ribl "Fis"
* Ri 2.71
*
* Ri(b,l) table is from:
** rseq 5.39 rsequence calculated from encoded sequences from:
** encode 1.41; encoding of sequences in
** * 2003/11/18 21:35:49, 1995/12/04 06:41:55, t7.symmetry
*
* BOOK/INST sequences are from:
* 2003/11/18 21:35:49, 1995/12/04 06:41:55, t7.symmetry
* (* begin module t7.symmetry *)
*
* PARAMETERS FOR Ri:
* -10 10 from-to
* 1 column of value file
* -2147483647.000000 2147483647.000000 lowest to highest Ri selected
* -2147483647.000000 2147483647.000000 lowest to highest Value selected
* not printing sequences to sequ
*     printing sequences to rixyin
* -: whole line printed when partial site
*  using Staden's Method: when f(b,l) = 0, replace with f(b,l) = 1/(n+t), t = 2
* 
* i alignmenttype first, book, instructions
*      Ri(a,l)      Ri(c,l)      Ri(g,l)      Ri(t,l)        l        a        c        g        t
     -10       10 frombase, tobase
      1.095065    -1.567900    -1.567900     0.017062      -10       19        3        3        9
     -2.152863     1.017062     0.017062    -0.830935       -9        2       18        9        5
     -1.567900    -0.830935     1.169065    -0.567900       -8        3        5       20        6
      1.095065    -3.235325    -2.152863     0.547577       -7       19        0        2       13
     -3.235325     1.654492    -3.152863    -0.830935       -6        0       28        1        5
     -3.235325    -0.345508    -3.235325     1.602025       -5        0        7        0       27
     -3.235325     1.705118    -3.235325    -0.830935       -4        0       29        0        5
      0.934600     0.754028    -3.235325    -2.152863       -3       17       15        0        2
     -3.235325     1.801333    -3.152863    -2.152863       -2        0       31        1        2
     -3.152863    -3.235325    -3.235325     1.891531       -1        1        0        0       33
      1.705118    -3.235325    -3.235325    -0.830935        0       29        0        0        5
     -0.830935    -3.235325    -3.235325     1.705118        1        5        0        0       29
      1.891531    -3.235325    -3.235325    -3.152863        2       33        0        0        1
     -2.152863    -3.152863     1.801333    -3.235325        3        2        1       31        0
     -2.152863    -3.235325     0.754028     0.934600        4        2        0       15       17
     -0.830935    -3.235325     1.705118    -3.235325        5        5        0       29        0
      1.602025    -3.235325    -0.345508    -3.235325        6       27        0        7        0
     -0.830935    -3.152863     1.654492    -3.235325        7        5        1       28        0
      0.547577    -2.152863    -3.235325     1.095065        8       13        2        0       19
     -0.567900     1.169065    -0.830935    -1.567900        9        6       20        5        3
     -0.830935     0.017062     1.017062    -2.152863       10        5        9       18        2
*
   20.676245 bits = mean (Rsequence of selected region)
    5.454965 bits = standard deviation
*
   30.245884 bits = Ri of consensus sequence from -10 to 10
  -60.774627 bits = Ri of anticonsensus sequence from -10 to 10
*
  -24.323841 bits = average Ri for random sequence from -10 to 10
*
        34 n, number of sequences used to create the matrix
*
asymmetric symmetry of the matrix
*
-5000.000000 Ri bound: lower bound on Ri
  100.000000 Z bound: lower bound on Z
    1.000000 P bound: upper probability
*
.