| | This journal provides immediate access to some articles. Review Amyloid accomplices and enforcers Andrei T. Alexandrescu PMCID: PMC2253318 Articles Automatic generation and evaluation of sparse protein signatures for families of protein structural domains Matthew J. Blades, Jon C. Ison, Ranjeeva Ranasinghe, and John B.C. Findlay PMCID: PMC2253312 pH effects on the stability and dimerization of procaspase-3 Kakoli Bose and A. Clay Clark PMCID: PMC2253328 Direct demonstration of carbamoyl phosphate formation on the C-terminal domain of carbamoyl phosphate synthetase Michael Kothe, Cristina Purcarea, Hedeel I. Guy, David R. Evans, and Susan G. Powers-Lee PMCID: PMC2253338 Modifications of human βA1/βA3-crystallins include S-methylation, glutathiolation, and truncation Veniamin N. Lapko, Ronald L. Cerny, David L. Smith, and Jean B. Smith PMCID: PMC2253330 The length of the reactive center loop modulates the latency transition of plasminogen activator inhibitor-1 Yu-Ran Na and Hana Im PMCID: PMC2253313 Orthogonal site-specific protein modification by engineering reversible thiol protection mechanisms J. Jefferson Smith, David W. Conrad, Matthew J. Cuneo, and Homme W. Hellinga PMCID: PMC2253321 Electric charge balance mechanism of extended soluble proteins Nobuyuki Uchikoga, Shun-Ya Takahashi, Runcong Ke, Masashi Sonoyama, and Shigeki Mitaku PMCID: PMC2253322 Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain David Wildes and Susan Marqusee PMCID: PMC2253332 A comparative study of the α-subdomains of bovine and human α-lactalbumin reveals key differences that correlate with molten globule stability Farhana A. Chowdhury and Daniel P. Raleigh PMCID: PMC2253331 Enzyme adaptation to alkaline pH: Atomic resolution (1.08 Å) structure of phosphoserine aminotransferase from Bacillus alcalophilus Anatoly P. Dubnovitsky, Evangelia G. Kapetaniou, and Anastassios C. Papageorgiou PMCID: PMC2253317 A novel method reveals that solvent water favors polyproline II over β-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA) Patrick J. Fleming, Nicholas C. Fitzkee, Mihaly Mezei, Rajgopal Srinivasan, and George D. Rose PMCID: PMC2253334 Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities Shingo Hanaoka, Aritaka Nagadoi, and Yoshifumi Nishimura PMCID: PMC2253311 A computational method for the analysis and prediction of protein:phosphopeptide-binding sites Brian A. Joughin, Bruce Tidor, and Michael B. Yaffe PMCID: PMC2253325 Ser95, Asn97, and Thr78 are important for the catalytic function of porcine NADP-dependent isocitrate dehydrogenase Tae-Kang Kim and Roberta F. Colman PMCID: PMC2253315 Cloning and expression of multiple integral membrane proteins from Mycobacterium tuberculosis in Escherichia coli Alla Korepanova, Fei P. Gao, Yuanzi Hua, Huajun Qin, Robert K. Nakamoto, and Timothy A. Cross PMCID: PMC2253320 Release of ADP from the catalytic subunit of protein kinase A: A molecular dynamics simulation study Benzhuo Lu, Chung F. Wong, and J. Andrew McCammon PMCID: PMC2253316 Structure of rhodocetin reveals noncovalently bound heterodimer interface Palasingam Paaventhan, Chunguang Kong, Jeremiah S. Joseph, Max C.M. Chung, and Prasanna R. Kolatkar PMCID: PMC2253329 The structures of the unique sulfotransferase retinol dehydratase with product and inhibitors provide insight into enzyme mechanism and inhibition Svetlana Pakhomova, Jochen Buck, and Marcia E. Newcomer PMCID: PMC2253324 Computational analysis of the transient movement of helices in sensory rhodopsin II Y. Sato, M. Hata, S. Neya, and T. Hoshino PMCID: PMC2253333 Identifying natural substrates for chaperonins using a sequence-based approach George Stan, Bernard R. Brooks, George H. Lorimer, and D. Thirumalai PMCID: PMC2253340 Crystal structure of the histidine-containing phosphotransfer protein ZmHP2 from maize Hajime Sugawara, Yoshiaki Kawano, Tomomitsu Hatakeyama, Tomoyuki Yamaya, Nobuo Kamiya, and Hitoshi Sakakibara PMCID: PMC2253335 Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold Cong-Zhao Zhou, Philippe Meyer, Sophie Quevillon-Cheruel, Inès Li De La Sierra-Gallay, Bruno Collinet, Marc Graille, Karine Blondeau, Jean-Marie François, Nicolas Leulliot, Isabelle Sorel, Anne Poupon, Joel Janin, and Herman Van Tilbeurgh PMCID: PMC2253319 Protein Structure Reports A novel member of the YchN-like fold: Solution structure of the hypothetical protein Tm0979 from Thermotoga maritima Joe A. Gaspar, Chengsong Liu, Kenrick A. Vassall, Gabriela Meglei, Ricardo Stephen, Peter B. Stathopulos, Antonio Pineda-Lucena, Bin Wu, Adelinda Yee, Cheryl H. Arrowsmith, and Elizabeth M. Meiering PMCID: PMC2253327 Solution structure of the rhodanese homology domain At4g01050(175–295) from Arabidopsis thaliana David Pantoja-Uceda, Blanca López-Méndez, Seizo Koshiba, Makoto Inoue, Takanori Kigawa, Takaho Terada, Mikako Shirouzu, Akiko Tanaka, Motoaki Seki, Kazuo Shinozaki, Shigeyuki Yokoyama, and Peter Güntert PMCID: PMC2253326 For the Record Contribution of the intrinsic disulfide to the assembly mechanism of islet amyloid Bon W. Koo and Andrew D. Miranker PMCID: PMC2253339 LiveBench-8: The large-scale, continuous assessment of automated protein structure prediction Leszek Rychlewski and Daniel Fischer PMCID: PMC2253323 Benchmarking B cell epitope prediction: Underperformance of existing methods Martin J. Blythe and Darren R. Flower PMCID: PMC2253337 Thermodynamic consequences of disrupting a water-mediated hydrogen bond network in a protein:pheromone complex Scott D. Sharrow, Katherine A. Edmonds, Michael A. Goodman, Milos V. Novotny, and Martin J. Stone PMCID: PMC2253314 Award Address A voyage to the inner space of cells Wolfgang Baumeister PMCID: PMC2253336 |
