| | Other Issues: previous | next | latest | archiveDatabase TRUNCATULIX – a data warehouse for the legume community Kolja Henckel, Kai J Runte, Thomas Bekel, Michael Dondrup, Tobias Jakobi, Helge Küster, and Alexander Goesmann PMCID: PMC2654896 Research Articles Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots Li Tian, Gregory J Peel, Zhentian Lei, Naveed Aziz, Xinbin Dai, Ji He, Bonnie Watson, Patrick X Zhao, Lloyd W Sumner, and Richard A Dixon PMCID: PMC2630931 FORCA, a promoter element that responds to crosstalk between defense and light signaling Alexandre Evrard, Theogene Ndatimana, and Thomas Eulgem PMCID: PMC2640394 A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis Beth A Rowan, Delene J Oldenburg, and Arnold J Bendich PMCID: PMC2632658 Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, and Marion S Röder PMCID: PMC2648977 In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana Susan L Urbanus, Stefan de Folter, Anna V Shchennikova, Kerstin Kaufmann, Richard GH Immink, and Gerco C Angenent PMCID: PMC2630930 Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes Zoran Minic, Elisabeth Jamet, Hélène San-Clemente, Sandra Pelletier, Jean-Pierre Renou, Christophe Rihouey, Denis PO Okinyo, Caroline Proux, Patrice Lerouge, and Lise Jouanin PMCID: PMC2649120 Effective carbon partitioning driven by exotic phloem-specific regulatory elements fused to the Arabidopsis thaliana AtSUC2 sucrose-proton symporter gene Avinash C Srivastava, Savita Ganesan, Ihab O Ismail, and Brian G Ayre PMCID: PMC2654897 Evidence for separate translocation pathways in determining cadmium accumulation in grain and aerial plant parts in rice Takayuki Kashiwagi, Kumiko Shindoh, Naoki Hirotsu, and Ken Ishimaru PMCID: PMC2632998 Differential effectiveness of Serratia plymuthica IC1270-induced systemic resistance against hemibiotrophic and necrotrophic leaf pathogens in rice David De Vleesschauwer, Leonid Chernin, and Monica M Höfte PMCID: PMC2650696 Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis S Karen Gomez, Hélène Javot, Prasit Deewatthanawong, Ivone Torres-Jerez, Yuhong Tang, Elison B Blancaflor, Michael K Udvardi, and Maria J Harrison PMCID: PMC2649119 Expression of genes associated with carbohydrate metabolism in cotton stems and roots Earl W Taliercio, Gabriela Romano, Jodi Scheffler, and Brian G Ayre PMCID: PMC2639587 Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming Martin Frenkel, Carsten Külheim, Hanna Johansson Jänkänpää, Oskar Skogström, Luca Dall'Osto, Jon Ågren, Roberto Bassi, Thomas Moritz, Jon Moen, and Stefan Jansson PMCID: PMC2656510 A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers Emma S Mace, Jean-Francois Rami, Sophie Bouchet, Patricia E Klein, Robert R Klein, Andrzej Kilian, Peter Wenzl, Ling Xia, Kirsten Halloran, and David R Jordan PMCID: PMC2671505 Construction of 12 EST libraries and characterization of a 12,226 EST dataset for chicory (Cichorium intybus) root, leaves and nodules in the context of carbohydrate metabolism investigation Nicolas Dauchot, Dominique Mingeot, Bénédicte Purnelle, Céline Muys, Bernard Watillon, Marc Boutry, and Pierre Van Cutsem PMCID: PMC2660907 Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling Anna Użarowska, Giuseppe Dionisio, Barbara Sarholz, Hans-Peter Piepho, Mingliang Xu, Christina Rønn Ingvardsen, Gerhard Wenzel, and Thomas Lübberstedt PMCID: PMC2669481 Characterization and comparative analysis of HMW glutenin 1Ay alleles with differential expressions Qian-Tao Jiang, Yu-Ming Wei, Feng Wang, Ji-Rui Wang, Ze-Hong Yan, and You-Liang Zheng PMCID: PMC2667398 Gibberellin mediates daylength-controlled differentiation of vegetative meristems in strawberry (Fragaria × ananassa Duch) Timo Hytönen, Paula Elomaa, Thomas Moritz, and Olavi Junttila PMCID: PMC2653492 The extracellular EXO protein mediates cell expansion in Arabidopsis leaves Florian Schröder, Janina Lisso, Peggy Lange, and Carsten Müssig PMCID: PMC2661892 Phenotypic instability and epigenetic variability in a diploid potato of hybrid origin, Solanum ruiz-lealii Carlos F Marfil, Elsa L Camadro, and Ricardo W Masuelli PMCID: PMC2656509 Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes Romain Guyot, Marion de la Mare, Véronique Viader, Perla Hamon, Olivier Coriton, José Bustamante-Porras, Valérie Poncet, Claudine Campa, Serge Hamon, and Alexandre de Kochko PMCID: PMC2656508 Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci Anne M Rae, Nathaniel Robert Street, Kathryn Megan Robinson, Nicole Harris, and Gail Taylor PMCID: PMC2657785 Characterization of PR-10 genes from eight Betula species and detection of Bet v 1 isoforms in birch pollen Martijn F Schenk, Jan HG Cordewener, Antoine HP America, Wendy PC van't Westende, Marinus JM Smulders, and Luud JWJ Gilissen PMCID: PMC2671506 Genomic expression profiling of mature soybean (Glycine max) pollen Farzad Haerizadeh, Chui E Wong, Prem L Bhalla, Peter M Gresshoff, and Mohan B Singh PMCID: PMC2660330 The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Alex Choi, Urmila Plakkat, Denis S DiLoreto, Priyadarshini Yellanki, and John E Carlson PMCID: PMC2662859 Regulation of callose synthase activity in situ in alamethicin-permeabilized Arabidopsis and tobacco suspension cells Mari Aidemark, Carl-Johan Andersson, Allan G Rasmusson, and Susanne Widell PMCID: PMC2667179 Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in Arabidopsis thaliana plantlets Fanny Ramel, Cécile Sulmon, Matthieu Bogard, Ivan Couée, and Gwenola Gouesbet PMCID: PMC2661893 Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants Debra J Skinner and Charles S Gasser PMCID: PMC2664812 The isolation and mapping of a novel hydroxycinnamoyltransferase in the globe artichoke chlorogenic acid pathway Cinzia Comino, Alain Hehn, Andrea Moglia, Barbara Menin, Frédéric Bourgaud, Sergio Lanteri, and Ezio Portis PMCID: PMC2664813 A compatible interaction of Alternaria brassicicola with Arabidopsis thaliana ecotype DiG: evidence for a specific transcriptional signature Arup K Mukherjee, Sophie Lev, Shimon Gepstein, and Benjamin A Horwitz PMCID: PMC2664814 Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana Cheng-Ri Zhao, Takashi Ikka, Yoshiharu Sawaki, Yuriko Kobayashi, Yuji Suzuki, Takashi Hibino, Shigeru Sato, Nozomu Sakurai, Daisuke Shibata, and Hiroyuki Koyama PMCID: PMC2666732 Plant origin and ploidy influence gene expression and life cycle characteristics in an invasive weed Amanda K Broz, Daniel K Manter, Gillianne Bowman, Heinz Müller-Schärer, and Jorge M Vivanco PMCID: PMC2670832 Cbf genes of the Fr-A2 allele are differentially regulated between long-term cold acclimated crown tissue of freeze-resistant and – susceptible, winter wheat mutant lines Fedora Sutton, Ding-Geng Chen, Xijin Ge, and Don Kenefick PMCID: PMC2663559 Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species Xuanqiang Liang, Xiaoping Chen, Yanbin Hong, Haiyan Liu, Guiyuan Zhou, Shaoxiong Li, and Baozhu Guo PMCID: PMC2678122 A new genomic resource dedicated to wood formation in Eucalyptus David Rengel, Hélène San Clemente, Florence Servant, Nathalie Ladouce, Etienne Paux, Patrick Wincker, Arnaud Couloux, Pierre Sivadon, and Jacqueline Grima-Pettenati PMCID: PMC2670833 Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants Malona V Alinsug, Chun-Wei Yu, and Keqiang Wu PMCID: PMC2671507 Plastid chaperonin proteins Cpn60α and Cpn60β are required for plastid division in Arabidopsis thaliana Kenji Suzuki, Hiromitsu Nakanishi, Joyce Bower, David W Yoder, Katherine W Osteryoung, and Shin-ya Miyagishima PMCID: PMC2670834 A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome Márcio C Moretzsohn, Andrea VG Barbosa, Dione MT Alves-Freitas, Cristiane Teixeira, Soraya CM Leal-Bertioli, Patrícia M Guimarães, Rinaldo W Pereira, Catalina R Lopes, Marcelo M Cavallari, José FM Valls, David J Bertioli, and Marcos A Gimenes PMCID: PMC2674605 Removing celiac disease-related gluten proteins from bread wheat while retaining technological properties: a study with Chinese Spring deletion lines Hetty C van den Broeck, Teun WJM van Herpen, Cees Schuit, Elma MJ Salentijn, Liesbeth Dekking, Dirk Bosch, Rob J Hamer, Marinus JM Smulders, Ludovicus JWJ Gilissen, and Ingrid M van der Meer PMCID: PMC2670835 Methodology Article A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis Hirotaka Takahashi, Akira Nozawa, Motoaki Seki, Kazuo Shinozaki, Yaeta Endo, and Tatsuya Sawasaki PMCID: PMC2674041 Correction Bioinformatic analysis of the CLE signaling peptide family Karsten Oelkers, Nicolas Goffard, Georg F Weiller, Peter M Gresshoff, Ulrike Mathesius, and Tancred Frickey PMCID: PMC2645403 Corrects: Karsten Oelkers, et al. Bioinformatic analysis of the CLE signaling peptide family. BMC Plant Biol. 2008; 8: 1. |
