori Kigawa, and Shigeyuki Yokoyama PMCID: PMC2279815 Flexibility in the P2 domain of the HIV-1 Gag polyprotein John L. Newman, Eric W. Butcher, Dipti T. Patel, Yelena Mikhaylenko, and Michael F. Summers PMCID: PMC2279828 Biophysical and kinetic analysis of wild-type and site-directed mutants of the isolated and native dehydroquinate synthase domain of the AROM protein Alison Park, Heather K. Lamb, Charlie Nichols, Jonathan D. Moore, Katherine A. Brown, Alan Cooper, Ian G. Charles, David K. Stammers, and Alastair R. Hawkins PMCID: PMC2279823 H-bonding in protein hydration revisited Michael Petukhov, Georgy Rychkov, Leonid Firsov, and Luis Serrano PMCID: PMC2279814 Evolutionary trace analysis of the α-D-phosphohexomutase superfamily Grant S. Shackelford, Catherine A. Regni, and Lesa J. Beamer PMCID: PMC2279825 A mobile loop order–disorder transition modulates the speed of chaperonin cycling Frank Shewmaker, Michael J. Kerner, Manajit Hayer-Hartl, Gracjana Klein, Costa Georgopoulos, and Samuel J. Landry PMCID: PMC2279813 Detecting hidden sequence propensity for amyloid fibril formation Sukjoon Yoon and William J. Welsh PMCID: PMC2279810 The comparative study on the solution structures of the oxidized bovine microsomal cytochrome b5 and mutant V45H Qi Zhang, Chunyang Cao, Zhi-Qiang Wang, Yun-Hua Wang, Houming Wu, and Zhong-Xian Huang PMCID: PMC2279834 Proteome-wide functional classification and identification of prokaryotic transmembrane proteins by transmembrane topology similarity comparison Masafumi Arai, Kosuke Okumura, Masanobu Satake, and Toshio Shimizu PMCID: PMC2279829 The C-terminal domain of dimeric serine hydroxymethyltransferase plays a key role in stabilization of the quaternary structure and cooperative unfolding of protein: Domain swapping studies with enzymes having high sequence identity Anant Narayan Bhatt, M. Yahiya Khan, and Vinod Bhakuni PMCID: PMC2279811 Kinetic traps in the folding/unfolding of procaspase-1 CARD domain Yun-Ru Chen and A. Clay Clark PMCID: PMC2279836 Global analysis of three-state protein unfolding data Mark E. Harder, Max L. Deinzer, Mark E. Leid, and Michael I. Schimerlik PMCID: PMC2279808 Probing folding and fluorescence quenching in human γD crystallin Greek key domains using triple tryptophan mutant proteins Melissa S. Kosinski-Collins, Shannon L. Flaugh, and Jonathan King PMCID: PMC2279819 In vivo folding of recombinant metallo-β-lactamase L1 requires the presence of Zn(II) Gopalraj Periyannan, Patrick J. Shaw, Tara Sigdel, and Michael W. Crowder PMCID: PMC2279831 Cation–π interactions studied in a model coiled-coil peptide Morris M. Slutsky and E. Neil G. Marsh PMCID: PMC2279832 Protein Structure Report Solution NMR structure of the C-terminal domain of the human protein DEK Matthew Devany, N. Prasad Kotharu, and Hiroshi Matsuo PMCID: PMC2279821 For the Record Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease Hua Cheng, Nan Shen, Jimin Pei, and Nick V. Grishin PMCID: PMC2279824 Asymmetric amino acid compositions of transmembrane β-strands Aaron K. Chamberlain and James U. Bowie PMCID: PMC2279826 Book Review Handbook of proteomic methods, edited by P. Michael Conn.: 2003. Totowa, NJ: Humana Press. 524 pp. $135 (hardcover) Joel Vandekerckhove PMCID: PMC2279827 Correction Protein Sci. 2004 August; 13(8): 2276. PMCID: PMC2279822 Corrects: Jan K. Rainey, et al. A statistically derived parameterization for the collagen triple-helix. Protein Sci. 2002 November; 11(11): 2748–2754. |
