Below are examples of some of the alignment formats our web interfaces recognize. In each example, two or more sequences are displayed in the given format. To convert the format of your sequence, we provide a Format Converter tool.
IMPORTANT! Do not convert your sequence files to a ".doc" file or open them in any word processing program. Sequence formats can be corrupted by cryptic changes introduced by word-processing programs and thus cause failures of sequence analysis tools.
FastA: >CPZANT ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACATGGGA AAGTATCAGGCTTCGGCCCGGTGGCAAGAAAAAGTACATGATAAAACATC TGGTTTGGGCAAGATCGGAGCTGCAGCGTTTTGCGCTCAGCTCCTCCCTT CTAGAAACATCAGAAGGTTGTGAAAAGGCTATCCATCAATTGAGCCCTTC CATAGAAATAAGATCCCCTGAAATAATATCTTTGTTTAACACCATTTGTG >U455 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGAAAAAATTAGATTCATGGGA GAAAATTCGGTTAAGGCCAGGGGGAAACAAAAAATATAGACTGAAACATT TAGTATGGGCAAGCAGGGAGCTGGAAAAATTCACACTTAACCCTGGCCTT TTAGAAACAGCAGAAGGATGTCAGCAAATACTGGGACAATTACAACCAGC TCTCCAGACAGGAACAGAAGAACTTAGATCATTATATAATACAGTAGCAG
Table: CPZANT ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACATGGGAAAGTATCAGGCTTCGGCCCGGTGGCAAGAAAAAGTACATGAT U455 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGAAAAAATTAGATTCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAACAAAAAATATAGACT
IG (IntelliGenetics): ; CPZANT ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACATGGGA AAGTATCAGGCTTCGGCCCGGTGGCAAGAAAAAGTACATGATAAAACATC TGGTTTGGGCAAGATCGGAGCTGCAGCGTTTTGCGCTCAGCTCCTCCCTT CTAGAAACATCAGAAGGTTGTGAAAAGGCTATCCATCAATTGAGCCCTTC CATAGAAATAAGATCCCCTGAAATAATATCTTTGTTTAACACCATTTGTG ; U455 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGAAAAAATTAGATTCATGGGA GAAAATTCGGTTAAGGCCAGGGGGAAACAAAAAATATAGACTGAAACATT TAGTATGGGCAAGCAGGGAGCTGGAAAAATTCACACTTAACCCTGGCCTT TTAGAAACAGCAGAAGGATGTCAGCAAATACTGGGACAATTACAACCAGC TCTCCAGACAGGAACAGAAGAACTTAGATCATTATATAATACAGTAGCAG
MSF: 1 50 CPZANT ATGGGAGCGG GGGCGTCTGT TTTGAGGGGA GAGAAGCTAG ATACATGGGA U455 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG AAAAAATTAG ATTCATGGGA BZ126B ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAAAATTAG ATGCTTGGGA IBNG ATGGGTGCGA GAGCGTCAGT ATTAAGTGGG GGAAAATTAG ATGCATGGGA VI59 ATAGGTGCGA GAGCGTCAGT ATTAAGCGAG GGAAAATTAG ATGCATAGGA VI310 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAAAATTAG ATAAGTGGGA SF2 ATGGGTGCGA GAGCGTCGGT ATTAAGCGGG GGAGAATTAG ATAAATGGGA BZ167 ATGGGTGCGA GAGCGTCGGT ATTAAGCGGG GGAGAATTAG ATAGGTGGGA PH153 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGGAAATTAG ATAGATGGGA PH136 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAGAATTAG ACAGATGGGA TB132 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGACAATTAG ATAGATGGAA
GDE: #CPZANT ATGGGAGCGGGGGCGTCTGTTTTGAGGGGAGAGAAGCTAGATACATGGGA AAGTATCAGGCTTCGGCCCGGTGGCAAGAAAAAGTACATGATAAAACATC TGGTTTGGGCAAGATCGGAGCTGCAGCGTTTTGCGCTCAGCTCCTCCCTT CTAGAAACATCAGAAGGTTGTGAAAAGGCTATCCATCAATTGAGCCCTTC CATAGAAATAAGATCCCCTGAAATAATATCTTTGTTTAACACCATTTGTG #U455 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGAAAAAATTAGATTCATGGGA GAAAATTCGGTTAAGGCCAGGGGGAAACAAAAAATATAGACTGAAACATT TAGTATGGGCAAGCAGGGAGCTGGAAAAATTCACACTTAACCCTGGCCTT TTAGAAACAGCAGAAGGATGTCAGCAAATACTGGGACAATTACAACCAGC TCTCCAGACAGGAACAGAAGAACTTAGATCATTATATAATACAGTAGCAG
PHYLIP (Interleaved): 11 1683 I CPZANT ATGGGAGCGG GGGCGTCTGT TTTGAGGGGA GAGAAGCTAG ATACATGGGA U455 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG AAAAAATTAG ATTCATGGGA BZ126B ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAAAATTAG ATGCTTGGGA IBNG ATGGGTGCGA GAGCGTCAGT ATTAAGTGGG GGAAAATTAG ATGCATGGGA VI59 ATAGGTGCGA GAGCGTCAGT ATTAAGCGAG GGAAAATTAG ATGCATAGGA VI310 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAAAATTAG ATAAGTGGGA SF2 ATGGGTGCGA GAGCGTCGGT ATTAAGCGGG GGAGAATTAG ATAAATGGGA BZ167 ATGGGTGCGA GAGCGTCGGT ATTAAGCGGG GGAGAATTAG ATAGGTGGGA PH153 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGGAAATTAG ATAGATGGGA PH136 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGAGAATTAG ACAGATGGGA TB132 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG GGACAATTAG ATAGATGGAA
PHYLIP (Sequential): 11 1683 CPZANT ATGGGAGCGG GGGCGTCTGT TTTGAGGGGA GAGAAGCTAG ATACATGGGA AAGTATCAGG CTTCGGCCCG GTGGCAAGAA AAAGTACATG ATAAAACATC TGGTTTGGGC AAGATCGGAG CTGCAGCGTT TTGCGCTCAG CTCCTCCCTT CTAGAAACAT CAGAAGGTTG TGAAAAGGCT ATCCATCAAT TGAGCCCTTC CATAGAAATA AGATCCCCTG AAATAATATC TTTGTTTAAC ACCATTTGTG TTCTGTGGTG CGTACATAAA GGGGAAAAGA TAAAAGACAC AGAACAAGCC GTTAAAACAG TGAAAATGAA AGTAATGCAG ACACAAGCAG AAACAGGAAG TAGCCAAACC GCAAGCAGAG GCATGCTTCT GCGGCTGCTC CTGTTAAACA AACAGTGGTG TCAGCGACAT CTTAGTGGCG AAGGGAGAAA TTACCCCATC ATAGTGGATG CAGGAGGAAT AGCAAGGCAT CAGCCACTGA CACCAAGAAC CTTAAATGCC TGGGTAAAGT GTGTAGAAGA GAAAAATTTC AATCCAGAAG TCATCCCTAT GTTTTCTGCT TTATCAGAAG GGGCAACTCC TCATGATTTA AACACCATGC TTAATGCAGT TGGGGACCAT CAAGGAGCCA TGCAGGTGCT AAAAGAAGTA ATCAATGAGG AAGCAGCTGA GTGGGATAGG TTACACCCCA CTCATGCAGG ACCAGTACAG GCAGGACAAT TAAGGGAACC AACAGGAAGT GATATAGCAG GGACAACAAG CACAGTGCAG GAGCAGATGC AATGGATGTC AACACCTCAA CAGAATGGAG GAGTCCCAGT AGGGGACATC TATAAGAGAT GGATCATCAT GGGATTAAAT AAGGTGGTCA GGANGTATAG TCCAGTCAGC ATTCTAGAGA TAAAACAAGG ACCAAAAGAG CCCTTCAGAG ATTATGTGGA TAGATTCTAT AAAACAATTA GAGCAGAACA GGCTTCACAG CCTGTGAAAG CCTGGATGAC AGAAACCTTG TTAATCCAAA ATGCCAATCC AGATTGCAAA CACATCCTGA AGGCTTTGGG AACAGGAGCC TCCTTAGAAG AAATGTTAAC AGCTTGTCAA GGAGTAGGAG GCCCAGCCCA TAAGGCAAGA GTGTTGGCAG AAGCTATGGC TTCTGCTAAT AAT---GCAC AG------GG AACCGCA--- GTCTTTCTGC AGAGAGGCAA TGGAAATAGA GGAGGAAAAA GACCTCTCAA ATGTTTTAAC TGCGGTAAAG AGGGCCATAC TGCAAGAAAT TGCAAGGCCC CAAGAAGGAA AGGCTGCTGG AGATGTGGAC AGGAAGGACA CCAGCTTAAA AACTGTCCAG CAACAAATAC AGGAAAAGTA AATTTTTTAG GGAAACCGAC CCCCACGTGG TGGGGGTGCA GACCAGGGAA CTTTGTGCAG AAGGAGGAAG TAGTG----- ---------- ---------- ---------- -GAGCCAACA GCTCCACCCA TAGAG----- ---------- ------ATCT AT-------- -CAGGAGGAG CACAAG---A GGACT----- -------CAG AAGGGTCTCA AGGGGGAG-- ---------- GAGGAACTA- --CCTCCCTC GTATTCCCTG AAATCCCTCT TTGGCAAAGA CCAATGA--- --- U455 ATGGGTGCGA GAGCGTCAGT ATTAAGCGGG AAAAAATTAG ATTCATGGGA GAAAATTCGG TTAAGGCCAG GGGGAAACAA AAAATATAGA CTGAAACATT TAGTATGGGC AAGCAGGGAG CTGGAAAAAT TCACACTTAA CCCTGGCCTT TTAGAAACAG CAGAAGGATG TCAGCAAATA CTGGGACAAT TACAACCAGC TCTCCAGACA GGAACAGAAG AACTTAGATC ATTATATAAT ACAGTAGCAG TCCTCTATTG TGTACATCAA AGGATAGATG TAAAAGACAC CAAGGAAGCT TTAAATAAAA TAGAGGAAAT GCAAAATAAG AACAAGCAAA GG-------- ---------- ACACAGCAGG CAGCAGCT-- ----AACACA ---GGAAGC- ---------- ---------- ---------- --AGTCAAAA TTACCCCATA GTGCAAAATG CACAAGGGCA ACCAGTACAC CAGGCCTTAT CACCTAGGAC CTTGAATGCA TGGGTGAAAG TAGTAGAAGA CAAGGCTTTC AGCCCAGAAG TAATACCCAT GTTTTCAGCA TTATCAGAGG GAGCCACCCC ACAAGATTTA AATATGATGC TGAATGTAGT GGGGGGACAC CAGGCAGCTA TGCAAATGTT AAAAGATACC ATCAATGAGG AAGCTGCAGA GTGGGACAGG TTACATCCAG TGCATGCAGG GCCTATTCCA CCAGGCCAGA TGAGAGAACC AAGGGGAAGT GACATAGCAG GAACTACTAG CACCGTTCAA GAACAAATAG GATGGATGAC AGGC------ ---AATCCAC CTATCCCAGT GGGAGACATC TATAGAAGAT GGATAATCCT GGGATTAAAT AAAATAGTAA GAATGTATAG CCCTGTTAGC ATTTTGGACA TAAGACAAGG GCCAAAAGAA CCCTTCAGGG ATTATGTAGA TAGATTCTTT AAAACTCTCA GAGCTGAGCA AGCTACACAG GATGTAAAAA ACTGGATGAC AGAAACCTTG CTGGTCCAAA ATGCGAATCC AGACTGTAAG TCCATTTTAA GAGCATTAGG GCCAGGGGCT ACATTAGAAG AAATGATGAC AGCATGCCAG GGAGTGGGAG GACCCGGCCA TAAAGCAAGG GTTTTGGCTG AGGCAATGAG TCAAGTA--- ------CAAC AG---ACAAG C--------- ATAATGATGC AGAGAGGCAA TTTT---AGG GGCCCGAGAA GA---ATTAA GTGTTTCAAC TGTGGCAAAG AAGGACACCT AGCCAAAAAT TGTAGGGCCC CTAGGAAAAA GGGCTGTTGG AAATGCGGGA AAGAAGGACA CCAAATGAAA GACTGCACT- -----GAG-- -AGACAGGCT AATTTTTTAG GGAAAATTTG GCCTTCCAAC AAGGGG---A GGCCAGGGAA TTTTCCTCAG AGCAGACCA- ---------- ---------- ---------- ---------- -GAGCCAACA GCCCCACCAG CAGAA----- ---------- ------ATCT TT---GGGAT GGGGGAAAAG ATGACC---T CCCCT----- -------GCG AAACAGGAGC TGAAAGAC-- ---------- AGGGAACAGA CT---CCTTT AGTTTCCCTC AAATCACTCT TTGGCAACGA CCCCTTGTCA CAG
SLX: #=RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx DH123 .TGGAAGGGCTAATTTACTCCCAGAAAAGACAAGAtATCCTTGACCTGTG B-MANC .................................................. B-HAN .TGGAAGGGTTAATTTACTCCCCAAAAAGACAAGAgATCCTTGATCTGTG B-OYI .TGGAAGGGCTAATTTACTCCCAGAAAAGACAAGAtATTCTTGATCTGTG B-AUMBCC54 .TGGAAGGGCTAATACGCTCCCAAAGAAGACAAGAtATCCTTGATCTGTG F-93BR020 .TGGAAGGGTTAATTTACTCCAAGAGAAGACAAGAgATCCTTGATCTGTG BF-93BR029 .TGGAAGGGTTAATTTATTCCAAGAAAAGACAAGAgATCCTTGATCTGTG D-94UG114 .TGGAAGGGTTAGTTTGGTCCCCGAAAAGACAAGAgATCCTTGATCTTTG B-WR27 .TGGAAGGGCTAATTTACTCCCAGAAAAGACAAGAtATCCTTGATCTGTG D-ELI .TGGAAGGGCTAATTTGGTCCAAAAAGAGACAAGAgATCCTTGATCTTTG D-NDK .TGGAAGGGCTAATTTGGTCCAAGAAAAGACAAGAgATCCTTGATCTTTG B-LAI .TGGAAGGGCTAATTCACTCCCAACGAAGACAAGAtATCCTTGATCTGTG B-BCSG3 .TGGAAGGGCTAATTTTCTCCCAAAGAAGACAAGAtATCCTTGATCTGTG B-D31 .TGGAAGGGCTAGTTCACTCCCAAAAAAGACAAGAcATCCTTGACCTGTG B-RF .TGGATGGGCTAGTGTTCTCCCAGAAAAGACAAGAtATCCTTGATCTGTG B-JRFL .TGGAAGGGCTAATTCACTCACAGAAAAGACAAGAtATCCTTGATCTGTG D-84ZR085 .TGGAAGGGCTAGTTTACTCCCAGAAAAGACAAGAtATCCTTGATCTTTG B-HIVMN .TGGATGGGTTAATTTACTCCCAAAAGAGACAAGAcATCCTTGATCTGTG |