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Volume 99(10);  May 14, 2002
Commentaries
Systemic wound signaling in plants: A new perception
Clarence A. Ryan and Daniel S. Moura
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6519–6520. doi: 10.1073/pnas.112196499.
PMCID: PMC124432
Push or pull? Teams of motor proteins have it both ways
Thomas Duke
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6521–6523. doi: 10.1073/pnas.112200199.
PMCID: PMC124433
Sea level is rising: Do we know why?
Mark F. Meier and John M. Wahr
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6524–6526. doi: 10.1073/pnas.112214499.
PMCID: PMC124434
Progress in rapid screening of Bacillus anthracis lethal factor activity
Michèle Mock and Bernard P. Roques
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6527–6529. doi: 10.1073/pnas.112220599.
PMCID: PMC124435
Cooperativity between bacterial chemotaxis receptors
Joseph J. Falke
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6530–6532. doi: 10.1073/pnas.112214199.
PMCID: PMC124436
Physical Sciences
Chemistry
Microrheometry of semiflexible actin networks through enforced single-filament reptation: Frictional coupling and heterogeneities in entangled networks
M. A. Dichtl and E. Sackmann
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6533–6538. Published online 2002 May 7. doi: 10.1073/pnas.052432499.
PMCID: PMC124437
From the Cover:
Drying-induced hydrophobic polymer collapse
Pieter Rein ten Wolde and David Chandler
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6539–6543. Published online 2002 April 30. doi: 10.1073/pnas.052153299.
PMCID: PMC124438
Gaussian fluctuations and linear response in an electron transfer protein
Thomas Simonson
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6544–6549. doi: 10.1073/pnas.082657099.
PMCID: PMC124439
Geophysics
From the Cover:
Twentieth century sea level: An enigma
Walter Munk
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6550–6555. doi: 10.1073/pnas.092704599.
PMCID: PMC124440
Origin of supposedly biogenic magnetite in the Martian meteorite Allan Hills 84001
David J. Barber and Edward R. D. Scott
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6556–6561. doi: 10.1073/pnas.102045799.
PMCID: PMC124441
Statistics
Selection bias in gene extraction on the basis of microarray gene-expression data
Christophe Ambroise and Geoffrey J. McLachlan
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6562–6566. Published online 2002 April 30. doi: 10.1073/pnas.102102699.
PMCID: PMC124442
Diagnosis of multiple cancer types by shrunken centroids of gene expression
Robert Tibshirani, Trevor Hastie, Balasubramanian Narasimhan, and Gilbert Chu
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6567–6572. doi: 10.1073/pnas.082099299.
PMCID: PMC124443
Biological Sciences
Applied Biological Sciences
Identification of in vivo expressed vaccine candidate antigens from Staphylococcus aureus
Hildegard Etz, Duc Bui Minh, Tamás Henics, Agnieszka Dryla, Birgit Winkler, Christine Triska, Aoife P. Boyd, Johannes Söllner, Walter Schmidt, Uwe von Ahsen, Michael Buschle, Steven R. Gill, James Kolonay, Hanif Khalak, Claire M. Fraser, Alexander von Gabain, Eszter Nagy, and Andreas Meinke
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6573–6578. Published online 2002 May 7. doi: 10.1073/pnas.092569199.
PMCID: PMC124444
Biochemistry
Structure-based design of mutant Methanococcus jannaschii tyrosyl-tRNA synthetase for incorporation of O-methyl-l-tyrosine
Deqiang Zhang, Nagarajan Vaidehi, William A. Goddard, III, Joseph F. Danzer, and Derek Debe
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6579–6584. doi: 10.1073/pnas.052150499.
PMCID: PMC124445
Telomerase recognizes its template by using an adjacent RNA motif
Michael C. Miller and Kathleen Collins
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6585–6590. Published online 2002 May 7. doi: 10.1073/pnas.102024699.
PMCID: PMC124446
Structure of 2C-methyl-d-erythritol 2,4- cyclodiphosphate synthase: An essential enzyme for isoprenoid biosynthesis and target for antimicrobial drug development
Lauris E. Kemp, Charles S. Bond, and William N. Hunter
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6591–6596. Published online 2002 May 7. doi: 10.1073/pnas.102679799.
PMCID: PMC124447
Directed evolution of novel polymerase activities: Mutation of a DNA polymerase into an efficient RNA polymerase
Gang Xia, Liangjing Chen, Takashi Sera, Ming Fa, Peter G. Schultz, and Floyd E. Romesberg
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6597–6602. doi: 10.1073/pnas.102577799.
PMCID: PMC124448
From the Cover:
A peptide-based fluorescence resonance energy transfer assay for Bacillus anthracis lethal factor protease
Richard T. Cummings, Scott P. Salowe, Barry R. Cunningham, Judyann Wiltsie, Young Whan Park, Lisa M. Sonatore, Douglas Wisniewski, Cameron M. Douglas, Jeffrey D. Hermes, and Edward M. Scolnick
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6603–6606. Published online 2002 May 7. doi: 10.1073/pnas.062171599.
PMCID: PMC124449
The 1.9-Å crystal structure of the noncollagenous (NC1) domain of human placenta collagen IV shows stabilization via a novel type of covalent Met-Lys cross-link
Manuel E. Than, Stefan Henrich, Robert Huber, Albert Ries, Karlheinz Mann, Klaus Kühn, Rupert Timpl, Gleb P. Bourenkov, Hans D. Bartunik, and Wolfram Bode
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6607–6612. doi: 10.1073/pnas.062183499.
PMCID: PMC124450
Changing the lactose permease of Escherichia coli into a galactose-specific symporter
Lan Guan, Miklós Sahin-Tóth, and H. Ronald Kaback
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6613–6618. doi: 10.1073/pnas.102178299.
PMCID: PMC124451
Toward development of a screen to identify randomly encoded, foldable sequences
Yoshihisa Hagihara and Peter S. Kim
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6619–6624. Published online 2002 May 7. doi: 10.1073/pnas.102172099.
PMCID: PMC124452
Looped out and perpendicular: Deformation of Watson–Crick base pair associated with actinomycin D binding
Shan-Ho Chou, Ko-Hsin Chin, and Fu-Ming Chen
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6625–6630. doi: 10.1073/pnas.102580399.
PMCID: PMC124453
Refined molecular hinge between allosteric and catalytic domain determines allosteric regulation and stability of fungal chorismate mutase
Kerstin Helmstaedt, Gabriele Heinrich, William N. Lipscomb, and Gerhard H. Braus
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6631–6636. Published online 2002 May 7. doi: 10.1073/pnas.092130899.
PMCID: PMC124454
Headpiece domain of dematin is required for the stability of the erythrocyte membrane
Richie Khanna, Seon H. Chang, Shaida Andrabi, Mohammad Azam, Anthony Kim, Alicia Rivera, Carlo Brugnara, Philip S. Low, Shih-Chun Liu, and Athar H. Chishti
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6637–6642. doi: 10.1073/pnas.052155999.
PMCID: PMC124455
Inhibition of mitochondrial protein synthesis results in increased endothelial cell susceptibility to nitric oxide-induced apoptosis
Anup Ramachandran, Douglas R. Moellering, Erin Ceaser, Sruti Shiva, Jun Xu, and Victor Darley-Usmar
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6643–6648. doi: 10.1073/pnas.102019899.
PMCID: PMC124456
The c-Myc target gene PRDX3 is required for mitochondrial homeostasis and neoplastic transformation
Diane R. Wonsey, Karen I. Zeller, and Chi V. Dang
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6649–6654. doi: 10.1073/pnas.102523299.
PMCID: PMC124457
The aflatoxin B1 formamidopyrimidine adduct plays a major role in causing the types of mutations observed in human hepatocellular carcinoma
Maryann E. Smela, Michelle L. Hamm, Paul T. Henderson, Constance M. Harris, Thomas M. Harris, and John M. Essigmann
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6655–6660. doi: 10.1073/pnas.102167699.
PMCID: PMC124458
Diketo acid inhibitor mechanism and HIV-1 integrase: Implications for metal binding in the active site of phosphotransferase enzymes
Jay A. Grobler, Kara Stillmock, Binghua Hu, Marc Witmer, Peter Felock, Amy S. Espeseth, Abigail Wolfe, Melissa Egbertson, Michele Bourgeois, Jeffrey Melamed, John S. Wai, Steve Young, Joseph Vacca, and Daria J. Hazuda
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6661–6666. Published online 2002 May 7. doi: 10.1073/pnas.092056199.
PMCID: PMC124459
Complete pathway for protein disulfide bond formation encoded by poxviruses
Tatiana G. Senkevich, Christine L. White, Eugene V. Koonin, and Bernard Moss
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6667–6672. Published online 2002 April 30. doi: 10.1073/pnas.062163799.
PMCID: PMC124460
Preferential binding of ATR protein to UV-damaged DNA
Keziban Ünsal-Kaçmaz, Alexander M. Makhov, Jack D. Griffith, and Aziz Sancar
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6673–6678. doi: 10.1073/pnas.102167799.
PMCID: PMC124461
The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H
Hisaaki Mihara, Shin-ichiro Kato, Gerard M. Lacourciere, Thressa C. Stadtman, Robert A. J. D. Kennedy, Tatsuo Kurihara, Umechiyo Tokumoto, Yasuhiro Takahashi, and Nobuyoshi Esaki
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6679–6683. Published online 2002 May 7. doi: 10.1073/pnas.102176099.
PMCID: PMC124462
FRS2α attenuates FGF receptor signaling by Grb2- mediated recruitment of the ubiquitin ligase Cbl
Andy Wong, Betty Lamothe, Arnold Lee, Joseph Schlessinger, and Irit Lax
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6684–6689. Published online 2002 May 7. doi: 10.1073/pnas.052138899.
PMCID: PMC124463
The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative
Mayuree Fuangthong and John D. Helmann
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6690–6695. Published online 2002 April 30. doi: 10.1073/pnas.102483199.
PMCID: PMC124464
Biophysics
Bidirectional cooperative motion of molecular motors
M. Badoual, F. Jülicher, and J. Prost
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6696–6701. doi: 10.1073/pnas.102692399.
PMCID: PMC124465
Key role of proline L209 in connecting the distant quinone pockets in the reaction center of Rhodobacter sphaeroides
J. Tandori, P. Maroti, E. Alexov, P. Sebban, and L. Baciou
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6702–6706. Published online 2002 April 30. doi: 10.1073/pnas.092327799.
PMCID: PMC124466
CLOUDS, a protocol for deriving a molecular proton density via NMR
Alexander Grishaev and Miguel Llinás
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6707–6712. doi: 10.1073/pnas.082114199.
PMCID: PMC124467
Protein structure elucidation from NMR proton densities
Alexander Grishaev and Miguel Llinás
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6713–6718. doi: 10.1073/pnas.042114399.
PMCID: PMC124468
Molecular dynamics simulations of protein folding from the transition state
Jörg Gsponer and Amedeo Caflisch
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6719–6724. Published online 2002 April 30. doi: 10.1073/pnas.092686399.
PMCID: PMC124469
Single-molecule height measurements on microsomal cytochrome P450 in nanometer-scale phospholipid bilayer disks
Timothy H. Bayburt and Stephen G. Sligar
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6725–6730. Published online 2002 May 7. doi: 10.1073/pnas.062565599.
PMCID: PMC124470
Energetics of glycerol conduction through aquaglyceroporin GlpF
Morten Ø. Jensen, Sanghyun Park, Emad Tajkhorshid, and Klaus Schulten
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6731–6736. Published online 2002 May 7. doi: 10.1073/pnas.102649299.
PMCID: PMC124471
Cell Biology
Identification of β-cell-specific insulin gene transcription factor RIPE3b1 as mammalian MafA
Martin Olbrot, Jonathan Rud, Larry G. Moss, and Arun Sharma
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6737–6742. doi: 10.1073/pnas.102168499.
PMCID: PMC124472
A flagellar K+-dependent Na+/Ca2+ exchanger keeps Ca2+ low in sea urchin spermatozoa
Yi-Hsien Su and Victor D. Vacquier
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6743–6748. doi: 10.1073/pnas.102186699.
PMCID: PMC124473
Identification of four candidate cGMP targets in Dictyostelium
Jonathan M. Goldberg, Leonard Bosgraaf, Peter J. M. Van Haastert, and Janet L. Smith
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6749–6754. doi: 10.1073/pnas.102167299.
PMCID: PMC124474
The δ subunit of AP-3 is required for efficient transport of VSV-G from the trans-Golgi network to the cell surface
Noriyuki Nishimura, Helen Plutner, Klaus Hahn, and William E. Balch
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6755–6760. Published online 2002 May 7. doi: 10.1073/pnas.092150699.
PMCID: PMC124475
Dynamic assembly of MinD on phospholipid vesicles regulated by ATP and MinE
Zonglin Hu, Edward P. Gogol, and Joe Lutkenhaus
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6761–6766. Published online 2002 April 30. doi: 10.1073/pnas.102059099.
PMCID: PMC124476
Endosomal localization and function of sorting nexin 1
Qi Zhong, Cheri S. Lazar, Hélène Tronchère, Trey Sato, Timo Meerloo, Michele Yeo, Zhou Songyang, Scott D. Emr, and Gordon N. Gill
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6767–6772. Published online 2002 May 7. doi: 10.1073/pnas.092142699.
PMCID: PMC124477
Inositol hexakisphosphate promotes dynamin I- mediated endocytosis
Marianne Høy, Alexander M. Efanov, Alejandro M. Bertorello, Sergei V. Zaitsev, Hervør L. Olsen, Krister Bokvist, Barbara Leibiger, Ingo B. Leibiger, Jean Zwiller, Per-Olof Berggren, and Jesper Gromada
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6773–6777. doi: 10.1073/pnas.102157499.
PMCID: PMC124478
Specific aneusomies in Chinese hamster cells at different stages of neoplastic transformation, initiated by nitrosomethylurea
Alice Fabarius, Andreas Willer, George Yerganian, Ruediger Hehlmann, and Peter Duesberg
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6778–6783. Published online 2002 May 7. doi: 10.1073/pnas.251670699.
PMCID: PMC124479
The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine
José L. Crespo, Ted Powers, Brian Fowler, and Michael N. Hall
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6784–6789. Published online 2002 May 7. doi: 10.1073/pnas.102687599.
PMCID: PMC124480
The intranuclear prolactin/cyclophilin B complex as a transcriptional inducer
Michael A. Rycyzyn and Charles V. Clevenger
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6790–6795. Published online 2002 May 7. doi: 10.1073/pnas.092160699.
PMCID: PMC124481
Clara cell impact in air-side activation of CFTR in small pulmonary airways
Hasan Kulaksiz, Andreas Schmid, Matthias Hönscheid, Annette Ramaswamy, and Yalcin Cetin
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6796–6801. doi: 10.1073/pnas.102171199.
PMCID: PMC124482
Developmental Biology
Genome-wide identification of tissue-specific enhancers in the Ciona tadpole
Naoe Harafuji, David N. Keys, and Michael Levine
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6802–6805. doi: 10.1073/pnas.052024999.
PMCID: PMC124483
BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma
Dmitri I. Loukinov, Elena Pugacheva, Sergei Vatolin, Svetlana D. Pack, Hanlim Moon, Igor Chernukhin, Poonam Mannan, Erik Larsson, Chandrasekhar Kanduri, Alexander A. Vostrov, Hengmi Cui, Emily L. Niemitz, John E. J. Rasko, France M. Docquier, Malathi Kistler, Joseph J. Breen, Zhengping Zhuang, Wolfgang W. Quitschke, Rainer Renkawitz, Elena M. Klenova, Andrew P. Feinberg, Rolf Ohlsson, Herbert C. Morse, III, and Victor V. Lobanenkov
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6806–6811. doi: 10.1073/pnas.092123699.
PMCID: PMC124484
Iris hypoplasia in mice that lack the alternatively spliced Pax6(5a) isoform
Sanjaya Singh, Rajnikant Mishra, Nelson A. Arango, Jian Min Deng, Richard R. Behringer, and Grady F. Saunders
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6812–6815. Published online 2002 April 30. doi: 10.1073/pnas.102691299.
PMCID: PMC124485
Epidermolysis bullosa and embryonic lethality in mice lacking the multi-PDZ domain protein GRIP1
Friedhelm Bladt, Anna Tafuri, Sigal Gelkop, Lowell Langille, and Tony Pawson
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6816–6821. Published online 2002 April 30. doi: 10.1073/pnas.092130099.
PMCID: PMC124486
Ecology
Mayolenes: Labile defensive lipids from the glandular hairs of a caterpillar (Pieris rapae)
Scott R. Smedley, Frank C. Schroeder, Douglas B. Weibel, Jerrold Meinwald, Katie A. Lafleur, J. Alan Renwick, Ronald Rutowski, and Thomas Eisner
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6822–6827. Published online 2002 May 7. doi: 10.1073/pnas.102165699.
PMCID: PMC124487
Evolution
The genetics of maternal care: Direct and indirect genetic effects on phenotype in the dung beetle Onthophagus taurus
John Hunt and Leigh W. Simmons
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6828–6832. Published online 2002 April 30. doi: 10.1073/pnas.092676199.
PMCID: PMC124488
Laurasian migration explains Gondwanan disjunctions: Evidence from Malpighiaceae
Charles C. Davis, Charles D. Bell, Sarah Mathews, and Michael J. Donoghue
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6833–6837. Published online 2002 April 30. doi: 10.1073/pnas.102175899.
PMCID: PMC124489
The development of immunity in a social insect: Evidence for the group facilitation of disease resistance
James F. A. Traniello, Rebeca B. Rosengaus, and Keely Savoie
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6838–6842. doi: 10.1073/pnas.102176599.
PMCID: PMC124490
Sex-ratio conflicts, kin selection, and the evolution of altruism
Wladimir J. Alonso and Cynthia Schuck-Paim
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6843–6847. Published online 2002 May 7. doi: 10.1073/pnas.092584299.
PMCID: PMC124491
The root of the angiosperms revisited
Michael J. Zanis, Douglas E. Soltis, Pamela S. Soltis, Sarah Mathews, and Michael J. Donoghue
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6848–6853. doi: 10.1073/pnas.092136399.
PMCID: PMC124492
Anatomical and ecological constraints on Phanerozoic animal diversity in the marine realm
Richard K. Bambach, Andrew H. Knoll, and J. John Sepkoski, Jr.
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6854–6859. doi: 10.1073/pnas.092150999.
PMCID: PMC124493
Genetics
Mutations associated with base excision repair deficiency and methylation-induced genotoxic stress
Robert W. Sobol, David E. Watson, Jun Nakamura, F. Michael Yakes, Esther Hou, Julie K. Horton, Joseph Ladapo, Bennett Van Houten, James A. Swenberg, Kenneth R. Tindall, Leona D. Samson, and Samuel H. Wilson
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6860–6865. Published online 2002 April 30. doi: 10.1073/pnas.092662499.
PMCID: PMC124494
Segregation distortion induced by wild-type RanGAP in Drosophila
Ayumi Kusano, Cynthia Staber, and Barry Ganetzky
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6866–6870. Published online 2002 May 7. doi: 10.1073/pnas.102165099.
PMCID: PMC124495
Cyclin D3 activates Caspase 2, connecting cell proliferation with cell death
Andrew R. Mendelsohn, Janice D. Hamer, Zhaoyuan Bill Wang, and Roger Brent
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6871–6876. doi: 10.1073/pnas.072290599.
PMCID: PMC124496
Elevated mutation rates in the germ line of first- and second-generation offspring of irradiated male mice
Ruth Barber, Mark A. Plumb, Emma Boulton, Isabelle Roux, and Yuri E. Dubrova
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6877–6882. Published online 2002 May 7. doi: 10.1073/pnas.102015399.
PMCID: PMC124497
Position-effect protection and enhancer blocking by the chicken β-globin insulator are separable activities
Félix Recillas-Targa, Michael J. Pikaart, Bonnie Burgess-Beusse, Adam C. Bell, Michael D. Litt, Adam G. West, Miklos Gaszner, and Gary Felsenfeld
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6883–6888. doi: 10.1073/pnas.102179399.
PMCID: PMC124498
ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos
Robert W. Williams and Gerald M. Rubin
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6889–6894. doi: 10.1073/pnas.072190799.
PMCID: PMC124499
Mnd1p: An evolutionarily conserved protein required for meiotic recombination
Jennifer L. Gerton and Joseph L. DeRisi
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6895–6900. doi: 10.1073/pnas.102167899.
PMCID: PMC124500
Immunology
Global changes in gene expression by human polymorphonuclear leukocytes during receptor-mediated phagocytosis: Cell fate is regulated at the level of gene expression
Scott D. Kobayashi, Jovanka M. Voyich, Cassandra L. Buhl, Robert M. Stahl, and Frank R. DeLeo
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6901–6906. Published online 2002 April 30. doi: 10.1073/pnas.092148299.
PMCID: PMC124501
CFTR is a pattern recognition molecule that extracts Pseudomonas aeruginosa LPS from the outer membrane into epithelial cells and activates NF-κB translocation
Torsten H. Schroeder, Martin M. Lee, Patrick W. Yacono, Carolyn L. Cannon, A. Alev Gerçeker, David E. Golan, and Gerald B. Pier
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6907–6912. Published online 2002 May 7. doi: 10.1073/pnas.092160899.
PMCID: PMC124502
Broadly cross-reactive HIV-1-neutralizing human monoclonal Fab selected for binding to gp120–CD4–CCR5 complexes
Maxime Moulard, Sanjay K. Phogat, Yuuei Shu, Aran F. Labrijn, Xiaodong Xiao, James M. Binley, Mei-Yun Zhang, Igor A. Sidorov, Christopher C. Broder, James Robinson, Paul W. H. I. Parren, Dennis R. Burton, and Dimiter S. Dimitrov
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6913–6918. Published online 2002 May 7. doi: 10.1073/pnas.102562599.
PMCID: PMC124503
ATP6S1 elicits potent humoral responses associated with immune-mediated tumor destruction
F. Stephen Hodi, Jan C. Schmollinger, Robert J. Soiffer, Ravi Salgia, Thomas Lynch, Jerome Ritz, Edwin P. Alyea, Jihong Yang, Donna Neuberg, Martin Mihm, and Glenn Dranoff
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6919–6924. Published online 2002 April 30. doi: 10.1073/pnas.102025999.
PMCID: PMC124504
Siva-1 binds to and inhibits BCL-XL-mediated protection against UV radiation-induced apoptosis
Li Xue, Fei Chu, Yuan Cheng, Xiangjie Sun, Alip Borthakur, Manjunath Ramarao, Pramod Pandey, Mei Wu, Stuart F. Schlossman, and Kanteti V. S. Prasad
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6925–6930. doi: 10.1073/pnas.102182299.
PMCID: PMC124505
Negative selection of thymocytes expressing the D10 TCR
Derek B. Sant'Angelo and Charles A. Janeway, Jr.
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6931–6936. doi: 10.1073/pnas.102182499.
PMCID: PMC124506
Positive selection of self-MHC-reactive T cells by individual peptide–MHC class II complexes
Gregory M. Barton, Courtney Beers, Paul deRoos, Susan R. Eastman, Marcela E. Gomez, Katherine A. Forbush, and Alexander Y. Rudensky
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6937–6942. doi: 10.1073/pnas.102645699.
PMCID: PMC124507
Medical Sciences
The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6
Raymond E. Soccio, Rachel M. Adams, Michael J. Romanowski, Ephraim Sehayek, Stephen K. Burley, and Jan L. Breslow
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6943–6948. doi: 10.1073/pnas.052143799.
PMCID: PMC124508
Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain
Michael J. Romanowski, Raymond E. Soccio, Jan L. Breslow, and Stephen K. Burley
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6949–6954. doi: 10.1073/pnas.052140699.
PMCID: PMC124509
Human chronic lymphocytic leukemia modeled in mouse by targeted TCL1 expression
Roberta Bichi, Susan A. Shinton, Eric S. Martin, Anatoliy Koval, George A. Calin, Rossano Cesari, Giandomenico Russo, Richard R. Hardy, and Carlo M. Croce
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6955–6960. doi: 10.1073/pnas.102181599.
PMCID: PMC124510
Noninvasive imaging of protein–protein interactions in living animals
Gary D. Luker, Vijay Sharma, Christina M. Pica, Julie L. Dahlheimer, Wei Li, Joseph Ochesky, Christine E. Ryan, Helen Piwnica-Worms, and David Piwnica-Worms
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6961–6966. Published online 2002 May 7. doi: 10.1073/pnas.092022399.
PMCID: PMC124511
Initiating oncogenic event determines gene-expression patterns of human breast cancer models
Kartiki V. Desai, Nianqing Xiao, Weili Wang, Lisa Gangi, John Greene, John I. Powell, Robert Dickson, Priscilla Furth, Kent Hunter, Raju Kucherlapati, Richard Simon, Edison T. Liu, and Jeffrey E. Green
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6967–6972. doi: 10.1073/pnas.102172399.
PMCID: PMC124512
β-Catenin stabilization dysregulates mesenchymal cell proliferation, motility, and invasiveness and causes aggressive fibromatosis and hyperplastic cutaneous wounds
Sophia S. Cheon, Alexander Y. L. Cheah, Stefanie Turley, Puviindran Nadesan, Raymond Poon, Hans Clevers, and Benjamin A. Alman
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6973–6978. Published online 2002 April 30. doi: 10.1073/pnas.102657399.
PMCID: PMC124513
Transmissibility of systemic amyloidosis by a prion-like mechanism
Katarzyna Lundmark, Gunilla T. Westermark, Sofia Nyström, Charles L. Murphy, Alan Solomon, and Per Westermark
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6979–6984. doi: 10.1073/pnas.092205999.
PMCID: PMC124514
Neonatal hepatic steatosis by disruption of the adenosine kinase gene
Detlev Boison, Louis Scheurer, Valérie Zumsteg, Thomas Rülicke, Piotr Litynski, Brian Fowler, Sebastian Brandner, and Hanns Mohler
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6985–6990. Published online 2002 May 7. doi: 10.1073/pnas.092642899.
PMCID: PMC124515
Paracrine in vivo inhibitory effects of hepatitis B virus X protein (HBx) on liver cell proliferation: An alternative mechanism of HBx-related pathogenesis
J. Guilherme Tralhao, Jean Roudier, Serban Morosan, Carlo Giannini, Hong Tu, Cyril Goulenok, Françoise Carnot, Flora Zavala, Virginie Joulin, Dina Kremsdorf, and Christian Bréchot
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6991–6996. doi: 10.1073/pnas.092657699.
PMCID: PMC124516
MRP9, an unusual truncated member of the ABC transporter superfamily, is highly expressed in breast cancer
Tapan K. Bera, Carlo Iavarone, Vasantha Kumar, Sanghyuk Lee, Byungkook Lee, and Ira Pastan
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6997–7002. doi: 10.1073/pnas.102187299.
PMCID: PMC124517
AID-GFP chimeric protein increases hypermutation of Ig genes with no evidence of nuclear localization
Cristina Rada, John M. Jarvis, and César Milstein
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7003–7008. doi: 10.1073/pnas.092160999.
PMCID: PMC124518
Antitumor activity of cytotoxic T lymphocytes engineered to target vascular endothelial growth factor receptors
Thomas M. J. Niederman, Zoher Ghogawala, Bob S. Carter, Hillary S. Tompkins, Margaret M. Russell, and Richard C. Mulligan
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7009–7014. Published online 2002 May 7. doi: 10.1073/pnas.092562399.
PMCID: PMC124519
Persistent HIV-1 infection of natural killer cells in patients receiving highly active antiretroviral therapy
Antonio Valentin, Margherita Rosati, Daniel J. Patenaude, Angelos Hatzakis, Leondios G. Kostrikis, Marios Lazanas, Kathleen M. Wyvill, Robert Yarchoan, and George N. Pavlakis
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7015–7020. doi: 10.1073/pnas.102672999.
PMCID: PMC124520
Hypoxia alters gene expression in human neuroblastoma cells toward an immature and neural crest-like phenotype
Annika Jögi, Ingrid Øra, Helén Nilsson, Åsa Lindeheim, Yuichi Makino, Lorenz Poellinger, Håkan Axelson, and Sven Påhlman
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7021–7026. doi: 10.1073/pnas.102660199.
PMCID: PMC124521
Microbiology
Mailborne transmission of anthrax: Modeling and implications
Glenn F. Webb and Martin J. Blaser
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7027–7032. doi: 10.1073/pnas.102691499.
PMCID: PMC124522
Genome-wide screening for trait conferring genes using DNA microarrays
R. T. Gill, S. Wildt, Y. T. Yang, S. Ziesman, and G. Stephanopoulos
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7033–7038. Published online 2002 May 7. doi: 10.1073/pnas.102154799.
PMCID: PMC124523
Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: A tool for rapid bacterial identification
Friedrich von Wintzingerode, Sebastian Böcker, Cord Schlötelburg, Norman H. L. Chiu, Niels Storm, Christian Jurinke, Charles R. Cantor, Ulf B. Göbel, and Dirk van den Boom
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7039–7044. Published online 2002 April 30. doi: 10.1073/pnas.102165899.
PMCID: PMC124524
The lethal and edema factors of anthrax toxin bind only to oligomeric forms of the protective antigen
Jeremy Mogridge, Kristina Cunningham, D. Borden Lacy, Michael Mourez, and R. John Collier
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7045–7048. Published online 2002 May 7. doi: 10.1073/pnas.052160199.
PMCID: PMC124525
Mapping the lethal factor and edema factor binding sites on oligomeric anthrax protective antigen
Kristina Cunningham, D. Borden Lacy, Jeremy Mogridge, and R. John Collier
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7049–7053. Published online 2002 May 7. doi: 10.1073/pnas.062160399.
PMCID: PMC124526
Rescue of a pathogenic Marek's disease virus with overlapping cosmid DNAs: Use of a pp38 mutant to validate the technology for the study of gene function
Sanjay M. Reddy, Blanca Lupiani, Isabel M. Gimeno, Robert F. Silva, Lucy F. Lee, and Richard L. Witter
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7054–7059. Published online 2002 May 7. doi: 10.1073/pnas.092152699.
PMCID: PMC124527
From the Cover:
Collaborative signaling by mixed chemoreceptor teams in Escherichia coli
Peter Ames, Claudia A. Studdert, Rebecca H. Reiser, and John S. Parkinson
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7060–7065. Published online 2002 April 30. doi: 10.1073/pnas.092071899.
PMCID: PMC124528
Identification of a protein secretory pathway for the secretion of heat-labile enterotoxin by an enterotoxigenic strain of Escherichia coli
Marija Tauschek, Rebecca J. Gorrell, Richard A. Strugnell, and Roy M. Robins-Browne
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7066–7071. doi: 10.1073/pnas.092152899.
PMCID: PMC124529
Siderophore-mediated signaling regulates virulence factor production in Pseudomonas aeruginosa
Iain L. Lamont, Paul A. Beare, Urs Ochsner, Adriana I. Vasil, and Michael L. Vasil
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7072–7077. Published online 2002 May 7. doi: 10.1073/pnas.092016999.
PMCID: PMC124530
Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ
Shinji Masuda, Chen Dong, Danielle Swem, Aaron T. Setterdahl, David B. Knaff, and Carl E. Bauer
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7078–7083. Published online 2002 April 30. doi: 10.1073/pnas.102013099.
PMCID: PMC124531
Neurobiology
μ-Opioid receptors and limbic responses to aversive emotional stimuli
Israel Liberzon, Jon Kar Zubieta, Lorraine M. Fig, K. Luan Phan, Robert A. Koeppe, and Stephan F. Taylor
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7084–7089. doi: 10.1073/pnas.102174799.
PMCID: PMC124532
Abnormal development of the hippocampal dentate gyrus in mice lacking the CXCR4 chemokine receptor
Meiling Lu, Elizabeth A. Grove, and Richard J. Miller
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7090–7095. Published online 2002 April 30. doi: 10.1073/pnas.092013799.
PMCID: PMC124533
Differential roles for NSF and GRIP/ABP in AMPA receptor cycling
Steven P. Braithwaite, Houhui Xia, and Robert C. Malenka
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7096–7101. doi: 10.1073/pnas.102156099.
PMCID: PMC124534
The γ-secretase-generated intracellular domain of β-amyloid precursor protein binds Numb and inhibits Notch signaling
Roberta Roncarati, Nenad Šestan, Meir H. Scheinfeld, Bridget E. Berechid, Peter A. Lopez, Olimpia Meucci, Jane C. McGlade, Pasko Rakic, and Luciano D'Adamio
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7102–7107. doi: 10.1073/pnas.102192599.
PMCID: PMC124535
Centripetal and centrifugal reorganizations of frequency map of auditory cortex in gerbils
Masashi Sakai and Nobuo Suga
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7108–7112. Published online 2002 May 7. doi: 10.1073/pnas.102165399.
PMCID: PMC124536
Coupling asymmetry of heterotypic connexin 45/ connexin 43-EGFP gap junctions: Properties of fast and slow gating mechanisms
Feliksas F. Bukauskas, Angele Bukauskiene, Vytas K. Verselis, and Michael V. L. Bennett
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7113–7118. doi: 10.1073/pnas.032062099.
PMCID: PMC124537
Growth hormone induces age-dependent alteration in the expression of hippocampal growth hormone receptor and N-methyl-d-aspartate receptor subunits gene transcripts in male rats
Madeleine Le Grevès, Pia Steensland, Pierre Le Grevès, and Fred Nyberg
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7119–7123. doi: 10.1073/pnas.092135399.
PMCID: PMC124538
Dynamin-dependent and dynamin-independent processes contribute to the regulation of single vesicle release kinetics and quantal size
Margaret E. Graham, Dermott W. O'Callaghan, Harvey T. McMahon, and Robert D. Burgoyne
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7124–7129. Published online 2002 May 7. doi: 10.1073/pnas.102645099.
PMCID: PMC124539
Pharmacology
Determinants of the cellular specificity of acetaminophen as an inhibitor of prostaglandin H2 synthases
Olivier Boutaud, David M. Aronoff, Jacob H. Richardson, Lawrence J. Marnett, and John A. Oates
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7130–7135. doi: 10.1073/pnas.102588199.
PMCID: PMC124540
Anticonvulsant activity of a nonpeptide galanin receptor agonist
Külliki Saar, Andrey M. Mazarati, Riina Mahlapuu, Gerd Hallnemo, Ursel Soomets, Kalle Kilk, Sven Hellberg, Margus Pooga, Bo-Ragnar Tolf, Tiejun S. Shi, Tomas Hökfelt, Claude Wasterlain, Tamas Bartfai, and Ülo Langel
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7136–7141. doi: 10.1073/pnas.102163499.
PMCID: PMC124541
Physiology
Smooth muscle-selective deletion of guanylyl cyclase-A prevents the acute but not chronic effects of ANP on blood pressure
Rita Holtwick, Michael Gotthardt, Boris Skryabin, Martin Steinmetz, Regine Potthast, Bernd Zetsche, Robert E. Hammer, Joachim Herz, and Michaela Kuhn
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7142–7147. Published online 2002 May 7. doi: 10.1073/pnas.102650499.
PMCID: PMC124542
Corticotropin-releasing hormone: An autocrine hormone that promotes lipogenesis in human sebocytes
Christos C. Zouboulis, Holger Seltmann, Naoki Hiroi, WenChieh Chen, Maggie Young, Marina Oeff, Werner A. Scherbaum, Constantin E. Orfanos, Samuel M. McCann, and Stefan R. Bornstein
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7148–7153. doi: 10.1073/pnas.102180999.
PMCID: PMC124543
Aldosterone signaling pathway across the nuclear envelope
C. Schäfer, V. Shahin, L. Albermann, M. J. Hug, J. Reinhardt, H. Schillers, S. W. Schneider, and H. Oberleithner
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7154–7159. Published online 2002 April 30. doi: 10.1073/pnas.092140799.
PMCID: PMC124544
From the Cover:
Reversible cardiac fibrosis and heart failure induced by conditional expression of an antisense mRNA of the mineralocorticoid receptor in cardiomyocytes
Ahmed T. Beggah, Brigitte Escoubet, Stefania Puttini, Stephane Cailmail, Vanessa Delage, Antoine Ouvrard-Pascaud, Brigitte Bocchi, Michel Peuchmaur, Claude Delcayre, Nicolette Farman, and Frederic Jaisser
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7160–7165. Published online 2002 May 7. doi: 10.1073/pnas.102673599.
PMCID: PMC124545
Plant Biology
The starch-related R1 protein is an α-glucan, water dikinase
Gerhard Ritte, James R. Lloyd, Nora Eckermann, Antje Rottmann, Jens Kossmann, and Martin Steup
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7166–7171. doi: 10.1073/pnas.062053099.
PMCID: PMC124546
Carbocyclic fatty acids in plants: Biochemical and molecular genetic characterization of cyclopropane fatty acid synthesis of Sterculia foetida
Xiaoming Bao, Sue Katz, Mike Pollard, and John Ohlrogge
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7172–7177. Published online 2002 May 7. doi: 10.1073/pnas.092152999.
PMCID: PMC124547
Population Biology
Reproductive skew in the polygynandrous acorn woodpecker
Joseph Haydock and Walter D. Koenig
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7178–7183. Published online 2002 May 7. doi: 10.1073/pnas.102624199.
PMCID: PMC124548
Corrections
Correction
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7184. Published online 2002 April 30. doi: 10.1073/pnas.112148199.
PMCID: PMC124427
Corrects: Hongyu Ruan, et al. High-quality life extension by the enzyme peptide methionine sulfoxide reductase. Proc Natl Acad Sci U S A. 2002 March 5; 99(5): 2748–2753.
Correction
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7184. Published online 2002 April 30. doi: 10.1073/pnas.102148799.
PMCID: PMC124428
Corrects: Tory M. Hagen, et al. Feeding acetyl-l-carnitine and lipoic acid to old rats significantly improves metabolic function while decreasing oxidative stress. Proc Natl Acad Sci U S A. 2002 February 19; 99(4): 1870–1875.
Correction
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7184. doi: 10.1073/pnas.112140399.
PMCID: PMC124429
Corrects: S. I. Shah, et al. Study of Nd3+, Pd2+, Pt4+, and Fe3+ dopant effect on photoreactivity of TiO2 nanoparticles. Proc Natl Acad Sci U S A. 2002 April 30; 99(Suppl 2): 6482–6486.
Correction
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7184. doi: 10.1073/pnas.112148499.
PMCID: PMC124430
Corrects: Alexander G. Pletnev, et al. From the Cover:
West Nile virus/dengue type 4 virus chimeras that are reduced in neurovirulence and peripheral virulence without loss of immunogenicity or protective efficacy.
Proc Natl Acad Sci U S A. 2002 March 5; 99(5): 3036–3041.
Correction
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 7184. Published online 2002 April 30. doi: 10.1073/pnas.102105799.
PMCID: PMC124431
Corrects: Jiankang Liu, et al. Memory loss in old rats is associated with brain mitochondrial decay and RNA/DNA oxidation: Partial reversal by feeding acetyl-l-carnitine and/or R-α-lipoic acid. Proc Natl Acad Sci U S A. 2002 February 19; 99(4): 2356–2361.
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