Community Resources |
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Community resources are shared via the Daphnia Genomics Consortium (DGC) (http://daphnia.cgb.indiana.edu/) website and the DGC collaboration Wiki (https://dgc.cgb.indiana.edu/display/DGC/Home ) |
Genomic Resources |
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Daphnia genome data can be explored and downloaded from |
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BAC & Fosmid Libraries |
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Clones from large insert genomic DNA libraries are archived at the Hubbard Center for Genome Studies, University of New Hampshire |
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Contact W. Kelley Thomas, PhD |
cDNA Libraries |
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Thirty seven cDNA libraries created from animals challenged by diverse ecological conditions and containing over 200,000 arrayed cDNA clones are archived at The Center for Genomics and Bioinformatics, Indiana University (https://dgc.cgb.indiana.edu/display/DGC/cDNA+Libraries) |
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Contact John Colbourne, PhD |
Microarrays |
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Four types of microarrays are in production or available at the Center for Genomics and Bioinformatics, Indiana University |
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- Spotted Oligo Expression Arrays
- Whole-Genome Tiling Arrays
- Ultra-Dense Multi-Plex Expression Arrays
- Multi-Plex Genotyping Arrays
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Contact John Colbourne, PhD |
Bioinformatic Data |
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Gene Ontologies, KEGG, KOG annotations |
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Unigene Clusters |
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EST Resources |
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Genetic Maps |
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Contact Don Gilbert, PhD |
QTL Resources |
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Recombinant Mapped Lines |
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Contact Michael Pfrender, PhD |
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QTL Database |
Other
Resources |
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Protocols for Daphnia including culture and genomic studies |
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Daphnia Stock Collection |
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Contact Jeff Dudycha, PhD |