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Volume 99(21);  October 15, 2002
Commentaries
Do SNARE proteins confer specificity for vesicle fusion?
Mingshan Xue and Bing Zhang
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13359–13361. Published online 2002 October 8. doi: 10.1073/pnas.232565999.
PMCID: PMC129673
Chemotherapeutic hope on the horizon for Plasmodium vivax malaria?
Robert G. Ridley
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13362–13364. Published online 2002 October 8. doi: 10.1073/pnas.232483699.
PMCID: PMC129674
The discovery of susceptibility genes for mental disorders
C. Robert Cloninger
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13365–13367. Published online 2002 October 8. doi: 10.1073/pnas.222532599.
PMCID: PMC129675
Mechanism for saltational shifts in pheromone communication systems
Thomas C. Baker
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13368–13370. Published online 2002 October 8. doi: 10.1073/pnas.222539799.
PMCID: PMC129676
Cyclooxygenase-3 (COX-3): Filling in the gaps toward a COX continuum?
Timothy D. Warner and Jane A. Mitchell
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13371–13373. Published online 2002 October 8. doi: 10.1073/pnas.222543099.
PMCID: PMC129677
Error catastrophe and antiviral strategy
Manfred Eigen
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13374–13376. Published online 2002 October 7. doi: 10.1073/pnas.212514799.
PMCID: PMC129678
Interruption of antiretroviral therapy to augment immune control of chronic HIV-1 infection: Risk without reward
Ume L. Abbas and John W. Mellors
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13377–13378. Published online 2002 October 7. doi: 10.1073/pnas.212518999.
PMCID: PMC129679
Climate, changing phenology, and other life history traits: Nonlinearity and match–mismatch to the environment
Nils Chr. Stenseth and Atle Mysterud
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13379–13381. Published online 2002 October 7. doi: 10.1073/pnas.212519399.
PMCID: PMC129680
Physical Sciences
Applied Physical Sciences
Modeling the Internet's large-scale topology
Soon-Hyung Yook, Hawoong Jeong, and Albert-László Barabási
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13382–13386. Published online 2002 October 4. doi: 10.1073/pnas.172501399.
PMCID: PMC129681
Chemistry
Structures and stabilities of higher coordinate onium-boronium dications (X+BH3+ and X+BH5+; X = NH3, PH3, H2O, and H2S)
Golam Rasul, G. K. Surya Prakash, and George A. Olah
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13387–13390. Published online 2002 October 7. doi: 10.1073/pnas.202476399.
PMCID: PMC129682
Critical points in charged membranes containing cholesterol
Arun Radhakrishnan and Harden M. McConnell
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13391–13396. Published online 2002 October 4. doi: 10.1073/pnas.212522699.
PMCID: PMC129683
Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering
William A. Barton, John B. Biggins, Jiqing Jiang, Jon S. Thorson, and Dimitar B. Nikolov
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13397–13402. Published online 2002 October 8. doi: 10.1073/pnas.192468299.
PMCID: PMC129684
Physics
Increased noise as an effect of haploinsufficiency of the tumor-suppressor gene neurofibromatosis type 1 in vitro
Ralf Kemkemer, Stephanie Schrank, Walther Vogel, Hans Gruler, and Dieter Kaufmann
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13783–13788. Published online 2002 October 4. doi: 10.1073/pnas.212386999.
PMCID: PMC129775
Biological Sciences
Biochemistry
An activation domain in the C-terminal subunit of HCF-1 is important for transactivation by VP16 and LZIP
Randy L. Luciano and Angus C. Wilson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13403–13408. Published online 2002 September 23. doi: 10.1073/pnas.202200399.
PMCID: PMC129685
Structure and function in rhodopsin: Asymmetric reconstitution of rhodopsin in liposomes
Li Niu, Jong-Myoung Kim, and H. Gobind Khorana
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13409–13412. Published online 2002 October 7. doi: 10.1073/pnas.212518899.
PMCID: PMC129686
Structure and function in rhodopsin: A tetracycline-inducible system in stable mammalian cell lines for high-level expression of opsin mutants
Philip J. Reeves, Jong-Myoung Kim, and H. Gobind Khorana
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13413–13418. Published online 2002 October 7. doi: 10.1073/pnas.212519199.
PMCID: PMC129687
Structure and function in rhodopsin: High-level expression of rhodopsin with restricted and homogeneous N-glycosylation by a tetracycline-inducible N-acetylglucosaminyltransferase I-negative HEK293S stable mammalian cell line
Philip J. Reeves, Nico Callewaert, Roland Contreras, and H. Gobind Khorana
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13419–13424. Published online 2002 October 7. doi: 10.1073/pnas.212519299.
PMCID: PMC129688
Histone deacetylase 6 binds polyubiquitin through its zinc finger (PAZ domain) and copurifies with deubiquitinating enzymes
Sara S. Hook, Amir Orian, Shaun M. Cowley, and Robert N. Eisenman
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13425–13430. Published online 2002 September 27. doi: 10.1073/pnas.172511699.
PMCID: PMC129689
The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast
Roy M. Williams, Michael Primig, Brian K. Washburn, Elizabeth A. Winzeler, Michel Bellis, Cyril Sarrauste de Menthière, Ronald W. Davis, and Rochelle E. Esposito
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13431–13436. Published online 2002 October 7. doi: 10.1073/pnas.202495299.
PMCID: PMC129690
X-ray structure of a bifunctional protein kinase in complex with its protein substrate HPr
Sonia Fieulaine, Solange Morera, Sandrine Poncet, Ivan Mijakovic, Anne Galinier, Joël Janin, Josef Deutscher, and Sylvie Nessler
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13437–13441. Published online 2002 October 1. doi: 10.1073/pnas.192368699.
PMCID: PMC129691
Pyrophosphate-producing protein dephosphorylation by HPr kinase/phosphorylase: A relic of early life?
Ivan Mijakovic, Sandrine Poncet, Anne Galinier, Vicente Monedero, Sonia Fieulaine, Joël Janin, Sylvie Nessler, José Antonio Marquez, Klaus Scheffzek, Sonja Hasenbein, Wolfgang Hengstenberg, and Josef Deutscher
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13442–13447. Published online 2002 October 1. doi: 10.1073/pnas.212410399.
PMCID: PMC129692
Subunit rotation of ATP synthase embedded in membranes: a or β subunit rotation relative to the c subunit ring
Kazuaki Nishio, Atsuko Iwamoto-Kihara, Akitsugu Yamamoto, Yoh Wada, and Masamitsu Futai
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13448–13452. Published online 2002 September 30. doi: 10.1073/pnas.202149599.
PMCID: PMC129693
Trypanosoma cruzi expresses a plant-like ascorbate-dependent hemoperoxidase localized to the endoplasmic reticulum
Shane R. Wilkinson, Samson O. Obado, Isabel L. Mauricio, and John M. Kelly
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13453–13458. Published online 2002 September 26. doi: 10.1073/pnas.202422899.
PMCID: PMC129694
Biochemical purification and pharmacological inhibition of a mammalian prolyl hydroxylase acting on hypoxia-inducible factor
Mircea Ivan, Thomas Haberberger, David C. Gervasi, Kristen S. Michelson, Volkmar Günzler, Keiichi Kondo, Haifeng Yang, Irina Sorokina, Ronald C. Conaway, Joan W. Conaway, and William G. Kaelin, Jr.
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13459–13464. Published online 2002 September 26. doi: 10.1073/pnas.192342099.
PMCID: PMC129695
Protonation of non-Watson–Crick base pairs and encapsidation of turnip yellow mosaic virus RNA
Hugo H. J. Bink, Koen Hellendoorn, Jannes van der Meulen, and Cornelis W. A. Pleij
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13465–13470. Published online 2002 October 2. doi: 10.1073/pnas.202287499.
PMCID: PMC129696
Adaptation to famine: A family of stationary-phase genes revealed by microarray analysis
Travis H. Tani, Arkady Khodursky, Robert M. Blumenthal, Patrick O. Brown, and Rowena G. Matthews
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13471–13476. Published online 2002 October 8. doi: 10.1073/pnas.212510999.
PMCID: PMC129697
Structural analysis of the RSC chromatin-remodeling complex
Francisco J. Asturias, Wen-Hsiang Chung, Roger D. Kornberg, and Yahli Lorch
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13477–13480. Published online 2002 October 4. doi: 10.1073/pnas.162504299.
PMCID: PMC129698
Interaction of dihydrofolate reductase with methotrexate: Ensemble and single-molecule kinetics
P. T. Ravi Rajagopalan, Zhiquan Zhang, Lynn McCourt, Mary Dwyer, Stephen J. Benkovic, and Gordon G. Hammes
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13481–13486. Published online 2002 October 1. doi: 10.1073/pnas.172501499.
PMCID: PMC129699
A potent analog of 1α,25-dihydroxyvitamin D3 selectively induces bone formation
Nirupama K. Shevde, Lori A. Plum, Margaret Clagett-Dame, Hironori Yamamoto, J. Wesley Pike, and Hector F. DeLuca
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13487–13491. Published online 2002 October 8. doi: 10.1073/pnas.202471299.
PMCID: PMC129700
Structure of the single-strand annealing domain of human RAD52 protein
Martin R. Singleton, Lois M. Wentzell, Yilun Liu, Stephen C. West, and Dale B. Wigley
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13492–13497. Published online 2002 October 7. doi: 10.1073/pnas.212449899.
PMCID: PMC129701
Generation and characterization of androgen receptor knockout (ARKO) mice: An in vivo model for the study of androgen functions in selective tissues
Shuyuan Yeh, Meng-Yin Tsai, Qingquan Xu, Xiao-Min Mu, Henry Lardy, Ko-En Huang, Hank Lin, Shauh-Der Yeh, Saleh Altuwaijri, Xinchang Zhou, Lianping Xing, Brendan F. Boyce, Min-Chi Hung, Su Zhang, Lin Gan, and Chawnshang Chang
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13498–13503. Published online 2002 October 7. doi: 10.1073/pnas.212474399.
PMCID: PMC129702
Small heat-shock proteins regulate membrane lipid polymorphism
Nelly M. Tsvetkova, Ibolya Horváth, Zsolt Török, Willem F. Wolkers, Zsolt Balogi, Natalia Shigapova, Lois M. Crowe, Fern Tablin, Elizabeth Vierling, John H. Crowe, and László Vígh
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13504–13509. Published online 2002 October 4. doi: 10.1073/pnas.192468399.
PMCID: PMC129703
Helix–hairpin–helix motifs confer salt resistance and processivity on chimeric DNA polymerases
Andrey R. Pavlov, Galina I. Belova, Sergei A. Kozyavkin, and Alexei I. Slesarev
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13510–13515. Published online 2002 October 4. doi: 10.1073/pnas.202127199.
PMCID: PMC129704
A conserved flavin-shielding residue regulates NO synthase electron transfer and nicotinamide coenzyme specificity
Subrata Adak, Manisha Sharma, Abigail L. Meade, and Dennis J. Stuehr
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13516–13521. Published online 2002 October 1. doi: 10.1073/pnas.192283399.
PMCID: PMC129705
Crystal structure of human calcineurin complexed with cyclosporin A and human cyclophilin
Lei Jin and Stephen C. Harrison
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13522–13526. Published online 2002 September 30. doi: 10.1073/pnas.212504399.
PMCID: PMC129706
S-nitrosylation of dimethylarginine dimethylaminohydrolase regulates enzyme activity: Further interactions between nitric oxide synthase and dimethylarginine dimethylaminohydrolase
James Leiper, Judith Murray-Rust, Neil McDonald, and Patrick Vallance
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13527–13532. Published online 2002 October 7. doi: 10.1073/pnas.212269799.
PMCID: PMC129707
Biophysics
Critical points in charged membranes containing cholesterol
Arun Radhakrishnan and Harden M. McConnell
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13391–13396. Published online 2002 October 4. doi: 10.1073/pnas.212522699.
PMCID: PMC129683
Lipid–protein interactions in DHPC micelles containing the integral membrane protein OmpX investigated by NMR spectroscopy
César Fernández, Christian Hilty, Gerhard Wider, and Kurt Wüthrich
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13533–13537. Published online 2002 October 7. doi: 10.1073/pnas.212515099.
PMCID: PMC129708
Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior
Karen Adelman, Arthur La Porta, Thomas J. Santangelo, John T. Lis, Jeffrey W. Roberts, and Michelle D. Wang
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13538–13543. Published online 2002 October 7. doi: 10.1073/pnas.212358999.
PMCID: PMC129709
A two-state kinetic model for the unfolding of single molecules by mechanical force
F. Ritort, C. Bustamante, and I. Tinoco, Jr.
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13544–13548. Published online 2002 October 8. doi: 10.1073/pnas.172525099.
PMCID: PMC129710
Combinatorial mutagenesis to restrict amino acid usage in an enzyme to a reduced set
Satoshi Akanuma, Takanori Kigawa, and Shigeyuki Yokoyama
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13549–13553. Published online 2002 October 2. doi: 10.1073/pnas.222243999.
PMCID: PMC129711
Folding free energy function selects native-like protein sequences in the core but not on the surface
Alfonso Jaramillo, Lorenz Wernisch, Stéphanie Héry, and Shoshana J. Wodak
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13554–13559. Published online 2002 October 4. doi: 10.1073/pnas.212068599.
PMCID: PMC129712
Solution structure and dynamics of the outer membrane enzyme PagP by NMR
Peter M. Hwang, Wing-Yiu Choy, Eileen I. Lo, Lu Chen, Julie D. Forman-Kay, Christian R. H. Raetz, Gilbert G. Privé, Russell E. Bishop, and Lewis E. Kay
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13560–13565. Published online 2002 September 30. doi: 10.1073/pnas.212344499.
PMCID: PMC129713
Recognition of the DNA sequence by an inorganic crystal surface
Beatrice Sampaolese, Anna Bergia, Anita Scipioni, Giampaolo Zuccheri, Maria Savino, Bruno Samorì, and Pasquale De Santis
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13566–13570. Published online 2002 October 2. doi: 10.1073/pnas.202471699.
PMCID: PMC129714
Cell Biology
Tuberous sclerosis complex-1 and -2 gene products function together to inhibit mammalian target of rapamycin (mTOR)-mediated downstream signaling
Andrew R. Tee, Diane C. Fingar, Brendan D. Manning, David J. Kwiatkowski, Lewis C. Cantley, and John Blenis
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13571–13576. Published online 2002 September 23. doi: 10.1073/pnas.202476899.
PMCID: PMC129715
Electrical cues regulate the orientation and frequency of cell division and the rate of wound healing in vivo
Bing Song, Min Zhao, John V. Forrester, and Colin D. McCaig
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13577–13582. Published online 2002 October 4. doi: 10.1073/pnas.202235299.
PMCID: PMC129716
Higher order arrangement of the eukaryotic nuclear bodies
I-Fan Wang, Narsa M. Reddy, and C.-K. James Shen
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13583–13588. Published online 2002 October 2. doi: 10.1073/pnas.212483099.
PMCID: PMC129717
Developmental Biology
An endocrine pathway in the prostate, ERβ, AR, 5α-androstane-3β,17β-diol, and CYP7B1, regulates prostate growth
Zhang Weihua, Richard Lathe, Margaret Warner, and Jan-Åke Gustafsson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13589–13594. Published online 2002 October 7. doi: 10.1073/pnas.162477299.
PMCID: PMC129718
Ecology
Predicting the effects of climate change on avian life-history traits
David W. Winkler, Peter O. Dunn, and Charles E. McCulloch
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13595–13599. Published online 2002 October 7. doi: 10.1073/pnas.212251999.
PMCID: PMC129719
The functional integrity of normally forested landscapes: A proposal for an index of environmental capital
George M. Woodwell
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13600–13605. Published online 2002 October 4. doi: 10.1073/pnas.202035299.
PMCID: PMC129720
Evolution
Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations
Bin Cong, Jiping Liu, and Steven D. Tanksley
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13606–13611. Published online 2002 October 7. doi: 10.1073/pnas.172520999.
PMCID: PMC129721
Molecular evidence for ecological speciation in tropical habitats
Rob Ogden and Roger S. Thorpe
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13612–13615. Published online 2002 October 7. doi: 10.1073/pnas.212248499.
PMCID: PMC129722
Linkage limits the power of natural selection in Drosophila
Andrea J. Betancourt and Daven C. Presgraves
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13616–13620. Published online 2002 October 7. doi: 10.1073/pnas.212277199.
PMCID: PMC129723
From the Cover:
Evolution of moth sex pheromones via ancestral genes
Wendell L. Roelofs, Weitian Liu, Guixia Hao, Hongmei Jiao, Alejandro P. Rooney, and Charles E. Linn, Jr.
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13621–13626. Published online 2002 September 17. doi: 10.1073/pnas.152445399.
PMCID: PMC129724
The hidden duplication past of Arabidopsis thaliana
Cedric Simillion, Klaas Vandepoele, Marc C. E. Van Montagu, Marc Zabeau, and Yves Van de Peer
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13627–13632. Published online 2002 October 8. doi: 10.1073/pnas.212522399.
PMCID: PMC129725
Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels
Roy J. Britten
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13633–13635. Published online 2002 October 4. doi: 10.1073/pnas.172510699.
PMCID: PMC129726
Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome
Corinne Dasilva, Hajer Hadji, Catherine Ozouf-Costaz, Sophie Nicaud, Olivier Jaillon, Jean Weissenbach, and Hugues Roest Crollius
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13636–13641. Published online 2002 October 4. doi: 10.1073/pnas.202284199.
PMCID: PMC129727
Genetics
Computer assisted cloning of human neutral α-glucosidase C (GANC): A new paralog in the glycosyl hydrolase gene family 31
R. Hirschhorn, M. L. Huie, and J. S. Kasper
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13642–13646. Published online 2002 October 7. doi: 10.1073/pnas.202383599.
PMCID: PMC129728
DBC2, a candidate for a tumor suppressor gene involved in breast cancer
Masaaki Hamaguchi, Jennifer L. Meth, Christine von Klitzing, Wen Wei, Diane Esposito, Linda Rodgers, Tom Walsh, Piri Welcsh, Mary-Claire King, and Michael H. Wigler
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13647–13652. Published online 2002 October 7. doi: 10.1073/pnas.212516099.
PMCID: PMC129730
SIRT3, a human SIR2 homologue, is an NAD- dependent deacetylase localized to mitochondria
Patrick Onyango, Ivana Celic, J. Michael McCaffery, Jef D. Boeke, and Andrew P. Feinberg
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13653–13658. Published online 2002 October 8. doi: 10.1073/pnas.222538099.
PMCID: PMC129731
Two regulatory levels of transcriptional gene silencing in Arabidopsis
Ortrun Mittelsten Scheid, Aline V. Probst, Karin Afsar, and Jerzy Paszkowski
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13659–13662. Published online 2002 October 7. doi: 10.1073/pnas.202380499.
PMCID: PMC129733
Genomewide analysis of the Drosophila tetraspanins reveals a subset with similar function in the formation of the embryonic synapse
Lee G. Fradkin, Jessica T. Kamphorst, Aaron DiAntonio, Corey S. Goodman, and Jasprina N. Noordermeer
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13663–13668. Published online 2002 October 7. doi: 10.1073/pnas.212511099.
PMCID: PMC129735
Yeast Tdp1 and Rad1-Rad10 function as redundant pathways for repairing Top1 replicative damage
John R. Vance and Thomas E. Wilson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13669–13674. Published online 2002 October 4. doi: 10.1073/pnas.202242599.
PMCID: PMC129737
Genetic and physiological data implicating the new human gene G72 and the gene for d-amino acid oxidase in schizophrenia
Ilya Chumakov, Marta Blumenfeld, Oxana Guerassimenko, Laurent Cavarec, Marta Palicio, Hadi Abderrahim, Lydie Bougueleret, Caroline Barry, Hiroaki Tanaka, Philippe La Rosa, Anne Puech, Nadia Tahri, Annick Cohen-Akenine, Sylvain Delabrosse, Sébastien Lissarrague, Françoise-Pascaline Picard, Karelle Maurice, Laurent Essioux, Philippe Millasseau, Pascale Grel, Virginie Debailleul, Anne-Marie Simon, Dominique Caterina, Isabelle Dufaure, Kattayoun Malekzadeh, Maria Belova, Jian-Jian Luan, Michel Bouillot, Jean-Luc Sambucy, Gwenael Primas, Martial Saumier, Nadia Boubkiri, Sandrine Martin-Saumier, Myriam Nasroune, Hélène Peixoto, Arnaud Delaye, Virginie Pinchot, Mariam Bastucci, Sophie Guillou, Magali Chevillon, Ricardo Sainz-Fuertes, Said Meguenni, Joan Aurich-Costa, Dorra Cherif, Anne Gimalac, Cornelia Van Duijn, Denis Gauvreau, Gail Ouelette, Isabel Fortier, John Realson, Tatiana Sherbatich, Nadejda Riazanskaia, Evgeny Rogaev, Peter Raeymaekers, Jeroen Aerssens, Frank Konings, Walter Luyten, Fabio Macciardi, Pak C. Sham, Richard E. Straub, Daniel R. Weinberger, Nadine Cohen, and Daniel Cohen
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13675–13680. Published online 2002 October 3. doi: 10.1073/pnas.182412499.
PMCID: PMC129739
Immunology
Macrophage migration inhibitory factor (MIF) plays a pivotal role in immunity against Salmonella typhimurium
Heidrun Koebernick, Leander Grode, John R. David, Wolfgang Rohde, Michael S. Rolph, Hans-Willi Mittrücker, and Stefan H. E. Kaufmann
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13681–13686. Published online 2002 September 23. doi: 10.1073/pnas.212488699.
PMCID: PMC129741
A family of MHC class I-like genes located in the vicinity of the mouse leukocyte receptor complex
Masanori Kasahara, Yutaka Watanabe, Motoko Sumasu, and Taeko Nagata
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13687–13692. Published online 2002 October 7. doi: 10.1073/pnas.212375299.
PMCID: PMC129743
The origin of a developmentally regulated Igh replicon is located near the border of regulatory domains for Igh replication and expression
Jie Zhou, Nasrin Ashouian, Marc Delepine, Fumihiko Matsuda, Christophe Chevillard, Roy Riblet, Carl L. Schildkraut, and Barbara K. Birshtein
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13693–13698. Published online 2002 October 7. doi: 10.1073/pnas.212392399.
PMCID: PMC129745
On the power of chemical synthesis: Immunological evaluation of models for multiantigenic carbohydrate-based cancer vaccines
Govindaswami Ragupathi, Don M. Coltart, Lawrence J. Williams, Fusataka Koide, Ella Kagan, Jennifer Allen, Christina Harris, Peter W. Glunz, Philip O. Livingston, and Samuel J. Danishefsky
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13699–13704. Published online 2002 October 1. doi: 10.1073/pnas.202427599.
PMCID: PMC129747
Overexpression of a pattern-recognition receptor, peptidoglycan-recognition protein-LE, activates imd/relish-mediated antibacterial defense and the prophenoloxidase cascade in Drosophila larvae
Aya Takehana, Tomonori Katsuyama, Tamaki Yano, Yoshiteru Oshima, Haruhiko Takada, Toshiro Aigaki, and Shoichiro Kurata
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13705–13710. Published online 2002 October 1. doi: 10.1073/pnas.212301199.
PMCID: PMC129750
B cells develop in the zebrafish pancreas
Nadia Danilova and Lisa A. Steiner
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13711–13716. Published online 2002 October 7. doi: 10.1073/pnas.212515999.
PMCID: PMC129751
Depletion of neutrophils blocks the recruitment of antigen-nonspecific cells into the liver without affecting the antiviral activity of hepatitis B virus-specific cytotoxic T lymphocytes
Giovanni Sitia, Masanori Isogawa, Kazuhiro Kakimi, Stefan F. Wieland, Francis V. Chisari, and Luca G. Guidotti
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13717–13722. Published online 2002 October 4. doi: 10.1073/pnas.172521999.
PMCID: PMC129753
A complex of the IL-1 homologue IL-1F7b and IL-18-binding protein reduces IL-18 activity
Philip Bufler, Tania Azam, Fabia Gamboni-Robertson, Leonid L. Reznikov, Sanjay Kumar, Charles A. Dinarello, and Soo-Hyun Kim
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13723–13728. doi: 10.1073/pnas.212519099.
PMCID: PMC129755
Soluble peptide–MHC monomers cause activation of CD8+ T cells through transfer of the peptide to T cell MHC molecules
Qing Ge, Jennifer D. Stone, M. Todd Thompson, Jennifer R. Cochran, Mia Rushe, Herman N. Eisen, Jianzhu Chen, and Lawrence J. Stern
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13729–13734. Published online 2002 October 8. doi: 10.1073/pnas.212515299.
PMCID: PMC129758
Class I negative CD8 T cells reveal the confounding role of peptide-transfer onto CD8 T cells stimulated with soluble H2-Kb molecules
Eckart Schott, Nicolas Bertho, Qing Ge, Madelon M. Maurice, and Hidde L. Ploegh
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13735–13740. Published online 2002 October 8. doi: 10.1073/pnas.212515399.
PMCID: PMC129760
CD1d and invariant NKT cells at the human maternal–fetal interface
Jonathan E. Boyson, Basya Rybalov, Louise A. Koopman, Mark Exley, Steven P. Balk, Frederick K. Racke, Frederick Schatz, Rachel Masch, S. Brian Wilson, and Jack L. Strominger
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13741–13746. Published online 2002 October 4. doi: 10.1073/pnas.162491699.
PMCID: PMC129762
Stimulation of HIV-specific cellular immunity by structured treatment interruption fails to enhance viral control in chronic HIV infection
Annette Oxenius, David A. Price, Huldrych F. Günthard, Sara J. Dawson, Catherine Fagard, Luc Perrin, Marek Fischer, Rainer Weber, Montserrat Plana, Felipe García, Bernard Hirschel, Angela McLean, and Rodney E. Phillips
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13747–13752. Published online 2002 October 7. doi: 10.1073/pnas.202372199.
PMCID: PMC129766
Functional evidence for the mediation of diabetogenic T cell responses by HLA-A2.1 MHC class I molecules through transgenic expression in NOD mice
Michele P. Marron, Robert T. Graser, Harold D. Chapman, and David V. Serreze
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13753–13758. Published online 2002 October 2. doi: 10.1073/pnas.212221199.
PMCID: PMC129768
IL-2 negatively regulates IL-7 receptor α chain expression in activated T lymphocytes
Hai-Hui Xue, Panu E. Kovanen, Cynthia A. Pise-Masison, Maria Berg, Michael F. Radovich, John N. Brady, and Warren J. Leonard
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13759–13764. Published online 2002 September 27. doi: 10.1073/pnas.212214999.
PMCID: PMC129770
Natural killer cells attack tumor cells expressing high levels of sialyl Lewis x oligosaccharides
Chikara Ohyama, Satoru Kanto, Kazunori Kato, Osamu Nakano, Yoichi Arai, Tetsuro Kato, Shihao Chen, Michiko N. Fukuda, and Minoru Fukuda
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13789–13794. Published online 2002 October 7. doi: 10.1073/pnas.212456599.
PMCID: PMC129776
Medical Sciences
From the Cover:
Bystander effect produced by radiolabeled tumor cells in vivo
Lanny Y. Xue, Nicholas J. Butler, G. Mike Makrigiorgos, S. James Adelstein, and Amin I. Kassis
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13765–13770. Published online 2002 October 4. doi: 10.1073/pnas.182209699.
PMCID: PMC129772
APC-dependent suppression of colon carcinogenesis by PPARγ
Geoffrey D. Girnun, Wendy M. Smith, Stavit Drori, Pasha Sarraf, Elisabetta Mueller, Charis Eng, Prashant Nambiar, Daniel W. Rosenberg, Roderick T. Bronson, Winfried Edelmann, Raju Kucherlapati, Frank J. Gonzalez, and Bruce M. Spiegelman
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13771–13776. Published online 2002 October 7. doi: 10.1073/pnas.162480299.
PMCID: PMC129773
Long-term systemic therapy of Fabry disease in a knockout mouse by adeno-associated virus-mediated muscle-directed gene transfer
Hiroshi Takahashi, Yukihiko Hirai, Makoto Migita, Yoshihiko Seino, Yuh Fukuda, Hitoshi Sakuraba, Ryoichi Kase, Toshihide Kobayashi, Yasuhiro Hashimoto, and Takashi Shimada
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13777–13782. Published online 2002 October 7. doi: 10.1073/pnas.222221899.
PMCID: PMC129774
Increased noise as an effect of haploinsufficiency of the tumor-suppressor gene neurofibromatosis type 1 in vitro
Ralf Kemkemer, Stephanie Schrank, Walther Vogel, Hans Gruler, and Dieter Kaufmann
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13783–13788. Published online 2002 October 4. doi: 10.1073/pnas.212386999.
PMCID: PMC129775
Natural killer cells attack tumor cells expressing high levels of sialyl Lewis x oligosaccharides
Chikara Ohyama, Satoru Kanto, Kazunori Kato, Osamu Nakano, Yoichi Arai, Tetsuro Kato, Shihao Chen, Michiko N. Fukuda, and Minoru Fukuda
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13789–13794. Published online 2002 October 7. doi: 10.1073/pnas.212456599.
PMCID: PMC129776
From the Cover:
HIV-1 infection and AIDS dementia are influenced by a mutant MCP-1 allele linked to increased monocyte infiltration of tissues and MCP-1 levels
Enrique Gonzalez, Brad H. Rovin, Luisa Sen, Glen Cooke, Rahul Dhanda, Srinivas Mummidi, Hemant Kulkarni, Michael J. Bamshad, Vanessa Telles, Stephanie A. Anderson, Elizabeth A. Walter, Kevin T. Stephan, Michael Deucher, Andrea Mangano, Rosa Bologna, Seema S. Ahuja, Matthew J. Dolan, and Sunil K. Ahuja
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13795–13800. Published online 2002 October 8. doi: 10.1073/pnas.202357499.
PMCID: PMC129777
Regulation of a xenobiotic sulfonation cascade by nuclear pregnane X receptor (PXR)
Junichiro Sonoda, Wen Xie, John M. Rosenfeld, Joyce L. Barwick, Philip S. Guzelian, and Ronald M. Evans
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13801–13806. Published online 2002 October 7. doi: 10.1073/pnas.212494599.
PMCID: PMC129778
Microbiology
Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon
James W. Wilson, Rajee Ramamurthy, Steffen Porwollik, Michael McClelland, Timothy Hammond, Pat Allen, C. Mark Ott, Duane L. Pierson, and Cheryl A. Nickerson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13807–13812. Published online 2002 October 7. doi: 10.1073/pnas.212387899.
PMCID: PMC129779
Amino acid deletions are introduced into the V2 region of gp120 during independent pathogenic simian immunodeficiency virus/HIV chimeric virus (SHIV) infections of rhesus monkeys generating variants that are macrophage tropic
Hiromi Imamichi, Tatsuhiko Igarashi, Tomozumi Imamichi, Olivia K. Donau, Yasuyuki Endo, Yoshiaki Nishimura, Ronald L. Willey, Anthony F. Suffredini, H. Clifford Lane, and Malcolm A. Martin
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13813–13818. Published online 2002 October 7. doi: 10.1073/pnas.212511599.
PMCID: PMC129780
Suppression of lipopolysaccharide-induced antiviral transcription factor (STAT-1 and NF-κB) complexes by antibody-dependent enhancement of macrophage infection by Ross River virus
Surendran Mahalingam and Brett A. Lidbury
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13819–13824. Published online 2002 October 3. doi: 10.1073/pnas.202415999.
PMCID: PMC129781
Hydrodynamic injection of viral DNA: A mouse model of acute hepatitis B virus infection
Priscilla L. Yang, Alana Althage, Josan Chung, and Francis V. Chisari
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13825–13830. Published online 2002 October 8. doi: 10.1073/pnas.202398599.
PMCID: PMC129782
Identification of a localization factor for the polar positioning of bacterial structural and regulatory proteins
Patrick H. Viollier, Nitzan Sternheim, and Lucy Shapiro
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13831–13836. Published online 2002 October 7. doi: 10.1073/pnas.182411999.
PMCID: PMC129783
Pathogenic and nonpathogenic hantaviruses differentially regulate endothelial cell responses
Erika Geimonen, Sherry Neff, Tracy Raymond, Salih S. Kocer, Irina N. Gavrilovskaya, and Erich R. Mackow
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13837–13842. Published online 2002 October 4. doi: 10.1073/pnas.192298899.
PMCID: PMC129784
A dominant block to HIV-1 replication at reverse transcription in simian cells
Carsten Münk, Stephanie M. Brandt, Ginger Lucero, and Nathaniel R. Landau
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13843–13848. Published online 2002 October 4. doi: 10.1073/pnas.212400099.
PMCID: PMC129785
Existing antivirals are effective against influenza viruses with genes from the 1918 pandemic virus
Terrence M. Tumpey, Adolfo García-Sastre, Andrea Mikulasova, Jeffery K. Taubenberger, David E. Swayne, Peter Palese, and Christopher F. Basler
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13849–13854. Published online 2002 October 4. doi: 10.1073/pnas.212519699.
PMCID: PMC129786
Virulence control in group A Streptococcus by a two-component gene regulatory system: Global expression profiling and in vivo infection modeling
Morag R. Graham, Laura M. Smoot, Cristi A. Lux Migliaccio, Kimmo Virtaneva, Daniel E. Sturdevant, Stephen F. Porcella, Michael J. Federle, Gerald J. Adams, June R. Scott, and James M. Musser
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13855–13860. Published online 2002 October 7. doi: 10.1073/pnas.202353699.
PMCID: PMC129787
Innate recognition of bacteria by a macrophage cytosolic surveillance pathway
Mary O'Riordan, Caroline H. Yi, Ramona Gonzales, Kyung-Dall Lee, and Daniel A. Portnoy
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13861–13866. Published online 2002 October 1. doi: 10.1073/pnas.202476699.
PMCID: PMC129788
Neuroscience
From the Cover:
Members of the synaptobrevin/vesicle-associated membrane protein (VAMP) family in Drosophila are functionally interchangeable in vivo for neurotransmitter release and cell viability
Sharmila Bhattacharya, Bryan A. Stewart, Barbara A. Niemeyer, Robert W. Burgess, Brian D. McCabe, Peter Lin, Gabrielle Boulianne, Cahir J. O'Kane, and Thomas L. Schwarz
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13867–13872. Published online 2002 October 3. doi: 10.1073/pnas.202335999.
PMCID: PMC129789
Mice with chronic norepinephrine deficiency resemble amphetamine-sensitized animals
David Weinshenker, Nicole S. Miller, Katherine Blizinsky, Marc L. Laughlin, and Richard D. Palmiter
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13873–13877. Published online 2002 October 7. doi: 10.1073/pnas.212519999.
PMCID: PMC129790
Liver X receptors in the central nervous system: From lipid homeostasis to neuronal degeneration
Ling Wang, Gertrud U. Schuster, Kjell Hultenby, Qinghong Zhang, Sandra Andersson, and Jan-Åke Gustafsson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13878–13883. Published online 2002 October 4. doi: 10.1073/pnas.172510899.
PMCID: PMC129791
Reciprocal developmental regulation of presynaptic ionotropic receptors
Rostislav Turecek and Laurence O. Trussell
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13884–13889. Published online 2002 October 7. doi: 10.1073/pnas.212419699.
PMCID: PMC129792
Temporal expression of seven clock genes in the suprachiasmatic nucleus and the pars tuberalis of the sheep: Evidence for an internal coincidence timer
Gerald Lincoln, Sophie Messager, Håkan Andersson, and David Hazlerigg
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13890–13895. Published online 2002 October 8. doi: 10.1073/pnas.212517599.
PMCID: PMC129793
Tau filament formation and associative memory deficit in aged mice expressing mutant (R406W) human tau
Yoshitaka Tatebayashi, Tomohiro Miyasaka, De-Hua Chui, Takumi Akagi, Ken-ichi Mishima, Katsunori Iwasaki, Michihiro Fujiwara, Kentaro Tanemura, Miyuki Murayama, Koichi Ishiguro, Emmanuel Planel, Shinji Sato, Tsutomu Hashikawa, and Akihiko Takashima
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13896–13901. Published online 2002 October 4. doi: 10.1073/pnas.202205599.
PMCID: PMC129794
Direct interactions between PSD-95 and stargazin control synaptic AMPA receptor number
Eric Schnell, Max Sizemore, Siavash Karimzadegan, Lu Chen, David S. Bredt, and Roger A. Nicoll
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13902–13907. Published online 2002 October 1. doi: 10.1073/pnas.172511199.
PMCID: PMC129795
Involvement of stress-released corticotropin-releasing hormone in the basolateral amygdala in regulating memory consolidation
Benno Roozendaal, Kristen L. Brunson, Brian L. Holloway, James L. McGaugh, and Tallie Z. Baram
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13908–13913. Published online 2002 October 2. doi: 10.1073/pnas.212504599.
PMCID: PMC129796
Activity patterns in human motion-sensitive areas depend on the interpretation of global motion
Miguel Castelo-Branco, Elia Formisano, Walter Backes, Friedhelm Zanella, Sergio Neuenschwander, Wolf Singer, and Rainer Goebel
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13914–13919. Published online 2002 October 4. doi: 10.1073/pnas.202049999.
PMCID: PMC129797
The function of bursts of spikes during visual fixation in the awake primate lateral geniculate nucleus and primary visual cortex
Susana Martinez-Conde, Stephen L. Macknik, and David H. Hubel
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13920–13925. Published online 2002 October 2. doi: 10.1073/pnas.212500599.
PMCID: PMC129798
Pharmacology
From the Cover:
COX-3, a cyclooxygenase-1 variant inhibited by acetaminophen and other analgesic/antipyretic drugs: Cloning, structure, and expression
N. V. Chandrasekharan, Hu Dai, K. Lamar Turepu Roos, Nathan K. Evanson, Joshua Tomsik, Terry S. Elton, and Daniel L. Simmons
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13926–13931. Published online 2002 September 19. doi: 10.1073/pnas.162468699.
PMCID: PMC129799
Transport of nitrated albumin across continuous vascular endothelium
Dan Predescu, Sanda Predescu, and Asrar B. Malik
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13932–13937. Published online 2002 October 7. doi: 10.1073/pnas.212253499.
PMCID: PMC129800
Plant Biology
The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots
Hong-Qing Ling, Petra Bauer, Zsolt Bereczky, Beat Keller, and Martin Ganal
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13938–13943. Published online 2002 October 7. doi: 10.1073/pnas.212448699.
PMCID: PMC129801
Three semidominant barley mutants with single amino acid substitutions in the smallest magnesium chelatase subunit form defective AAA+ hexamers
A. Hansson, R. D. Willows, T. H. Roberts, and M. Hansson
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13944–13949. Published online 2002 September 30. doi: 10.1073/pnas.212504499.
PMCID: PMC129802
Population Biology
Natural radioactivity and human mitochondrial DNA mutations
Lucy Forster, Peter Forster, Sabine Lutz-Bonengel, Horst Willkomm, and Bernd Brinkmann
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13950–13954. Published online 2002 October 7. doi: 10.1073/pnas.202400499.
PMCID: PMC129803
Social Sciences
Psychology
Testosterone in utero and at birth dictates how stressful experience will affect learning in adulthood
Tracey J. Shors and George Miesegaes
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13955–13960. Published online 2002 October 1. doi: 10.1073/pnas.202199999.
PMCID: PMC129804
Corrections
Correction
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13961. Published online 2002 October 3. doi: 10.1073/pnas.222559599.
PMCID: PMC129670
Corrects: C. Kiong Ho, et al. Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc Natl Acad Sci U S A. 2002 October 1; 99(20): 12709–12714.
Correction
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13961. Published online 2002 October 2. doi: 10.1073/pnas.222515499.
PMCID: PMC129671
Corrects: Yoonseong Park, et al. Identification of G protein-coupled receptors for Drosophila PRXamide peptides, CCAP, corazonin, and AKH supports a theory of ligand-receptor coevolution. Proc Natl Acad Sci U S A. 2002 August 20; 99(17): 11423–11428.
Correction
Proc Natl Acad Sci U S A. 2002 October 15; 99(21): 13961. Published online 2002 October 2. doi: 10.1073/pnas.222439799.
PMCID: PMC129672
Corrects: T. P. Dinh, et al. Brain monoglyceride lipase participating in endocannabinoid inactivation. Proc Natl Acad Sci U S A. 2002 August 6; 99(16): 10819–10824.
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