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Volume 16(10);  October 2007
Articles
Solution structure and proposed domain–domain recognition interface of an acyl carrier protein domain from a modular polyketide synthase
Viktor Y. Alekseyev, Corey W. Liu, David E. Cane, Joseph D. Puglisi, and Chaitan Khosla
Protein Sci. 2007 October; 16(10): 2093–2107. doi: 10.1110/ps.073011407.
PMCID: PMC2204127
Pre-structured motifs in the natively unstructured preS1 surface antigen of hepatitis B virus
Seung-Wook Chi, Do-Hyoung Kim, Si-Hyung Lee, Iksoo Chang, and Kyou-Hoon Han
Protein Sci. 2007 October; 16(10): 2108–2117. doi: 10.1110/ps.072983507.
PMCID: PMC2204132
The rigid connecting loop stabilizes hairpin folding of the two helices of the ATP synthase subunit c
Oleg Y. Dmitriev and Robert H. Fillingame
Protein Sci. 2007 October; 16(10): 2118–2122. doi: 10.1110/ps.072776307.
PMCID: PMC2204134
Reduced Cβ statistical potentials can outperform all-atom potentials in decoy identification
James E. Fitzgerald, Abhishek K. Jha, Andres Colubri, Tobin R. Sosnick, and Karl F. Freed
Protein Sci. 2007 October; 16(10): 2123–2139. doi: 10.1110/ps.072939707.
PMCID: PMC2204143
Optimization of linear disorder predictors yields tight association between crystallographic disorder and hydrophobicity
Nathan B. Holladay, Lisa N. Kinch, and Nick V. Grishin
Protein Sci. 2007 October; 16(10): 2140–2152. doi: 10.1110/ps.072980107.
PMCID: PMC2204125
Structural biology of transmembrane domains: Efficient production and characterization of transmembrane peptides by NMR
Jian Hu, Huajun Qin, Conggang Li, Mukesh Sharma, Timothy A. Cross, and Fei Philip Gao
Protein Sci. 2007 October; 16(10): 2153–2165. doi: 10.1110/ps.072996707.
PMCID: PMC2204124
The dominant-negative effect of the Q218K variant of the prion protein does not require protein X
Cheng I. Lee, Qingyuan Yang, Veronique Perrier, and Ilia V. Baskakov
Protein Sci. 2007 October; 16(10): 2166–2173. doi: 10.1110/ps.072954607.
PMCID: PMC2204135
The crystal structure of the ligand-binding module of human TAG-1 suggests a new mode of homophilic interaction
Mario Mörtl, Peter Sonderegger, Kay Diederichs, and Wolfram Welte
Protein Sci. 2007 October; 16(10): 2174–2183. doi: 10.1110/ps.072802707.
PMCID: PMC2204121
Crystal Structure of human pyridoxal kinase: Structural basis of M+ and M2+ activation
Faik N. Musayev, Martino L. di Salvo, Tzu-Ping Ko, Amit K. Gandhi, Ashwini Goswami, Verne Schirch, and Martin K. Safo
Protein Sci. 2007 October; 16(10): 2184–2194. doi: 10.1110/ps.073022107.
PMCID: PMC2204131
Interactions between homopolymeric amino acids (HPAAs)
Yoko Oma, Yoshihiro Kino, Kazuya Toriumi, Noboru Sasagawa, and Shoichi Ishiura
Protein Sci. 2007 October; 16(10): 2195–2204. doi: 10.1110/ps.072955307.
PMCID: PMC2204140
Conformational changes induced by a single amino acid substitution in the trans-membrane domain of Vpu: Implications for HIV-1 susceptibility to channel blocking drugs
Sang Ho Park and Stanley J. Opella
Protein Sci. 2007 October; 16(10): 2205–2215. doi: 10.1110/ps.073041107.
PMCID: PMC2204142
Models of S/π interactions in protein structures: Comparison of the H2S–benzene complex with PDB data
Ashley L. Ringer, Anastasia Senenko, and C. David Sherrill
Protein Sci. 2007 October; 16(10): 2216–2223. doi: 10.1110/ps.073002307.
PMCID: PMC2204139
Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids
Mark Sales, Joseph J. Plecs, James M. Holton, and Tom Alber
Protein Sci. 2007 October; 16(10): 2224–2232. doi: 10.1110/ps.062702907.
PMCID: PMC2204136
The role of the turn in β-hairpin formation during WW domain folding
Tim Sharpe, Amanda L. Jonsson, Trevor J. Rutherford, Valerie Daggett, and Alan R. Fersht
Protein Sci. 2007 October; 16(10): 2233–2239. doi: 10.1110/ps.073004907.
PMCID: PMC2204123
Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein
Yaji Tian, Matthew J. Cuneo, Anita Changela, Birte Höcker, Lorena S. Beese, and Homme W. Hellinga
Protein Sci. 2007 October; 16(10): 2240–2250. doi: 10.1110/ps.072969407.
PMCID: PMC2204141
Forbidden penta-peptides
Tamir Tuller, Benny Chor, and Nathan Nelson
Protein Sci. 2007 October; 16(10): 2251–2259. doi: 10.1110/ps.073067607.
PMCID: PMC2204130
The Bacillus licheniformis BlaP β-lactamase as a model protein scaffold to study the insertion of protein fragments
Marylène Vandevenne, Patrice Filee, Natacha Scarafone, Benoît Cloes, Gilles Gaspard, Nursel Yilmaz, Mireille Dumoulin, Jean-Marie François, Jean-Marie Frère, and Moreno Galleni
Protein Sci. 2007 October; 16(10): 2260–2271. doi: 10.1110/ps.072912407.
PMCID: PMC2204133
Protein Structure Reports
Crystal structure of activin receptor type IIB kinase domain from human at 2.0 Å resolution
Seungil Han, Pat Loulakis, Matt Griffor, and Zhi Xie
Protein Sci. 2007 October; 16(10): 2272–2277. doi: 10.1110/ps.073068407.
PMCID: PMC2204126
Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two-layer sandwich architecture
Esther León, Adelinda Yee, Angel R. Ortíz, Jorge Santoro, Manuel Rico, and M. Angeles Jiménez
Protein Sci. 2007 October; 16(10): 2278–2286. doi: 10.1110/ps.072869607.
PMCID: PMC2204122
Unusual Cu(I)/Ag(I) coordination of Escherichia coli CusF as revealed by atomic resolution crystallography and X-ray absorption spectroscopy
Isabell R. Loftin, Sylvia Franke, Ninian J. Blackburn, and Megan M. McEvoy
Protein Sci. 2007 October; 16(10): 2287–2293. doi: 10.1110/ps.073021307.
PMCID: PMC2204137
Structure of the Murray Valley encephalitis virus RNA helicase at 1.9 Å resolution
Erika J. Mancini, Rene Assenberg, Anil Verma, Thomas S. Walter, Roman Tuma, Jonathan M. Grimes, Raymond J. Owens, and David I. Stuart
Protein Sci. 2007 October; 16(10): 2294–2300. doi: 10.1110/ps.072843107.
PMCID: PMC2204129
For the Record
WrbA bridges bacterial flavodoxins and eukaryotic NAD(P)H:quinone oxidoreductases
Jannette Carey, Jiri Brynda, Julie Wolfová, Rita Grandori, Tobias Gustavsson, Rüdiger Ettrich, and Ivana Kutá Smatanová
Protein Sci. 2007 October; 16(10): 2301–2305. doi: 10.1110/ps.073018907.
PMCID: PMC2204128
A cross-strand Trp–Trp pair stabilizes the hPin1 WW domain at the expense of function
Marcus Jäger, Maria Dendle, Amelia A. Fuller, and Jeffery W. Kelly
Protein Sci. 2007 October; 16(10): 2306–2313. doi: 10.1110/ps.072904107.
PMCID: PMC2204138
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