| | Other Issues: previous | next | latest | archiveDatabase Database of ligand-induced domain movements in enzymes Guoying Qi and Steven Hayward PMCID: PMC2672080 Software ProteinShader: illustrative rendering of macromolecules Joseph R Weber PMCID: PMC2672931 Research Articles Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats Bangalore K Sathyanarayana, Yoonsoo Hahn, Manish S Patankar, Ira Pastan, and Byungkook Lee PMCID: PMC2628672 Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm Takuji Oyama, Hayato Oka, Kouta Mayanagi, Tsuyoshi Shirai, Kyoko Matoba, Ryosuke Fujikane, Yoshizumi Ishino, and Kosuke Morikawa PMCID: PMC2636818 Molecular models of human P-glycoprotein in two different catalytic states Jean-Paul Becker, Grégoire Depret, Françoise Van Bambeke, Paul M Tulkens, and Martine Prévost PMCID: PMC2661087 Analysing the origin of long-range interactions in proteins using lattice models Orly Noivirt-Brik, Ron Unger, and Amnon Horovitz PMCID: PMC2670300 Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks Ian Walsh, Davide Baù, Alberto JM Martin, Catherine Mooney, Alessandro Vullo, and Gianluca Pollastri PMCID: PMC2654788 Comparison of molecular dynamics and superfamily spaces of protein domain deformation Javier A Velázquez-Muriel, Manuel Rueda, Isabel Cuesta, Alberto Pascual-Montano, Modesto Orozco, and José-María Carazo PMCID: PMC2666742 The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2) Jonathan A Winger, Oliver Hantschel, Giulio Superti-Furga, and John Kuriyan PMCID: PMC2655291 Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks Moitrayee Bhattacharyya and Saraswathi Vishveshwara PMCID: PMC2656534 An unexpected phosphate binding site in Glyceraldehyde 3-Phosphate Dehydrogenase: Crystal structures of apo, holo and ternary complex of Cryptosporidium parvum enzyme William J Cook, Olga Senkovich, and Debasish Chattopadhyay PMCID: PMC2662861 An automatic method for assessing structural importance of amino acid positions Michael I Sadowski and David T Jones PMCID: PMC2667441 The glycine brace: a component of Rab, Rho, and Ran GTPases associated with hinge regions of guanine- and phosphate-binding loops Andrew F Neuwald PMCID: PMC2656535 Improving consensus structure by eliminating averaging artifacts Dukka B KC PMCID: PMC2662860 Implications of the structure of human uridine phosphorylase 1 on the development of novel inhibitors for improving the therapeutic window of fluoropyrimidine chemotherapy Tarmo P Roosild, Samantha Castronovo, Michael Fabbiani, and Giuseppe Pizzorno PMCID: PMC2664818 Rational mutagenesis to support structure-based drug design: MAPKAP kinase 2 as a case study Maria A Argiriadi, Silvino Sousa, David Banach, Douglas Marcotte, Tao Xiang, Medha J Tomlinson, Megan Demers, Christopher Harris, Silvia Kwak, Jennifer Hardman, Margaret Pietras, Lisa Quinn, Jennifer DiMauro, Baofu Ni, John Mankovich, David W Borhani, Robert V Talanian, and Ramkrishna Sadhukhan PMCID: PMC2678131 Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins Outi Heikkinen, Raili Seppala, Helena Tossavainen, Sami Heikkinen, Harri Koskela, Perttu Permi, and Ilkka Kilpeläinen PMCID: PMC2678132 Relationship between chemical shift value and accessible surface area for all amino acid atoms Wim F Vranken and Wolfgang Rieping PMCID: PMC2678133 Analysis of the impact of solvent on contacts prediction in proteins Sergey A Samsonov, Joan Teyra, Gerd Anders, and M Teresa Pisabarro PMCID: PMC2676287 Methodology Articles Structural pattern matching of nonribosomal peptides Ségolène Caboche, Maude Pupin, Valérie Leclère, Phillipe Jacques, and Gregory Kucherov PMCID: PMC2674430 Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis Gergely Csaba, Fabian Birzele, and Ralf Zimmer PMCID: PMC2678134 |
