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Volume 5(2);  February 2009
Perspective
When Segregation Hangs by a Thread
Giovanni Bosco
PLoS Genet. 2009 February; 5(2): e1000371. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000371.
PMCID: PMC2631148
Conservation and Convergence of Colour Genetics: MC1R Mutations in brown Cavefish
Nicholas I. Mundy
PLoS Genet. 2009 February; 5(2): e1000388. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000388.
PMCID: PMC2638015
Review
Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers
Johanna Jakobsdottir, Michael B. Gorin, Yvette P. Conley, Robert E. Ferrell, and Daniel E. Weeks
PLoS Genet. 2009 February; 5(2): e1000337. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000337.
PMCID: PMC2629574
Research Articles
Deletion of the Mitochondrial Superoxide Dismutase sod-2 Extends Lifespan in Caenorhabditis elegans
Jeremy M. Van Raamsdonk and Siegfried Hekimi
PLoS Genet. 2009 February; 5(2): e1000361. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000361.
PMCID: PMC2628729
Adaptations to Submarine Hydrothermal Environments Exemplified by the Genome of Nautilia profundicola
Barbara J. Campbell, Julie L. Smith, Thomas E. Hanson, Martin G. Klotz, Lisa Y. Stein, Charles K. Lee, Dongying Wu, Jeffrey M. Robinson, Hoda M. Khouri, Jonathan A. Eisen, and S. Craig Cary
PLoS Genet. 2009 February; 5(2): e1000362. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000362.
PMCID: PMC2628731
hnRNP I Inhibits Notch Signaling and Regulates Intestinal Epithelial Homeostasis in the Zebrafish
Jing Yang, Chin Yee Chan, Bo Jiang, Xueyuan Yu, Guo-Zhang Zhu, Yiping Chen, John Barnard, and Wenyan Mei
PLoS Genet. 2009 February; 5(2): e1000363. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000363.
PMCID: PMC2629577
Genome-Wide Analysis of Factors Affecting Transcription Elongation and DNA Repair: A New Role for PAF and Ccr4-Not in Transcription-Coupled Repair
Hélène Gaillard, Cristina Tous, Javier Botet, Cristina González-Aguilera, Maria José Quintero, Laia Viladevall, María L. García-Rubio, Alfonso Rodríguez-Gil, Antonio Marín, Joaquín Ariño, José Luis Revuelta, Sebastián Chávez, and Andrés Aguilera
PLoS Genet. 2009 February; 5(2): e1000364. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000364.
PMCID: PMC2629578
Genome-Wide Association Studies in an Isolated Founder Population from the Pacific Island of Kosrae
Jennifer K. Lowe, Julian B. Maller, Itsik Pe'er, Benjamin M. Neale, Jacqueline Salit, Eimear E. Kenny, Jessica L. Shea, Ralph Burkhardt, J. Gustav Smith, Weizhen Ji, Martha Noel, Jia Nee Foo, Maude L. Blundell, Vita Skilling, Laura Garcia, Marcia L. Sullivan, Heather E. Lee, Anna Labek, Hope Ferdowsian, Steven B. Auerbach, Richard P. Lifton, Christopher Newton-Cheh, Jan L. Breslow, Markus Stoffel, Mark J. Daly, David M. Altshuler, and Jeffrey M. Friedman
PLoS Genet. 2009 February; 5(2): e1000365. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000365.
PMCID: PMC2628735
A Gene-Based Linkage Map for Bicyclus anynana Butterflies Allows for a Comprehensive Analysis of Synteny with the Lepidopteran Reference Genome
Patrícia Beldade, Suzanne V. Saenko, Nicolien Pul, and Anthony D. Long
PLoS Genet. 2009 February; 5(2): e1000366. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000366.
PMCID: PMC2629579
Genetic Mechanisms in Apc-Mediated Mammary Tumorigenesis
Mari Kuraguchi, Nana Yaw Ohene-Baah, Dmitriy Sonkin, Roderick Terry Bronson, and Raju Kucherlapati
PLoS Genet. 2009 February; 5(2): e1000367. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000367.
PMCID: PMC2629572
Adaptive Mutations in the JC Virus Protein Capsid Are Associated with Progressive Multifocal Leukoencephalopathy (PML)
Shamil R. Sunyaev, Alexey Lugovskoy, Kenneth Simon, and Leonid Gorelik
PLoS Genet. 2009 February; 5(2): e1000368. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000368.
PMCID: PMC2629573
Expression of the Multiple Sclerosis-Associated MHC Class II Allele HLA-DRB1*1501 Is Regulated by Vitamin D
Sreeram V. Ramagopalan, Narelle J. Maugeri, Lahiru Handunnetthi, Matthew R. Lincoln, Sarah-Michelle Orton, David A. Dyment, Gabriele C. DeLuca, Blanca M. Herrera, Michael J. Chao, A. Dessa Sadovnick, George C. Ebers, and Julian C. Knight
PLoS Genet. 2009 February; 5(2): e1000369. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000369.
PMCID: PMC2627899
Loss of Myotubularin Function Results in T-Tubule Disorganization in Zebrafish and Human Myotubular Myopathy
James J. Dowling, Andrew P. Vreede, Sean E. Low, Elizabeth M. Gibbs, John Y. Kuwada, Carsten G. Bonnemann, and Eva L. Feldman
PLoS Genet. 2009 February; 5(2): e1000372. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000372.
PMCID: PMC2631153
A Genome-Wide Investigation of SNPs and CNVs in Schizophrenia
Anna C. Need, Dongliang Ge, Michael E. Weale, Jessica Maia, Sheng Feng, Erin L. Heinzen, Kevin V. Shianna, Woohyun Yoon, Dalia Kasperavičiūtė, Massimo Gennarelli, Warren J. Strittmatter, Cristian Bonvicini, Giuseppe Rossi, Karu Jayathilake, Philip A. Cola, Joseph P. McEvoy, Richard S. E. Keefe, Elizabeth M. C. Fisher, Pamela L. St. Jean, Ina Giegling, Annette M. Hartmann, Hans-Jürgen Möller, Andreas Ruppert, Gillian Fraser, Caroline Crombie, Lefkos T. Middleton, David St. Clair, Allen D. Roses, Pierandrea Muglia, Clyde Francks, Dan Rujescu, Herbert Y. Meltzer, and David B. Goldstein
PLoS Genet. 2009 February; 5(2): e1000373. Published online 2009 February 6. doi: 10.1371/journal.pgen.1000373.
PMCID: PMC2631150
A Drosophila Model for EGFR-Ras and PI3K-Dependent Human Glioma
Renee D. Read, Webster K. Cavenee, Frank B. Furnari, and John B. Thomas
PLoS Genet. 2009 February; 5(2): e1000374. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000374.
PMCID: PMC2636203
The Individual Blood Cell Telomere Attrition Rate Is Telomere Length Dependent
Katarina Nordfjäll, Ulrika Svenson, Karl-Fredrik Norrback, Rolf Adolfsson, Per Lenner, and Göran Roos
PLoS Genet. 2009 February; 5(2): e1000375. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000375.
PMCID: PMC2633043
Attenuation of Zinc Finger Nuclease Toxicity by Small-Molecule Regulation of Protein Levels
Shondra M. Pruett-Miller, David W. Reading, Shaina N. Porter, and Matthew H. Porteus
PLoS Genet. 2009 February; 5(2): e1000376. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000376.
PMCID: PMC2633050
Accumulation of Rhodopsin in Late Endosomes Triggers Photoreceptor Cell Degeneration
Yashodhan Chinchore, Amitavo Mitra, and Patrick J. Dolph
PLoS Genet. 2009 February; 5(2): e1000377. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000377.
PMCID: PMC2633617
Identification of a Shared Genetic Susceptibility Locus for Coronary Heart Disease and Periodontitis
Arne S. Schaefer, Gesa M. Richter, Birte Groessner-Schreiber, Barbara Noack, Michael Nothnagel, Nour-Eddine El Mokhtari, Bruno G. Loos, Søren Jepsen, and Stefan Schreiber
PLoS Genet. 2009 February; 5(2): e1000378. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000378.
PMCID: PMC2632758
Steroid Hormone Control of Cell Death and Cell Survival: Molecular Insights Using RNAi
Suganthi Chittaranjan, Melissa McConechy, Ying-Chen Claire Hou, J. Douglas Freeman, Lindsay DeVorkin, and Sharon M. Gorski
PLoS Genet. 2009 February; 5(2): e1000379. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000379.
PMCID: PMC2632862
ERCC1/XPF Protects Short Telomeres from Homologous Recombination in Arabidopsis thaliana
Jean-Baptiste Vannier, Annie Depeiges, Charles White, and Maria Eugenia Gallego
PLoS Genet. 2009 February; 5(2): e1000380. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000380.
PMCID: PMC2632759
Sporadic Infantile Epileptic Encephalopathy Caused by Mutations in PCDH19 Resembles Dravet Syndrome but Mainly Affects Females
Christel Depienne, Delphine Bouteiller, Boris Keren, Emmanuel Cheuret, Karine Poirier, Oriane Trouillard, Baya Benyahia, Chloé Quelin, Wassila Carpentier, Sophie Julia, Alexandra Afenjar, Agnès Gautier, François Rivier, Sophie Meyer, Patrick Berquin, Marie Hélias, Isabelle Py, Serge Rivera, Nadia Bahi-Buisson, Isabelle Gourfinkel-An, Cécile Cazeneuve, Merle Ruberg, Alexis Brice, Rima Nabbout, and Eric LeGuern
PLoS Genet. 2009 February; 5(2): e1000381. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000381.
PMCID: PMC2633044
Disease-Associated Mutant Ubiquitin Causes Proteasomal Impairment and Enhances the Toxicity of Protein Aggregates
Elizabeth M. H. Tank and Heather L. True
PLoS Genet. 2009 February; 5(2): e1000382. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000382.
PMCID: PMC2633047
HECTD2 Is Associated with Susceptibility to Mouse and Human Prion Disease
Sarah E. Lloyd, Emma G. Maytham, Hirva Pota, Julia Grizenkova, Eleni Molou, James Uphill, Holger Hummerich, Jerome Whitfield, Michael P. Alpers, Simon Mead, and John Collinge
PLoS Genet. 2009 February; 5(2): e1000383. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000383.
PMCID: PMC2633041
A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic
Bo Eskerod Madsen and Sharon R. Browning
PLoS Genet. 2009 February; 5(2): e1000384. Published online 2009 February 13. doi: 10.1371/journal.pgen.1000384.
PMCID: PMC2633048
Ploidy Reductions in Murine Fusion-Derived Hepatocytes
Andrew W. Duncan, Raymond D. Hickey, Nicole K. Paulk, Andrew J. Culberson, Susan B. Olson, Milton J. Finegold, and Markus Grompe
PLoS Genet. 2009 February; 5(2): e1000385. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000385.
PMCID: PMC2636893
The Pattern of R2 Retrotransposon Activity in Natural Populations of Drosophila simulans Reflects the Dynamic Nature of the rDNA Locus
Jun Zhou and Thomas H. Eickbush
PLoS Genet. 2009 February; 5(2): e1000386. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000386.
PMCID: PMC2637433
Poly (ADP-Ribose) Polymerase 1 Is Required for Protein Localization to Cajal Body
Elena Kotova, Michael Jarnik, and Alexei V. Tulin
PLoS Genet. 2009 February; 5(2): e1000387. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000387.
PMCID: PMC2637609
Altered Hematopoiesis in Mice Lacking DNA Polymerase μ Is Due to Inefficient Double-Strand Break Repair
Daniel Lucas, Beatriz Escudero, José Manuel Ligos, Jose Carlos Segovia, Juan Camilo Estrada, Gloria Terrados, Luis Blanco, Enrique Samper, and Antonio Bernad
PLoS Genet. 2009 February; 5(2): e1000389. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000389.
PMCID: PMC2638008
Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
Joseph A. Ross, James R. Urton, Jessica Boland, Michael D. Shapiro, and Catherine L. Peichel
PLoS Genet. 2009 February; 5(2): e1000391. Published online 2009 February 20. doi: 10.1371/journal.pgen.1000391.
PMCID: PMC2638011
Gene Dosage Effects of the Imprinted Delta-Like Homologue 1 (Dlk1/Pref1) in Development: Implications for the Evolution of Imprinting
Simao Teixeira da Rocha, Marika Charalambous, Shau-Ping Lin, Isabel Gutteridge, Yoko Ito, Dionne Gray, Wendy Dean, and Anne C. Ferguson-Smith
PLoS Genet. 2009 February; 5(2): e1000392. Published online 2009 February 27. doi: 10.1371/journal.pgen.1000392.
PMCID: PMC2640098
Mutation of the Mouse Syce1 Gene Disrupts Synapsis and Suggests a Link between Synaptonemal Complex Structural Components and DNA Repair
Ewelina Bolcun-Filas, Robert Speed, Mary Taggart, Corinne Grey, Bernard de Massy, Ricardo Benavente, and Howard J. Cooke
PLoS Genet. 2009 February; 5(2): e1000393. Published online 2009 February 27. doi: 10.1371/journal.pgen.1000393.
PMCID: PMC2640461
The D4Z4 Macrosatellite Repeat Acts as a CTCF and A-Type Lamins-Dependent Insulator in Facio-Scapulo-Humeral Dystrophy
Alexandre Ottaviani, Sylvie Rival-Gervier, Amina Boussouar, Andrea M. Foerster, Delphine Rondier, Sabrina Sacconi, Claude Desnuelle, Eric Gilson, and Frédérique Magdinier
PLoS Genet. 2009 February; 5(2): e1000394. Published online 2009 February 27. doi: 10.1371/journal.pgen.1000394.
PMCID: PMC2639723
Chordin Is a Modifier of Tbx1 for the Craniofacial Malformations of 22q11 Deletion Syndrome Phenotypes in Mouse
Murim Choi and John Klingensmith
PLoS Genet. 2009 February; 5(2): e1000395. Published online 2009 February 27. doi: 10.1371/journal.pgen.1000395.
PMCID: PMC2640462
A Systems Approach Reveals Regulatory Circuitry for Arabidopsis Trichome Initiation by the GL3 and GL1 Selectors
Kengo Morohashi and Erich Grotewold
PLoS Genet. 2009 February; 5(2): e1000396. Published online 2009 February 27. doi: 10.1371/journal.pgen.1000396.
PMCID: PMC2642726
Corrections
Correction: A Genetic Screen for Dihydropyridine (DHP)-Resistant Worms Reveals New Residues Required for DHP-Blockage of Mammalian Calcium Channels
Trevor C. Y. Kwok, Kwokyin Hui, Wojciech Kostelecki, Nicole Ricker, Guillermo Selman, Zhong-Ping Feng, and Peter John Roy
PLoS Genet. 2009 February; 5(2): 10.1371/annotation/c38f7645-c9d8-4371-b363-5a9099c75e83. Published online 2009 February 24. doi: 10.1371/annotation/c38f7645-c9d8-4371-b363-5a9099c75e83.
PMCID: PMC2665012
Corrects: Trevor C. Y. Kwok, et al. A Genetic Screen for Dihydropyridine (DHP)-Resistant Worms Reveals New Residues Required for DHP-Blockage of Mammalian Calcium Channels. PLoS Genet. 2008 May; 4(5): e1000067.
Correction: A Position Effect on the Heritability of Epigenetic Silencing
Jaswinder Singh, Michael Freeling, and Damon Lisch
PLoS Genet. 2009 February; 5(2): 10.1371/annotation/dd58c52f-161d-4a3f-b560-c9fd78307f85. Published online 2009 February 13. doi: 10.1371/annotation/dd58c52f-161d-4a3f-b560-c9fd78307f85.
PMCID: PMC2665015
Corrects: Jaswinder Singh, et al. A Position Effect on the Heritability of Epigenetic Silencing. PLoS Genet. 2008 October; 4(10): e1000216.
Correction: LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin
Anderly C. Chueh, Emma L. Northrop, Kate H. Brettingham-Moore, K. H. Andy Choo, and Lee H. Wong
PLoS Genet. 2009 February; 5(2): 10.1371/annotation/3b497aec-b7d3-442e-9086-751251f649dd. Published online 2009 February 12. doi: 10.1371/annotation/3b497aec-b7d3-442e-9086-751251f649dd.
PMCID: PMC2665016
Corrects: Anderly C. Chueh, et al. LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin. PLoS Genet. 2009 January; 5(1): e1000354.
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