Scientific Supercomputing at the NIH

VITESSE

Description

VITESSE is a software package that computes likelihoods with the functionality of the LINKMAP and MLINK programs from LINKAGE

Version

Type vitesse on command line

Sample session

Input file should exist at current working directory.
% vitesse VITESSE v1.0 (c) Jeff O'Connell 1995 MLINK RUN Recombination fractions for each iteration 0 0.500000 1 0.010000 2 0.110000 3 0.210000 4 0.310000 5 0.410000 Markers: 1 2 Position on map: 1 2 Number of alleles: 2 4 Number of haplotypes:8 Generating Isozygote Class Matrices Number of Pedigrees: 200 ################################################# No. 1/200 Processing pedigree 1 The pedigree has 4 persons Peeling Nuclear Family: Father 1 Mother 2 Children: 3 4 Total Number of Parental Pairs: 1 Parental Pair Count: 1 Total number of Parental Pairs in the Pedigree: 1 ################################################# No. 2/200 Processing pedigree 2 The pedigree has 4 persons Peeling Nuclear Family: Father 1 Mother 2 Children: 3 4 Total Number of Parental Pairs: 1 Parental Pair Count: 1 Total number of Parental Pairs in the Pedigree: 1 ################################################# No. 3/200 Processing pedigree 3 The pedigree has 4 persons Peeling Nuclear Family: Father 1 Mother 2 Children: 3 4 Total Number of Parental Pairs: 1 Parental Pair Count: 1 Total number of Parental Pairs in the Pedigree: 1 ################################################# No. 4/200 Processing pedigree 4 The pedigree has 4 persons Peeling Nuclear Family: Father 1 Mother 2 Children: 3 4 Total Number of Parental Pairs: 1 Parental Pair Count: 1 Total number of Parental Pairs in the Pedigree: 1 ............... ............... .............. ............... 185 -17.484435 -7.593394 0.027696 186 -17.484435 -7.593394 0.027696 187 -17.484435 -7.593394 0.027696 188 -17.484435 -7.593394 0.027696 189 -17.484435 -7.593394 0.027696 190 -17.484435 -7.593394 0.027696 191 -17.484435 -7.593394 0.027696 192 -17.484435 -7.593394 0.027696 193 -17.484435 -7.593394 0.027696 194 -17.484435 -7.593394 0.027696 195 -17.549258 -7.621546 -0.000456 196 -17.484435 -7.593394 0.027696 197 -17.484435 -7.593394 0.027696 198 -17.484435 -7.593394 0.027696 199 -17.484435 -7.593394 0.027696 200 -17.484435 -7.593394 0.027696 ------------------------------------------- TOTALS -3497.405548 -1518.903930 -2 ln(like) = 6994.811096 Lod Score = 5.313981 ------------------------------------------- -------------------------------------------

Documentation

http://watson.hgen.pitt.edu/register/docs/vitesse.html