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| Year 2005 |
| Fontelo P, Nahin A, Liu F, Kim G, Ackerman MJ. Accessing MEDLINE/PubMed with Handheld Devices: Developments and New Search Portals . Proc. of the 38th Hawaii International Conference on System Sciences. 2005;:1-5. |
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| Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson L. A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications. Proceedings of AMIA Symposium 2005: 21-5. |
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| Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY. A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications. Proc. AMIA 2005: 21-25 |
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| Zhang S, Bodenreider O. Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference. Proceedings of AMIA Annual Symposium 2005:864-868. |
| (Abstract) (PDF)
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| Wang H, Azuaje F, Bodenreider O. An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. Proceedings of the 18th IEEE International Symposium on Computer-Based Medical Systems 2005:389-394. |
| (Abstract) (PDF)
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| Bergun A, Bodenreider O. An ontology of chemical entities helps identify dependence relations among Gene Ontology terms. Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM-2005) 2005. |
| (Abstract) (PDF)
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| Antani SK, Long RL, Thoma GR. Applying Vertebral Boundary Semantics to CBIR of Digitized Spine X-Ray Images . Proceedings SPIE Electronic Imaging Science and Technology, Conference on Storage and Retrieval Methods and Applications for Multimedia. 2005;5682:98-107. |
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| Mougin F, Bodenreider O. Approaches to Eliminating Cycles in the UMLS Metathesaurus: Naive vs. Formal. Proceedings of AMIA Annual Symposium 2005:550-554. |
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| Tulpule B, Hernes DL, Srinivasan Y, Mitra S, Sriraja Y, Nutter BS, Phillips B, Long RL, Ferris DG. A Probabilistic Approach to Segmentation and Classification of Neoplasia in Uterine Cervix Images Using Color and Geometric Features . SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:995-1003. |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Ackerman MJ. askMEDLINE: A Free-Text, Natural Language Query Tool for MEDLINE/PubMed . BMC Medical Informatics and Decision Making. 2005. 5;5:1-14. |
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| Siegel ER, Wood FB, Dutcher GA, Ruffin A, Logan RA, Scott J. Assessment of the National Library of Medicine's Health Disparities Plan: A Focus on Native American Outreach. Journal of the Medical Library Association. 93:4 (October 2005): 10-20 |
| (Abstract) (PDF)
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| Zeng Q, Kin E, Crowell J, Tse T. A Text Corpora-Based Estimation of the Familiarity of Health Terminology. VI International Symposium on Biological and Medical Data Analysis (ISBMDA), Aveiro, Portugal, 10-11 November 2005:184-92. |
| (Abstract) (PDF)
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| Kim I, Le DX, Thoma GR. Automated Cleanup Processing for Extracting Bibliographic Data from Biomedical Online Journals. In: Callaos N, Lesso W, editors. SCI 2005. Proc. 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 4; Orlando (FL): International Institute of Informatics and Systemics; c2005. 401-5. |
| (Abstract) (PDF)
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| Kim J, Le DX, Thoma GR. Automated Labeling Of Biomedical Online Journal Articles. In: Callaos N, Lesso W, editors. SCI 2005. Proc. 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 4; Orlando (FL): International Institute of Informatics and Systemics; c2005. 406-11 |
| (Abstract) (PDF)
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| Thoma GR, Mao S, Misra D. Automated Metadata Extraction to Preserve the Digital Contents of Biomedical Collections . Proc. 5th IASTED International Conference on Visualization, Imaging and Image Processing (VIIP 2005). September 2005. Benidorm, Spain; 214-19 |
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| Le DX, Thoma GR. Automatically Creating Biomedical Bibliographic Records from Printed Volumes of Old Indexe. In: Callaos N, Lesso W, editors. SCI 2005. Proc. 9th World Multiconference on Systemics, Cybernetics and Informatics; 2005 Jul 10-13; Vol. 3, Computer Science and Engineering. Orlando (FL): International Institute of Informatics and Systemics; c2005. 267-74 |
| (Abstract) (PDF)
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| Crowell J, Zeng QT, Tse T. A Web Application to Support Consumer Health Vocabulary Development. Proceedings of AMIA Symposium Poster 2005: 932. |
| (Abstract) (PDF)
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| Bodenreider O, Burgun A. Biomedical Ontologies. In: Chen H, Fuller S, Jersh WR, Friedman C, editors. Medical Informatics: Advances in Knowledge Management and Data Mining in Biomedicine: Springer-Verlag; 2005. p. 211-236. |
| (Abstract) (PDF)
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| Bergun A, Bodenreider O, Mougin F. Classifying diseases with respect to anatomy: a study in SNOMED CT. Proceedings of AMIA Annual Symposium 2005:91-95. |
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| Ackerman MJ. Computer Briefs: Practicing Safe Computing. J. Med. Pract. Manag., 20(6):303-304, 2005 |
| (Abstract) (PDF)
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| Ackerman MJ. Computer Briefs: Spyware and Adware. J. Med. Pract. Manag., 20(4):183-184, 2005 |
| (Abstract) (PDF)
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| Ekong D, Fontelo P, Ackerman MJ. Computer Network for Health Care Organizations in Low-Resource Environments. Telemed and e-Health, 11(2):245, 2005 |
| (Abstract) (PDF)
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| Herman TD, Liu F, Sagaram D, Raoul K, Fontelo P, Kohl K, Payne D. Creating a Vaccine Adverse Event Ontology for Public Health. AMIA Annu Symp Proc. 2005;978 |
| (Abstract) (PDF)
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| Lee D, Antani SK, Xu X, Long LR. Design and Evaluation of a Curve Matching-based Spine X-ray Image Retrieval System . SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:365-373. |
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| Mao S, Misra D, Seamans J, Thoma GR. Design Strategies for a Prototype Electronic Preservation System for Biomedical Documents . IS&T Archiving 2005 Conference, April 2005; 48-53. |
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| Bernhardt PJ, Humphrey SM, Rindflesch TC. Determining Prominent Subdomains in Medicine . Proceedings of the AMIA Annual Symposium. 2005;:46-50. |
| (Abstract) (PDF)
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| Antani SK, Natarajan M, Long JL, Long RL, Thoma GR. Developing a Comprehensive System for Content-based Image Retrieval of Image and Text from a National Survey . SPIE Medical Imaging, February 2005; San Diego, CA; vol. 5748:152-161. |
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| Leroy G, Rindflesch TC. Effects of Information and Machine Learning Algorithms on Word Sense Disambiguation with Small Datasets . International Journal of Medical Informatics. 2005 Aug;74(7-8):573-85. |
| (Abstract) (PDF)
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| Beaudoin DE, Rocha RA, Tse T. Enhancing Access to Patient Education Information: A Pilot Usability Study. Proceedings of AMIA Symposium Poster 2005:892. |
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| Neveol A, Mork JG, Aronson AR, Darmoni SJ. Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. AMIA Annu Symp Proc. 2005;:565-9 |
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| Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ. Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. Proc TREC 2005, 36-45 |
| (Abstract) (PDF)
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| Cantor MN, Sarkar INK, Bodenreider O, Lussier YA. GenesTrace: Phenomic Knowledge Discovery Via Structured Terminologies . Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:103-114. |
| (Abstract) (PDF)
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| Zeng QT, Tse T, Crowell J, Divita G, Roth L, Browne AC. Identifying Consumer-Friendly Display (CFD) Names for Health Concepts. Proceedings of AMIA Symposium 2005: 859-63. |
| (Abstract) (PDF)
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| Long R, Antani SK, Thoma GR. Image Informatics at a National Research Center . Computerized Medical Imaging and Graphics, 2005. 29:171-193. |
| (Abstract) (PDF)
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| Long RL, Antani SK, Thoma GR. Image Informatics At A National Research Center . Computerized Medical Imaging and Graphics. 2005; 29 (2-3): 171-193. |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O, Nelson SJ. Implementing RxNav, a RxNorm Browser. Proceedings of Medical Informatics Europe 2005 (CD-ROM) 2005:1268. |
| (Abstract) (PDF)
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| Bergun A, Bodenreider O, Jacquelinet C. Issues in the Classification of Disease Instances with Ontologies. Stud Health Technol Inform 2005;116:695-700. |
| (Abstract) (PDF)
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| Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C. Knowledge Integration for Bio-Threat Response. Los Alamos White Paper |
| (Abstract) (PDF)
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| Bodenreider O, Burgun A. Linking the Gene Ontology to other biological ontologies. Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18. |
| (Abstract) (PDF)
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| Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchex VR. Medical Facts to Support Inferencing in Natural Language Processing . Proceedings of the AMIA Annual Symposium. 2005;:634-38. |
| (Abstract) (PDF)
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| Smith L, Rindflesch TC, Wilbure WJ. MedPost: A Part of Speech Tagger for BioMedical Text . Bioinformatics. 2004 Sep 22;20(14):2320-1. |
| (Abstract) (PDF)
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| Smith L, Rindflesch TC, Wilbure WJ. MedTag: A Collection of Biomedical Annotations . Bioinformatics. 2004 Sep 22;20(14):2320-1. |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Ackerman MJ. MeSH Speller + askMEDLINE: Auto-completes MeSH Terms Then Searches MEDLINE/PubMed via Free-text, Natural Language Queries. Proc. AMIA 2005, American Medical Informatics Association, Bethesda, MD, pg. 957, 2005. |
| (Abstract) (PDF)
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| Golbreich C, Zhang S, Bodenreider O. Migrating the FMA from Protege to OWL. Proceedings of the Eighth International Protege Conference 2005:108-111. |
| (Abstract) (PDF)
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| Lord AM. Naturally Clean and Wholesome; Women, Sex Education and the United States Public Health Service, 1918-1928.. 2005:;1-34. |
| (Abstract) (PDF)
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| Bodenreider O, Aubry M, Burgun A. Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology . Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:91-102. |
| (Abstract) (PDF)
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| Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S. Of Mice and Men: Aligning Mouse and Human Anatomies. Proceedings of AMIA Annual Symposium 2005:61-65. |
| (Abstract) (PDF)
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| Azuaje F, Wang H, Bodenreider O. Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment. Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10. |
| (Abstract) (PDF)
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| Yoo, TS, Ackerman MJ. Open Source Software for Medical Image Processing and Visualization. Communications of the ACM, 48(2):55-59, Feb. 2005 |
| (Abstract) (PDF)
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| Sutton VR, Hauser SE. Preliminary comparison of the SEER and PubMed search engines for answering clinical questions using PubMed on Tap, a PDA-based program for accessing biomedical literature. Proceedings of AMIA Annual Symposium, October 22-26, 2005, Washington, D.C. |
| (Abstract) (PDF)
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| m GR, Zambrowicz C, Zhang D, Fontelo P, Abbott PA. Promoting the Usability of Online AMIA Symposium Proceedings. AMIA Annu Symp Proc. 2005;1008 |
| (Abstract) (PDF)
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| Thoma GR. Public Access to Anatomic Images . Chapter in: Medical Informatics: Knowledge Management and Data Mining in Biomedicine |
| (Abstract) (PDF)
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| Muin M, Fontelo P, Ackerman MJ. PubMed informer: Monitoring MEDLINE/PubMed Through E-mail Alerts, SMS, PDA Downloads and RSS Feeds. Proc. AMIA 2005, American Medical Informatics Association, Bethesda, MD, pg. 1057, 2005 |
| (Abstract) (PDF)
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| Xu X, Lee DJ, Antani S, Long LR. Relevance Feedback for Spine X-ray Retrieval . 18th International Symposium on Computer-Based Medical Systems, 2005. Dublin, Ireland; pp. 197-202 |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O, Nelson SJ. RxNav: A Progress Report. Proceedings of AMIA Annual Symposium 2005:1168. |
| (Abstract) (PDF)
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| Sneiderman C, Demner-Fushman D, Fiszman M, Rindflesch TC. Semantic Characteristics of MEDLINE Citations Useful for Therapeutic Decision-making . Proceedings of AMIA Annual Symposium, 2005;:1117. |
| (Abstract) (PDF)
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| Rindflesch TC, Fiszman M, Bisharah L. Semantic Interpretation for the Biomedical Research Literature . In Hsinchun C, Fuller S, Friedman C, Hersh w (eds.) Medical Informatics: Knowledge Management and Data Mining in Biomedicine. Springer: New York, pp. 399-422, 2005. |
| (Abstract) (PDF)
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| Slaughter LA, Soergel D, Rindflesch TC. Semantic Representation of Consumer Questions and Physician Answers . International Journal of Medical Informatics. August 23, 2005. |
| (Abstract) (PDF)
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| Gay CW, Kayaalp M, Aronson AR. Semi-Automatic Indexing of Full Text Biomedical Articles. AMIA Annu Symp Proc. 2005;:271-5 |
| (Abstract) (PDF)
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| Muin M, Fontelo P, Hameed K, Liu F, Ackerman MJ. SLIM: An Alternative Web Interface for MEDLINE/PubMed Searches - a Preliminary Study. BMC Med Inform Decis Mak. 2005 Dec 1:5:37. |
| (Abstract) (PDF)
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| Rosemblat G, Tse T, Gemoets D, Gillen JE, Ide NC. Supporting Access to Consumer Health Information Across Languages. Proceedings of the 9th World Congress on Health Information and Libraries (ICML-9), September 20-23, 2005; Salvador, Bahia, Brazil. |
| (Abstract) (PDF)
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| Golbreich C, Zhang S, Bodenreider O. The Foundational Model of Anatomy in OWL: experience and perspectives. Proceedings of the Workshop on OWL: Experiences and Directions 2005. |
| (Abstract) (PDF)
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| Smith LH, Rindflesch TC, Wilbur WJ. The Importance of the Lexicon in Tagging Biological Text . Natural Language Engineering 2005. |
| (Abstract) (PDF)
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| Wood FB, Siegel ER, Dutcher GA, Ruffin A, Logan RA. The National Library of Medicine's Native American Outreach Portfolio: A Descriptive Overview. Journal of the Medical Library Association. 93:4 (October 2005): 21-34 |
| (Abstract) (PDF)
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| Demner-Fushman D, Hauser SE, Thoma GR. The Role of Title, Metadata and Abstract in Identifying Clinically Relevant Journal Articles. Proceedings of AMIA Annual Symposium, October 22-26, 2005, Washington, D.C. |
| (Abstract) (PDF)
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| Zarin DA, Tse T, Ide NC. Trial Registration at ClinicalTrials.gov between May and October 2005. New England Journal of Medicine 2005 December 29,353(26):2779-87. |
| (Abstract) (PDF)
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| Mao S, Nie L, Thoma GR. Unsupervised Style Classification of Document Page Images. Proc. IEEE International Conference on Image Processing, September 2005, Genova, Italy; Vol. II: 510-13 |
| (Abstract) (PDF)
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| Fung KW, Bodenreider O. Utilizing the UMLS for Semantic Mapping between Terminologies. Proceedings of AMIA Annual Symposium 2005:266-270. |
| (Abstract) (PDF)
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| Liu F, Fontelo P, Muin M, Ackerman MJ. Virtual Evidence Cart - RP (VEC-RP). Proc. AMIA 2005, American Medical Informatics Association, Bethesda, MD, pg. 1034, 2005. |
| (Abstract) (PDF)
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| Fontelo P, DiNino E, Johansen K, Khan A, Ackerman MJ. Virtual Microscopy: Potential Applications in Medical Education and Telemedicine in Countries with Developing Economies. Proc. of the 38th Hawaii International Conference on System Sciences. 2005;:1-5. |
| (Abstract) (PDF)
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| Kayaalp M. Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data?. Proc AMIA Symposium 2005 |
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