Description

Program for detecting marker typing incompatibilities in pedigree data.

Version

Type pedcheck on command line

Sample session

%pedcheck -h

PedCheck 1.1     (c) Jeff O'Connell  1997,1999  University of Pittsburgh
Last revision: November 24, 1998

Date: Tue Apr  8 16:28:46 2008

*****************************************************************
*       PedCheck is now covered by a license agreement.         *
*       The use of this software may require a fee.             *
*       Details can be found on the web site:                   *
*               http://watson.hgen.pitt.edu.                    *
*       This copy of PedCheck does not expire
*****************************************************************


 PedCheck options:
 -p  pedigree file ; default: pedfile.dat
 -d  locus file ; default: datafile.dat
 -n  names file
 :-e  :use estimated allele frequencies; default:use datafile frequencies if available, else set equal.
 -a  :create list of estimated allele frequencies based
           on allele counting across all pedigrees; default: false.
 -m  : pre makeped format (NO LONGER NEEDED)
 -z  : create a Mendelian consistent pedigree by zeroing out
           all individuals at any marker in a pedigree that has an
           error. Put comments at the beginning the file. Output file
           is zeroout.dat.
 -c  :same as -z except comments are put into the file comment.dat
 -t  : use the Ped and Per name from pre-makeped format;
           default: use the labels from post-makeped format.
 -x  : X-linked data
 -i  : print intro header; default: false
 -2  : Level 2 checking ; default: Level 0 and Level 1
 -3  : Level 3 checking ; default: Level 0 and Level 1

 See README file for explanation. -4  : Level 4 checking ; default: Level 0 and Level 1

Documentation

http://watson.hgen.pitt.edu/register/docs/pedcheck.html