Human SAGE Genie Tools
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Digital Karyotyping
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DK Microbe
What the DK Microbe Tool Can Do
Given a set of 17 base-pair digital karyotyping tags, the DK Microbe tool
searches for exact matches to virtual tags in the genomes of 2565 bacterial and viral genomes.
You may query for matches to a small number of tags by entering the
tags directly in a text box (multiple tags are separated by commas).
Alternatively, longer lists of tags to be matched may be uploaded in
a file. Note that microbial tags that are exact matches to human digital karyotyping tags
have been removed from the set of virtual microbial tags.
For a description of the bacterial and viral digital karyotyping virtual tag sets, see the following:
Chris G. Duncan, Rebecca J. Leary, Jordan Cummins,
Jimmy Cheng-Ho Lin, Chunhui Di, Carl F. Schaefer,
Tian-Li Wang, Darell Bigner, Levy Kopelovich, Bert Vogelstein,
Ken Kinzler, Victor E. Velculescu, and Hai Yan.
Identification of microbial DNA in human cancer. (Submitted)
For a detailed description of the digital karyotpying method, see the following:
Tian-Li Wang, Christine Maierhofer, Michael R. Speicher,
Christoph Lengauer, Bert Vogelstein, Kenneth W. Kinzler, and Victor E. Velculescu.
Digital karyotyping. PNAS
99(25):16156-16161.
Additional information about digital karyotyping can be found at
www.digitalkaryotyping.org
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