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Year 2008 | Back to top |
A Balanced Approach to Health Information Evaluation: A Vocabulary-based Naive Bayes Classifier and Readability Formulas |
Leroy G, Miller T, Rosemblat G, Browne A
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In Journal of the American Society for Information Science and Technology (JASIST), 59(9):1409-1419, 2008 |
(Abstract) |
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Accessing and Integrating Data and Knowledge for Biomedical Research |
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Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):91-99 |
(Abstract) (PDF)
(PMID: 18660883
) |
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A Framework for Characterizing Drug Information Sources |
Sharp M, Bodenreider O, Wacholder N
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AMIA Annu Symp Proc 2008:662-666 |
(Abstract) (PMID: 18999182
) |
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An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence |
Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP
|
Journal of Biomedical Informatics 2008 |
(Abstract) (PMID: 18395495
) |
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A Normalized Lexical Lookup Approach to Identifying UMLS Concepts in Free Text |
Bashyam V, Bennett DB, Browne AC, Taira RK
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Stud Health Technol Inform. 2007;129(Pt 1):545-9 |
(Abstract) (PMID: 17911776
) |
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Auditing the NCI Thesaurus with Semantic Web Technologies |
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Auditing the NCI thesaurus with Semantic Web technologies |
(Abstract) (PDF)
(PMID: 18999265
) |
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Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System |
Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P
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Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008). Berlin Heidelberg New York: Springer; 2008. p. 61-76 |
(Abstract) (PDF)
|
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Beyond Surface Characteristics: A New Health Text-specific Readability Measurement |
Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q
|
AMIA Annu Symp Proc. 2007 Oct 11:418-22 |
(Abstract) (PMID: 18693870
) |
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Biological Entity Recognition with Conditional Random Fields |
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AMIA Annu Symp Proc. 2008 Nov 6:293-7 |
(Abstract) (PMID: 18999272
) |
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Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support |
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Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):67-79 |
(Abstract) (PMID: 18660879
) |
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Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies |
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Proc. KR-MED 2008 |
(Abstract) |
|
Design and Implementation of a Personal Medication Record - MyMedicationList |
Zeng K, Bodenreider O, Nelson SJ
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AMIA Annu Symp Proc 2008:844-848 |
(Abstract) (PDF)
(PMID: 18998962
) |
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Issues in Mapping LOINC Laboratory Tests to SNOMED CT |
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AMIA Annu Symp Proc 2008:51-55 |
(Abstract) (PMID: 18999311
) |
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Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing |
Aronson AR, Mork JG, Shooshan SE, Demner-Fushman D
|
AMIA Annu Symp Proc. 2008 Nov 6:21-5 |
(Abstract) (PMID: 18998883
) |
|
MyMedicationList: Integrating Personal Medication Records with Resources |
Nelson SJ, Zeng K, Bodenreider O
|
AMIA Annu Symp Proc 2008:1228 |
(Abstract) (PDF)
(PMID: 18998987
) |
|
Natural Language Processing Versus Content-Based Image Analysis for Medical Document Retrieval |
Neveol A, Deserno TM, Darmoni SJ, Guld MO, Aronson AR
|
Journal of the American Society for Information Science and Technology 60(1):123-134, 2009 |
(Abstract) |
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Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues |
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In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4 |
(Abstract) (PDF)
|
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Semantic Processing to Support Clinical Guideline Development |
Fiszman M, Ortiz E, Bray BE, Rindflesch TC
|
AMIA Annu Symp Proc. 2008 Nov 6:187-91 |
(Abstract) (PMID: 18999127
) |
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Semantic Web for Translational Biomedicine: Two Pilot Experiments |
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Proc. MIA Summit on Translational Bioinformatics 2008:141 |
(Abstract) (PDF)
|
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SNOMED CT: Browsing the Browsers |
|
Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36 |
(Abstract) |
|
Standards, Security and Usability: Experience with MyMedicationList |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
|
Proc. AMIA Spring Congress 2008 |
(PDF)
|
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The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site |
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez
|
Nucleic Acids Res 2008;36(8):2777-2786 |
(Abstract) (PMID: 18367472
) |
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The Impact of Directionality in Predications on Text Mining |
Leroy G, Fiszman M, Rindflesch TC
|
Hawaii International Conference on System Sciences (HICSS-41), January 2008 |
(Abstract) |
|
Toward Automatic Recognition of High Quality Clinical Evidence. |
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB
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AMIA Annu Symp Proc. 2008 Nov 6:368 |
(Abstract) (PMID: 18998881
) |
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Using the RxNorm Web Services API for Quality Assurance Purposes |
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AMIA Annu Symp Proc 2008:591-595 |
(Abstract) (PMID: 18999038
) |
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Year 2007 | Back to top |
Advancing Translational Research with the Semantic Web |
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, et al
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BMC Bioinformatics 2007;8(Suppl 3):S2. |
(Abstract) (PDF)
|
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Aligning Anatomical Ontologies: The Role of Complex Structural Rules |
Zhang S, Bodenreider O, Kantz N
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IIAS-Transactions on Systems Research and Cybernetics - Proceedings of the 18th International Conference on Systems Research, Informatics and Cybernetics (InterSymp 2006) 2006;VI(2):27-32. |
(Abstract) (PDF)
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A Multidiscipline Conceptual Framework for Consumer Health Informatics |
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Medinfo 2007 12 (Pt2):1169-1173. |
(Abstract) (PDF)
|
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An Evaluation of the Usability of Accessing MEDLINE over Short Messaging System |
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MEDINFO 2007:235-236 |
(Abstract) (PDF)
|
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An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information |
Sahoo S, Bodenreider O, Zeng K, Sheth AP
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Proceedings of the workshop on Health Care and Life Sciences Data Integration for the Semantic Web at the 16th International World Wide Web Conference (WWW2007) (electronic proceedings: http://www2007.org/workshops/paper_149.pdf) |
(Abstract) (PDF)
|
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Answering Clinical Questions with Knowledge-based and Statistical Techniques |
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Computational Linguistics. 2007 Jan;33(1):63-103 |
(Abstract) (PDF)
|
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Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study |
Keselman A, Tse T, Crowell J et al
|
J Med Internet Res. 2007 Mar 14;9(1):e5 |
(Abstract) (PDF)
|
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A UMLS-based Spell Checker for Natural Language Processing in Vaccine Safety |
Tolentino HD, Matters MD, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne DC
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BMC Medical Informatics and Decision Making 2007, 7:3 |
(Abstract) (PDF)
|
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Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations |
Neveol A, Mork JG, Aronson R
|
Proc BioNLP 2007 Workshop, 183-92. |
(Abstract) (PDF)
|
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Clinical, Classroom or Personal Education: Attitudes About Health Literacy |
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JMLA 95:2 (April 2007): 127-137. |
(Abstract) (PDF)
|
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Clinical Ontologies for Discovery Applications |
Lussier YA, Bodenreider O
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In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119. |
(Abstract) (PDF)
|
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Co-evolutionary Rates of Functionally Related Yeast Genes |
Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK
|
Evolutionary Bioinformatics Online 2006;2:295-300. |
(Abstract) (PDF)
|
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Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS |
Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S
|
Medinfo 2007:605-609. |
(Abstract) (PDF)
(PMID: 17911788
) |
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Comparing Two Approaches for Aligning Representations of Anatomy |
Zheng S, Mork P, Bodenreider O, Bernstein PA
|
Artificial Intelligence in Medicine 2007;39(3):227-236. |
(Abstract) (PDF)
|
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Cryoelectron Tomographic Analysis of an HIV-neutralizing Protein and Its Complex with Native Viral gp120 |
Bennett A, Liu J, Van Ryk D, Bliss D, Arthos J, Henderson RM, Subramaniam S
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J Biol Chem. 2007 Sep 21;282(38):27754-9. Epub 2007 Jun 28. |
(Abstract) (PDF)
|
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Do Computer-generated Summaries, 'The Bottom Line (TBL)' Accurately Reflect Published Journal Abstracts? |
|
AMIA Annu Symp Proc; 2007;1135 |
(Abstract) (PDF)
|
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Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle |
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Proceedings of the 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf) |
(Abstract) (PDF)
|
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Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics |
Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC
|
Pacific Symposium on Biocomputing 2007 12:209-220 |
(Abstract) (PDF)
|
|
Extractive Summarization in Clinical Trials Protocol Summaries: A Case Study |
Rosemblat G, Graham L, Tse T
|
In: Proceedings, 3rd Indian International Conference on Artificial Intelligence (IICAI-2007), pp. 1824-1837 |
(Abstract) (PDF)
|
|
From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology |
Sahoo SS, Zeng K, Bodenreider O, Sheth A
|
MEDINFO 2007:1260-1264 |
(Abstract) (PDF)
|
|
Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest |
|
Proc. OAEI 2007:139-149. |
(Abstract) (PDF)
|
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Identifying Mismatches in Alignments of Large Anatomical Ontologies |
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Proc AMIA Annu Symp; 2007:851-855 |
(Abstract) (PDF)
|
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Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository |
|
Proc AMIA Annu Symp; 2007:1170 |
(Abstract) (PDF)
|
|
Interpreting Comparative Constructons in Biomedical Text |
Fiszman M, Demner-Fushman D, Lang FM, Goetz P, Rindflesch TC
|
Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 137-144, Prague, Czech Republic. |
(Abstract) (PDF)
|
|
Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies |
Bodenreider O, Smith B, Kumar A, Burgun A
|
Artificial Intelligence in Medicine 2007;39(3):183-195. |
(Abstract) (PDF)
(PMID: 17241777
) |
|
Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus |
|
Proc AMIA Annu Symp; 2007:pp 85-89. |
(Abstract) (PDF)
(PMID: 18693803
) |
|
Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE |
Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC
|
2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21 |
(Abstract) (PDF)
|
|
Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies |
|
MEDINFO 2007:822-826. |
(Abstract) (PDF)
|
|
MedlinePlus en Espaniol and Spanish-Speakers |
|
AMIA Annu Symp Proc; 2007;1028 |
(Abstract) (PDF)
|
|
Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature |
Neveol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR
|
Pacific Symposium on Biocomputing 2007 12:293-303 |
(Abstract) (PDF)
|
|
New Frontiers in Biomedical Text Mining |
Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB
|
Pacific Symposium on Biocomputing 12:205-208(2007) |
(Abstract) (PDF)
|
|
Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration |
|
Proc. of the APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007 2007:Abstract 342. |
(Abstract) (PDF)
|
|
PICO Linguist and BabelMeSH: Development and Partial Evaluation of Evidence-based Multilanguage Search Tools for MEDLINE/PubMed |
Fontelo P, Liu F, Leon S, Anne A, Ackerman M
|
MEDINFO 2007, K. Kuhn et al. (Eds.) |
(Abstract) (PDF)
|
|
RxNav: An Integrated View on Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
|
Proc AMIA Annu Symp; 2007:1202 |
(Abstract) (PDF)
|
|
RxNav: Towards an Integrated View on Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson S
|
MEDINFO 2007:386. |
(Abstract) (PDF)
|
|
Scanning the Emerging Infectious Diseases Horizon - Visualizing ProMED Emails Using EpiSPIDER |
Tolentino H, Kamadjeu R, Fontelo P, Liu F et al.
|
Advances in Disease Surveillance 2007;2:169 |
(Abstract) (PDF)
|
|
Semantic Clustering of Answers to Clinical Questions |
|
To appear in Proceedings of the 2007 Annual Symposium of the American Medical Information Association (AMIA 2007), Chicago, November 2007, pp. 458-462 |
(Abstract) (PDF)
|
|
Technical Development of PubMed Interact: an Improved Interface for MEDLINE/PubMed Searches |
|
BMC Medical Informatics and Decision Making 2006, 6:36. |
(Abstract) (PDF)
|
|
Term Identification Methods for Consumer Health Vocabulary Development |
Zeng QT, Tse T, Divita G et al
|
J Med Internet Res. 2007 Feb 28;9(1):e4 |
(Abstract) (PDF)
|
|
The Consumers' Perspective: Text Features and Readability of Consumer Health Text |
|
Mednet 2007: Germany. 12 Oct 2007. |
(Abstract) |
|
Using Discourse Analysis to Improve Text Categorization in MEDLINE |
Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR
|
Medinfo 2007:710-715. |
(Abstract) (PDF)
|
|
Utilization of the PICO Framework to Improve Searching PubMed for Clinical Questions |
Schardt C, Adams MB, Owens T, Jeitz S, Fontelo P
|
BMC Med Inform Decis Mak. 2007 Jun 15;7:16. |
(Abstract) (PDF)
|
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Year 2006 | Back to top |
Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering |
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Proceedings of the 21th International Conference on Computational Linguistics and 44th Annual Meeting of the Association for Computational Linguistics (COLING/ACL 2006), July 2006, Sydney, Australia |
(Abstract) (PDF)
|
|
Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval |
Ruch P, Tbahriti I, Bobeill J, Aronson AR
|
Proc. COLING/ACL 2006, 675-82 |
(Abstract) (PDF)
|
|
Argument-predicate Distance as a Filter for Enhancing Precision in Extracting Predications on the Genetic Etiology of Disease |
Masseroli M, Kilicoglu H, Lang F-M, Loane RF, Rindflesch TC
|
BMC Bioinformatics 2006; 7:291 |
(Abstract) (PDF)
|
|
Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study |
Keselman A, Tse T, Crowell J, Browne A, Ngo L, Zeng Q
|
Mednet 2006 |
(Abstract) (PDF)
|
|
Automatically Identifying Health Outcome Information in MEDLINE Records |
Demner-Fushman D, Few B, Hauser SE, Thoma GR
|
J Am Med Inform Assoc. 2006 Jan-Feb;13(1):52-60 |
(Abstract) (PDF)
|
|
Besides Precision and Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE |
Neveol A, Zeng K, Bodenreider O
|
Proc AMIA Symp 2006:589-593 |
(Abstract) (PDF)
|
|
Bio-ontologies: Current Trends and Future Directions |
|
Briefings in Bioinformatics 2006;7(3):256-274 |
(Abstract) (PDF)
|
|
Comparing the Representation of Anatomy in the FMA and SNOMED CT |
|
Proc AMIA Symp 2006:46-50 |
(Abstract) (PDF)
|
|
Concept Negation in Free Text Components of Vaccine Safety Reports |
Tolentino H, Matters M, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne D
|
AMIA Annu Symp Proc. 2006;1122 |
(Abstract) (PDF)
|
|
Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes |
|
In Proceedings of the 9th ISKO Conference, pages 173-182, Vienna, Austria, July 2006. |
(Abstract) (PDF)
|
|
Data Integration Through Data Elements: Mapping Data Elements to Terminological Resources |
Mougin F, Burgun A, Bodenreider O
|
Proceedings of the Second Interntional Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:52-59 |
(Abstract) (PDF)
|
|
Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches |
Bodenreider O, Peters L, McCray A
|
Proc AMIA Symp 2006:804-808 |
(Abstract) (PDF)
|
|
Experience in Reasoning with the Foundational Model of Anatomy in OWL DL |
Zhang S, Bodenreider O, Golbreich C
|
In: Altman RB, Dunker AK, Hunter L, Murray TA, Klein TE, editors. Pacific Symposium on Biocomputing 2006: World Scientific; 2006. p. 200-211. |
(Abstract) (PDF)
|
|
Exploiting Semantic Relations for Literature-Based Discovery |
Hristovski D, Friedman C, Rindflesch TC
|
AMIA Annu Symp Proc. 2006; 349-53 |
(Abstract) (PDF)
|
|
Exploring User Navigation during Online Health Information Seeking |
Graham L, Tse T, Keselman A
|
Proc. AMIA 2006 |
(Abstract) (PDF)
|
|
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort |
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR
|
Proc TREC 2006, 569-76 |
(Abstract) (PDF)
|
|
Generative Content Models for Structural Analysis of Medical Abstracts |
Lin J, Karakos D, Demner-Fushman D, Khudanpur S
|
Proceedings of the 2006 Workshop on Biomedical Natural Language Processing (BioNLP'06), June 2006, New York City, New York |
(Abstract) (PDF)
|
|
Global Similarity and Local Divergence in Human and Mouse Gene Co-expression Networks |
Tsaparas P, Marino-Ramirez L, Bodenreider O
|
BMC Evol Biol 2006;6(1):70 |
(Abstract) (PDF)
|
|
Information Rx: Evaluation of a New Informatics Tool for Physicians, Patients, and Libraries |
Siegel ER, Logan RA, Harnsberger RL, Cravedi K, Krause JA, Lyon B, Hajarian K, Uhl J, Ruffin A, Lindberg DA
|
Information Services and Use. 2006: 16(1): 1-10 |
(Abstract) (PDF)
|
|
Interpretation of Data and Identification of Information are Sine Qua Non for Modern Digital Information Services |
|
Proceedings of AMIA Symposium, 2006 |
(Abstract) (PDF)
|
|
Law and Order: Assessing and Enforcing Compliance with Ontological Modeling Principles in the Foundational Model of Anatomy |
|
Computers in Biology and Medicine 2006; 36(6-7):674-693 |
(Abstract) (PDF)
|
|
Lexical, Terminological and Ontological Resources for Biological Text Mining |
|
Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66. |
(Abstract) (PDF)
|
|
Mapping Data Elements to Terminological Resources for Integrating Biomedical Data Sourcse |
Mougin F, Burgun A, Bodenreider O
|
BMC Bioinformatics 2006;7(Suppl 3):S6 |
(Abstract) (PDF)
|
|
NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest |
|
Proceedings of the Ontology Alignment Evaluation Initiative 2006 Campaign (OAEI 2006) 2006:145-156 |
(Abstract) (PDF)
|
|
Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions |
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A
|
In: Proceedings of IEEE International Conference on Data Mining (ICDM) 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119 |
(Abstract) (PDF)
|
|
RxNav: A Web Service for Standard Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
|
Proc AMIA Symp 2006:1198 |
(Abstract) (PDF)
|
|
Semantic Representation of Consumer Questions and Physician Answers |
Slaughter LA, Soergel D, Rindflesch TC
|
Int J Med Inform. 2006;75(7):513-29 |
(Abstract) (PDF)
|
|
Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases |
|
Proceedings of COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia |
(Abstract) (PDF)
|
|
Summarizing Drug Information in Medline Citations |
Fiszman M, Rindflesch TC, Kilicoglu H
|
AMIA Annu Symp Proc. 2006; 254-8 |
(Abstract) (PDF)
|
|
Text Features and Readability: Expert Evaluation of Consumer Health Text |
Rosemblat G, Logan R, Tse T, Graham L
|
Mednet 2006: 11th World Congress on Internet in Medicine the Society for Internet in Medicine. October 14-16, 2006. Toronto, Canada. |
(Abstract) (PDF)
|
|
The Effect of User Factors on Consumer Familiarity with Health Terms: Using Gender as a Proxy for Background Knowledge about Gender-Specific Illnesses |
Keselman A, Massengale L, Ngo L, Browne A, Zeng Q
|
ISBMDA 2006: 472-481 |
(Abstract) (PDF)
|
|
The Foundational Model of Anatomy in OWL: Experience and Perspectives |
Golbreich C, Zhang S, Bodenreider O
|
Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
(Abstract) (PDF)
|
|
The Role of Knowledge in Conceptual Retrieval: A Study in the Domain of Clinical Medicine |
|
Proceedings of the 29th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2006), pages 99-106, August 2006, Seattle, Washington |
(Abstract) (PDF)
|
|
The Role of the National Library of Medicine Web Sites in Newborn Screening Education |
|
Ment Retard Dev Disabil Res Rev. 2006;12(4):305-12 |
(Abstract) (PDF)
|
|
Txt2MEDLINE: Text-Messaging Access to MEDLINE/PubMed |
Fontelo P, Liu F, Muin M, Tolentino H, Ackerman MJ
|
Proc.AMIA Annu Symp Proc. 2006;:259-63. |
(Abstract) (PDF)
|
|
User Study of a Spanish-language ClinicalTrials.gov Prototype System |
|
To appear in Proceedings of the American Medical Informatics Association Annual Conference (AMIA 2006), Washington, DC, November 2006 pp 659-664. |
(Abstract) (PDF)
|
|
Using Dependence Relations in MeSH as a Framework for the Analysis of Disease Information in Medline |
|
Proceddings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:76-83 |
(Abstract) (PDF)
|
|
Using UMLS Metathesaurus Concepts to Describe Medical Images: Dermatology Vocabulary |
Woods JW, Sneiderman CA, Hameed K, Ackerman MJ, Hatton C
|
Comput Biol Med. 2006 Jan;36(1):89-100. |
(Abstract) (PDF)
|
|
Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration |
Mougin F, Burgun A, Bodenreider O
|
Proc AMIA Symp 2006:574-578. |
(Abstract) (PDF)
|
|
Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment |
Humphrey SM, Rogers WJ, Kilicoglu H, Demner-Fushman D, Rindflesch TC
|
Journal of the American Society for Information Science and Technology. 2006 Jan 1;57(1):96-113. |
(Abstract) (PDF)
|
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Year 2005 | Back to top |
A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications |
Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY
|
Proc. AMIA 2005: 21-25 |
(Abstract) (PDF)
|
|
Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference |
|
Proceedings of AMIA Annual Symposium 2005:864-868. |
(Abstract) (PDF)
|
|
An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis |
Wang H, Azuaje F, Bodenreider O
|
Proceedings of the 18th IEEE International Symposium on Computer-Based Medical Systems 2005:389-394. |
(Abstract) (PDF)
|
|
An ontology of chemical entities helps identify dependence relations among Gene Ontology terms |
|
Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM-2005) 2005. |
(Abstract) (PDF)
|
|
Approaches to Eliminating Cycles in the UMLS Metathesaurus: Naive vs. Formal |
|
Proceedings of AMIA Annual Symposium 2005:550-554. |
(Abstract) (PDF)
|
|
Assessment of the National Library of Medicine's Health Disparities Plan: A Focus on Native American Outreach |
Siegel ER, Wood FB, Dutcher GA, Ruffin A, Logan RA, Scott J
|
Journal of the Medical Library Association. 93:4 (October 2005): 10-20 |
(Abstract) (PDF)
|
|
Biomedical Ontologies |
|
In: Chen H, Fuller S, Jersh WR, Friedman C, editors. Medical Informatics: Advances in Knowledge Management and Data Mining in Biomedicine: Springer-Verlag; 2005. p. 211-236. |
(Abstract) (PDF)
|
|
Classifying diseases with respect to anatomy: a study in SNOMED CT |
Bergun A, Bodenreider O, Mougin F
|
Proceedings of AMIA Annual Symposium 2005:91-95. |
(Abstract) (PDF)
|
|
Creating a Vaccine Adverse Event Ontology for Public Health |
Herman TD, Liu F, Sagaram D, Raoul K, Fontelo P, Kohl K, Payne D
|
AMIA Annu Symp Proc. 2005;978 |
(Abstract) (PDF)
|
|
Determining Prominent Subdomains in Medicine |
Bernhardt PJ, Humphrey SM, Rindflesch TC
|
Proceedings of the AMIA Annual Symposium. 2005;:46-50. |
(Abstract) (PDF)
|
|
Effects of Information and Machine Learning Algorithms on Word Sense Disambiguation with Small Datasets |
|
International Journal of Medical Informatics. 2005 Aug;74(7-8):573-85. |
(Abstract) (PDF)
|
|
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus |
Neveol A, Mork JG, Aronson AR, Darmoni SJ
|
AMIA Annu Symp Proc. 2005;:565-9 |
(Abstract) (PDF)
|
|
Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents |
Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ
|
Proc TREC 2005, 36-45 |
(Abstract) (PDF)
|
|
GenesTrace: Phenomic Knowledge Discovery Via Structured Terminologies |
Cantor MN, Sarkar INK, Bodenreider O, Lussier YA
|
Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:103-114. |
(Abstract) (PDF)
|
|
Implementing RxNav, a RxNorm Browser |
Zeng K, Bodenreider O, Nelson SJ
|
Proceedings of Medical Informatics Europe 2005 (CD-ROM) 2005:1268. |
(Abstract) (PDF)
|
|
Issues in the Classification of Disease Instances with Ontologies |
Bergun A, Bodenreider O, Jacquelinet C
|
Stud Health Technol Inform 2005;116:695-700. |
(Abstract) (PDF)
|
|
Knowledge Integration for Bio-Threat Response |
Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C
|
Los Alamos White Paper |
(Abstract) (PDF)
|
|
Linking the Gene Ontology to other biological ontologies |
|
Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18. |
(Abstract) (PDF)
|
|
Medical Facts to Support Inferencing in Natural Language Processing |
Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchex VR
|
Proceedings of the AMIA Annual Symposium. 2005;:634-38. |
(Abstract) (PDF)
|
|
MedPost: A Part of Speech Tagger for BioMedical Text |
Smith L, Rindflesch TC, Wilbure WJ
|
Bioinformatics. 2004 Sep 22;20(14):2320-1. |
(Abstract) (PDF)
|
|
MedTag: A Collection of Biomedical Annotations |
Smith L, Rindflesch TC, Wilbure WJ
|
Bioinformatics. 2004 Sep 22;20(14):2320-1. |
(Abstract) (PDF)
|
|
Migrating the FMA from Protege to OWL |
Golbreich C, Zhang S, Bodenreider O
|
Proceedings of the Eighth International Protege Conference 2005:108-111. |
(Abstract) (PDF)
|
|
Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology |
Bodenreider O, Aubry M, Burgun A
|
Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:91-102. |
(Abstract) (PDF)
|
|
Of Mice and Men: Aligning Mouse and Human Anatomies |
Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S
|
Proceedings of AMIA Annual Symposium 2005:61-65. |
(Abstract) (PDF)
|
|
Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment |
Azuaje F, Wang H, Bodenreider O
|
Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10. |
(Abstract) (PDF)
|
|
Promoting the Usability of Online AMIA Symposium Proceedings |
m GR, Zambrowicz C, Zhang D, Fontelo P, Abbott PA
|
AMIA Annu Symp Proc. 2005;1008 |
(Abstract) (PDF)
|
|
RxNav: A Progress Report |
Zeng K, Bodenreider O, Nelson SJ
|
Proceedings of AMIA Annual Symposium 2005:1168. |
(Abstract) (PDF)
|
|
Semantic Characteristics of MEDLINE Citations Useful for Therapeutic Decision-making |
Sneiderman C, Demner-Fushman D, Fiszman M, Rindflesch TC
|
Proceedings of AMIA Annual Symposium, 2005;:1117. |
(Abstract) (PDF)
|
|
Semantic Interpretation for the Biomedical Research Literature |
Rindflesch TC, Fiszman M, Bisharah L
|
In Hsinchun C, Fuller S, Friedman C, Hersh w (eds.) Medical Informatics: Knowledge Management and Data Mining in Biomedicine. Springer: New York, pp. 399-422, 2005. |
(Abstract) (PDF)
|
|
Semantic Representation of Consumer Questions and Physician Answers |
Slaughter LA, Soergel D, Rindflesch TC
|
International Journal of Medical Informatics. August 23, 2005. |
(Abstract) (PDF)
|
|
Semi-Automatic Indexing of Full Text Biomedical Articles |
Gay CW, Kayaalp M, Aronson AR
|
AMIA Annu Symp Proc. 2005;:271-5 |
(Abstract) (PDF)
|
|
The Foundational Model of Anatomy in OWL: experience and perspectives |
Golbreich C, Zhang S, Bodenreider O
|
Proceedings of the Workshop on OWL: Experiences and Directions 2005. |
(Abstract) (PDF)
|
|
The Importance of the Lexicon in Tagging Biological Text |
Smith LH, Rindflesch TC, Wilbur WJ
|
Natural Language Engineering 2005. |
(Abstract) (PDF)
|
|
The National Library of Medicine's Native American Outreach Portfolio: A Descriptive Overview |
Wood FB, Siegel ER, Dutcher GA, Ruffin A, Logan RA
|
Journal of the Medical Library Association. 93:4 (October 2005): 21-34 |
(Abstract) (PDF)
|
|
Utilizing the UMLS for Semantic Mapping between Terminologies |
|
Proceedings of AMIA Annual Symposium 2005:266-270. |
(Abstract) (PDF)
|
|
Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data? |
|
Proc AMIA Symposium 2005 |
(Abstract) (PDF)
|
|
|
|
Year 2004 | Back to top |
Abstraction Summarization for Managing the Biomedical Research Literature |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proceedings of the HLT-NAACL Workshop on Computational Lexical Semantics. 2004;:76-83. |
(Abstract) (PDF)
|
|
Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications |
|
Medinfo. 2004 Sept.;2004:327-331. |
(Abstract) (PDF)
|
|
Application of a Medical Text Indexer to an Online Dermatology Atlas |
Kim GR , Aronson AR, Mork JG, Cohen BA, Lehmann CU
|
MedInfo. 2004 Sept.;2004:. |
(Abstract) (PDF)
|
|
Challenges for Integrating Korean Medical Vocabulary into the UMLS |
Choi J, Han SB, Kim S, Hole WT, Srinivasan S
|
MedInfo. 2004 Sept.;2004: 1554. |
(Abstract) (PDF)
|
|
Comparing Associative Relationships Among Equivalent Concepts Across Ontologies |
|
MedInfo. 2004 Sept.;2004: 459-463. |
(Abstract) (PDF)
|
|
Development of a Test Collection of Manually Extracted Semantic Relationships in Health Consumer Texts |
Slaughter LA, Rindflesch TC
|
MedInfo. 2004 Sept.;2004: 1865. |
(Abstract) (PDF)
|
|
From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms (Abstract) |
Bodenreider O, Aubry M, Burgun A
|
Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:53. |
(Abstract) (PDF)
|
|
GenesTraceTM: Biological Knowledge Discovery via Structured Terminology |
Sarkar IN, Cantor MN, Bodenreider O, Lussier YA
|
MedInfo. |
(Abstract) (PDF)
|
|
Gene Terms and English Words: An Ambiguous Mix |
Sehgal AK, Srinivasan P, Bodenreider O
|
Proceedings of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004. |
(Abstract) (PDF)
|
|
How Two Korean Newspapers Covered a Public Health Crisis |
Logan RA, Park J, Shin JH
|
Science Communication. 25:4:365-389 (June 2004) |
(Abstract) (PDF)
|
|
Identifying Anatomical Concepts in Biomedical Text for Automatic Selection of Images |
Bernhardt PJ, Rindflesch TC, Kilicoglu H, Tringali M
|
Medinfo. 2004 Sept.;2004: 1521. |
(Abstract) (PDF)
|
|
Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap |
Chapman WW, Fiszman M, Dowling JN, Chapman BE, Rindflesch TC
|
Medinfo. 2004 Sept.;2004: 487-491. |
(Abstract) (PDF)
|
|
Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain |
|
Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE, editors. Pacific Symposium on Biocomputing 2004: World Scientific. 2004;: 250-261. |
(Abstract) (PDF)
|
|
Knowledge-intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations |
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loanne RR, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N
|
Proc TREC 2004, 503-11 |
(Abstract) (PDF)
|
|
Lessons Learned from Aligning two Representations of Anatomy |
Zhang S, Mork P, Bodenreider O
|
In: Hahn U, Schulz S, Cornet R, editors. Proceedings of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108. |
(Abstract) (PDF)
|
|
Mapping the Gene Ontology Into the Unified Medical Language System |
|
Comparative and Functional Genomics |
(Abstract) (PDF)
|
|
Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data |
|
Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July. |
(Abstract) (PDF)
|
|
Prevailing Impressions of Social Actors in Korean News Coverage of a Public Health Crisis |
Logan RA, Shin JH, Park J
|
Science Communication. 25:4:399-418 (June 2004) |
(Abstract) (PDF)
|
|
RxNav: A Semantic Navigation Tool for Clinical Drugs |
|
Medinfo. 2004 Sept.;2004: 1530. |
(Abstract) (PDF)
|
|
Strategies for Mapping Concepts in Gastrointestinal Endoscopy Reports to the UMLS Metathesaurus |
Tringali M, Rindflesch TC, Kilicoglu H, Fiszman M, Bodenreider O
|
Medinfo. 2004 Sept.;2004: 1885. |
(Abstract) (PDF)
|
|
Summarization of an Online Medical Encyclopedia |
Fiszman M, Rindflesch TC, Kilicoglu H
|
MedInfo. 2004 Sept.;2004: 506-510. |
(Abstract) (PDF)
|
|
The NLM Indexing Initiative's Medical Text Indexer |
Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers WJ
|
Medinfo. 2004 Sept.;2004: 268-272. |
(Abstract) (PDF)
|
|
The Unified Medical Language System (UMLS): Integrating Biomedical Terminology |
|
Nucleic Acids Res; Database Issue. 2004;32: 267-70. |
(Abstract) (PDF)
|
|
Using Natural Languge Processing, Locus Link, and the Gene Ontology to Compare OMIM to MEDLINE |
Libbus B, Kilicoglu H, Rindflesch TC, Mork JG, Aronson AR
|
Proceedings of the HLT-NAACL Workshop on Linking the Biological Literature, Ontologies and Databases: Tools for Users. 2004;:69-76. |
(Abstract) (PDF)
|
|
Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naive Bayes Classifier |
|
Medinfo. 2004 Sept.;2004: 381-385. |
(Abstract) (PDF)
|
|
|
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Year 2003 | Back to top |
Adding NeuroNames to the UMLS Metathesaurus |
|
Neuroinformatics. 2003; 1 (1):61-63. |
(Abstract) (PDF)
|
|
Aligning Representations of Anatomy Using Lexical and Structural Methods |
|
Proc. AMIA Symposium. 2003 Nov;:753-757. |
(Abstract) (PDF)
|
|
An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS |
Cantor MN, SI N, Hartel F, Bodenreider O, Lussier YA
|
Stud Health Technol Inform. 2003;:62-67. |
(Abstract) (PDF)
|
|
An Upper Level Ontology for the Biomedical Domain |
|
Comp Funct Genom. 2003;4:80-4. |
(Abstract) (PDF)
|
|
Biomedical Ontologies |
Bodenreider O, Mitchell JA, McCray AT
|
Pacific Symposium on Biocomputing: World Scientific. 2003;:562-564. |
(Abstract) (PDF)
|
|
Evaluation of WordNet as a Source of Lay Knowledge for Molecular Biology and Genetic Diseases: A Feasibility Study |
Bodenreider O, Burgun A, Mitchell JA
|
Stud Health Technol Inform. 2003;95:379-384. |
(Abstract) (PDF)
|
|
Exploring Adjectival Modification in Biomedical Discourse Across Two Genres |
Bodenreider O, Pakhomov S
|
Proc. of the ACL, 2003 Workshop, Natural Language Processing in Biomedicine. 2003;:105-112. |
(Abstract) (PDF)
|
|
Exploring Semantic Groups Through Visual Approaches |
Bodenreider O , McCray AT
|
Journal of Biomedical Informatics. 2003;36(6):414-432 |
(Abstract) (PDF)
|
|
From Phenotype to Genotype: Issues in Navigating the Available Information Resources |
Mitchell JA , McCray AT , Bodenreider O
|
Methods of Information in Medicine. 2003;42(5):557-563. |
(Abstract) (PDF)
|
|
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs |
Mitchell JA , Aronson AR , Mork JG , Folk LC , Humphrey SM , Ward JM
|
Proc. AMIA Symposium. 2003 Nov;:460-464. |
(Abstract) (PDF)
|
|
Generating Hypotheses by Discovering Implicit Associations in the Literature: A Case Report of a Search for New Potential Therapeutic Uses for Thalidomide |
Weeber M, Vos R, Klein H, De Jong-Van Den Berg LT, Aronson AR, Molema G
|
J Am Med Inform Assoc. ;10(3):252-9. |
(Abstract) (PDF)
(PMID: 12626374
) |
|
Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:239-243. |
(Abstract) (PDF)
|
|
Interpreting Hypernymic Propositions in an Online Medical Encyclopedia |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:840. |
(Abstract) (PDF)
|
|
Knowledge Augmentation for Aligning Ontologies: An Evaluation in the Biomedical Domain |
|
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003: 109-114. |
(Abstract) (PDF)
|
|
Language and Vocabulary Tools |
Brown AC , Divita Guy , Aronson AR , McCray AT
|
Proc. AMIA Symposium. 2003 Nov;:. |
(Abstract) (PDF)
|
|
Semantic Integration in Biomedicine |
|
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003;: 156-157. |
(Abstract) (PDF)
|
|
Semantic Relations Asserting the Etiology of Genetic Diseases |
Rindflesch TC , Libbus B , Hristovski D , Aronson AR , Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:554-558. |
(Abstract) (PDF)
|
|
Strength in Numbers: Exploring Redundancy in Hierarchical Relations Across Biomedical Terminologies |
|
Proc. AMIA Symposium. 2003 Nov;101-105:. |
(Abstract) (PDF)
|
|
The Interaction of Domain Knowledge and Linguistic Structure in Natural Language Processing: Interpreting Hypernymic Propositions in Biomedical Text |
Rindflesch TC , Fiszman M
|
Journal of Biomedical Informatics. 2003;36(6):462-77. |
(Abstract) (PDF)
|
|
The UMLS Knowledge Source Server: An Object Model For Delivering UMLS Data |
Bangalore A , Thorn KE , Tilley C , Peters L
|
Proc. AMIA Symposium. 2003 Nov;:51-55. |
(Abstract) (PDF)
|
|
The UMLS Semantic Network and the Semantic Web |
|
Proc. AMIA Symposium. 2003 Nov;:351-355. |
(Abstract) (PDF)
|
|
Towards Linking Patients and Clinical Information: Detecting UMLS Concepts in E-mail |
Brennan PF, Rindflesch TC
|
J Biomed Inform. 2003 Aug-Oct;36(4-5):334-41 |
(Abstract) (PDF)
|
|
Towards Semi-Automatic Generation of Biomedical Ontologies |
Kashyap V , Ramakrishan C , Rindflesch TC
|
Proc. AMIA Symposium. 2003 Nov;:886. |
(Abstract) (PDF)
|
|
|
|
Year 2002 | Back to top |
A Conceptual Framework for the Biomedical Domain |
|
The Semantics of Relationships: An Interdisciplinary Perspective. Boston: Kluwer Academic Publishers. 2002;:181-198. |
(Abstract) (PDF)
|
|
A Semantic Normal Form for Clinical Drugs in the UMLS: Early Experiences with the VANDF |
Nelson SJ, Brown SH, Erlbaum MS, Olson N, Powell T, Carlsen B, Carter J, Tuttle MS, Hole WT
|
Proc AMIA Symp. 2002 ;():557-61. |
(Abstract) (PDF)
(PMID: 12463886
) |
|
Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
|
Int J Med Inf. 2002 Dec 4;67(1-3):85-95. |
(Abstract) (PDF)
(PMID: 12460634
) |
|
Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
|
Proc. of the Workshop on Natural Language Processing in Biomedical Applications. 2002;:77-83. |
(Abstract) (PDF)
|
|
A Study of Abbreviations in MEDLINE Abstracts |
Liu H, Aronson AR, Friedman C
|
Proc AMIA Symp. 2002 ;():464-8. |
(Abstract) (PDF)
(PMID: 12463867
) |
|
Characterizing the Definitions of Anatomical Concepts in WordNet and Specialized Sources |
|
Proc. of the First Global WordNet Conference. 2002;:223-230. |
(Abstract) (PDF)
|
|
Discovering Protein Similarity Using Natural Language Processing |
|
Proc AMIA Symp. 2002 ;():677-81. |
(Abstract) (PDF)
(PMID: 12463910
) |
|
Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics |
Bodenreider O, Mitchell JA, McCray AT
|
Proc. of AMIA Annual Symposium. 2002;:61-65. |
(Abstract) (PDF)
|
|
Exploring Text Mining from MEDLINE |
Srinivasan P, Rindflesch T
|
Proc AMIA Symp. 2002 ;():722-6. |
(Abstract) (PDF)
(PMID: 12463919
) |
|
Finding UMLS Metathesaurus Concepts in MEDLINE |
Srinivasan S, Rindflesch TC, Hole WT, Aronson AR, Mork JG
|
Proc AMIA Symp. 2002 ;():727-31. |
(Abstract) (PDF)
(PMID: 12463920
) |
|
From Phenotype to Genotype: Navigating the Available Information Resources |
Mitchell JA, McCray AT, Bodenreider O
|
Proc. of AMIA Annual Symposium. 2002;:1109. |
(Abstract) (PDF)
|
|
Integration of a Standard Gastrointestinal Endoscopy Terminology in the UMLS Metathesaurus |
Tringali M, Hole WT, Srinivasan S
|
Proc AMIA Symp. 2002 ;():801-5. |
(Abstract) (PDF)
(PMID: 12463935
) |
|
NLP-Based Information Extraction for Managing the Molecular Biology Literature |
|
Proc AMIA Symp. 2002 ;():445-9. |
(Abstract) (PDF)
(PMID: 12463863
) |
|
Representation of Roles in Biomedical Ontologies: A Case Study in Functional Genomics |
Burgun A, Bodenreider O, Le Duff F, Moussouni F, Loreal O
|
Proc AMIA Symp. 2002 ;():86-90. |
(Abstract) (PDF)
(PMID: 12463792
) |
|
Semantic Processing for Enhanced Access to Biomedical Knowledge |
Rindflesch TC, Aronson AR
|
Real World Semantic Web Applications, IOS Press. 2002;:157-72. |
(Abstract) (PDF)
|
|
The Lexical Properties of the Gene Ontology (GO) |
McCray AT, Browne AC, Bodenreider O
|
Proc. of AMIA Annual Symposium. 2002;:504-508. |
(Abstract) (PDF)
|
|
Tracking Meaning Over Time in the UMLS Metathesaurus |
Powell T, Srinivasan S, Nelson SJ, Hole WT, Roth L, Olenichev V
|
Proc AMIA Symp. 2002 ;():622-6. |
(Abstract) (PDF)
(PMID: 12463898
) |
|
Unsupervised, Corpus-Based Method for Extending a Biomedical Terminology |
Bodenreider O, Rindflesch TC, Burgun A
|
Proc. of the ACL Workshop; Natural Language Processing in the Biomedical Domain. 2002;:53-60. |
(Abstract) (PDF)
|
|
|
|
Year 2001 | Back to top |
Aggregating UMLS Semantic Types for Reducing Conceptual Complexity |
McCray AT, Burgun A, Bodenreider O
|
Medinfo. 2001 ;10(Pt 1):216-20. |
(Abstract) (PDF)
(PMID: 11604736
) |
|
An Object-Oriented Model for Representing Semantic Locality in the UMLS |
|
Medinfo. 2001 ;10(Pt 1):161-5. |
(Abstract) (PDF)
(PMID: 11604725
) |
|
Aspects of the Taxonomic Relation in the Biomedical Domain |
|
FOIS. 2001;: 222-233 |
(Abstract) (PDF)
|
|
Automatic Indexing by Discipline and High-Level Categories: Methodology and Potential Applications |
Humphrey SM, Rindflesch TC, Aronson AR
|
Advances in classification research. Proc. of the 11th ASIST SIG/CR Classification Research Workshop. 2001. |
(Abstract) (PDF)
|
|
Automatic MeSH Term Assignment and Quality Assessment |
Kim W, Aronson AR, Wilbur WJ
|
Proc AMIA Symp. 2001 ;():319-23. |
(Abstract) (PDF)
(PMID: 11825203
) |
|
Circular Hierarchical Relationships in the UMLS: Etiology, Diagnosis, Treatment, Complications, and Prevention |
|
Proc AMIA Symp. 2001 ;():57-61. |
(Abstract) (PDF)
(PMID: 11825155
) |
|
Comparing Terms, Concepts and Semantic Classes in WordNet and the Unified Medical Language System |
|
Proc. of the NAACL'2001 Workshop; WordNet and Other Lexical Resources: Applications, Extensions and Customizations. 2001;:77-82. |
(Abstract) (PDF)
|
|
Developing a Test Collection for Biomedical Word Sense Disambiguation |
Weeber M, Mork JG, Aronson AR
|
Proc AMIA Symp. 2001 ;():746-50. |
(Abstract) (PDF)
(PMID: 11825285
) |
|
Effective Mapping of Biomedical Text to the UMLS Metathesaurus: The MetaMap Program |
|
Proc AMIA Symp. 2001 ;():17-21. |
(Abstract) (PDF)
(PMID: 11825149
) |
|
Evaluating UMLS Strings for Natural Language Processing |
McCray AT, Bodenreider O, Malley JD, Browne AC
|
Proc AMIA Symp. 2001 ;():448-52. |
(Abstract) (PDF)
(PMID: 11825228
) |
|
Lexically-Suggested Hyponymic Relations Among Medical Terms and Their Representation in the UMLS |
Bodenreider O, Burgun A, Rindflesch TC
|
Proc. of TIA'2001; Terminology and Artificial Intelligence. 2001;:11-21. |
(Abstract) (PDF)
|
|
Mapping the UMLS Semantic Network into General Ontologies |
|
Proc AMIA Symp. 2001 ;():81-5. |
(Abstract) (PDF)
(PMID: 11833483
) |
|
Methods for Exploring the Semantics of the Relationships Between Co-Occurring UMLS Concepts |
|
Medinfo. 2001 ;10(Pt 1):171-5. |
(Abstract) (PDF)
(PMID: 11604727
) |
|
Proteus: A Model for Clinical Protocols Created from Knowledge Components |
|
Proc. 14th IEEE Symposium on Computer-Based Medical Systems: IEEE Computer Society. 2001 Jul;:59-64. |
(Abstract) (PDF)
|
|
Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain |
|
Relationships in the organization of knowledge: Kluwer. 2001;:81-98. |
(Abstract) (PDF)
|
|
Stochastic Language Models for Automatic Acquisition of Lexicons from Printed Bilingual Dictionaries |
|
Document Layout Interpretation and Its Application. 2001. |
(Abstract) (PDF)
|
|
|
|
Year 2000 | Back to top |
A Semantic Navigation Tool for the UMLS |
|
Proc. of AMIA Annual Symposium. 2000;: 971. |
(Abstract) (PDF)
|
|
Automatic Indexing by Discipline and High-Level Category: Methodology and Potential Applications |
Humphrey S, Rindflesch TC, Aronson AR
|
Proc. of the 11th SIG/CR Classification Research Workshop. 2000;:103-16. |
(Abstract) (PDF)
|
|
Discovering Missed Synonymy in a Large Concept-Orientated Methathesaurus |
|
Proc AMIA Symp. 2000 ;():354-8. |
(Abstract) (PDF)
(PMID: 11079904
) |
|
EDGAR: Extraction of Drugs, Genese, and Relations from the Biomedical Literature |
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L
|
Pac Symp Biocomput. 2000 ;():517-28. |
(Abstract) (PDF)
(PMID: 10902199
) |
|
Extracting Molecular Binding Relationships from Biomedical Text |
Rindflesch TC, Rajan J, Hunter L
|
Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95. |
(Abstract) (PDF)
|
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Extracting the Lowest-Frequency Words: Pitfalls and Possibilities |
|
Computational Linguistics. 2000;26(3):301-17. |
(Abstract) (PDF)
|
|
Identifying Proper Names in Parallel Medical Terminologies |
Bodenreider O, Zweigenbaum P
|
Stud Health Technol Inform. 2000 ;77():443-7. |
(Abstract) (PDF)
(PMID: 11187591
) |
|
Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation |
Jacquelinet C, Bodenreider O, Burgun A
|
Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000. |
(Abstract) (PDF)
|
|
Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles |
Bodenreider O, Zweigenbaum P
|
Traitement Automatique des Langues. 2000;41(3):727-757. |
(Abstract) (PDF)
|
|
Text-Based Discovery in Biomedicine: The Architecture of the DAD-System |
Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R
|
Proc AMIA Symp. 2000 ;():903-7. |
(Abstract) (PDF)
(PMID: 11080015
) |
|
The NLM Indexing Initiative |
Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ
|
Proc AMIA Symp. 2000 ;():17-21. |
(Abstract) (PDF)
(PMID: 11079836
) |
|
Using UMLS Semantics for Classification Purposes |
|
Proc AMIA Symp. 2000 ;():86-90. |
(Abstract) (PDF)
(PMID: 11079850
) |
|