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Cancer Sequencing Project Data Portal
 

Data generated by the CSP Project will be managed by the investigators and the NHGRI in collaboration with the NCI Center for Bioinformatics (NCICB), using the NCI cancer Biomedical Informatics Grid (caBIG) infrastructure. Data release policies will be consistent with NHGRI's goals of rapid, complete data release except to the extent that doing so could potentially pose issues of conflict with the privacy of research participants. Investigators will rapidly release as much enabling data as possible without restrictions or controls, while at the same time adhering to the regulations and practices governing human subjects research and respecting the privacy of the research participants. The specimens being used in both projects have been anonymized, with no link being maintained between the sequence data and the participant identities. To provide further safeguards to protect the privacy of research participants, the data management plan will have two levels of access for the project data: Public and Private access .

derived apps Open Data Access
Open access data: The following data sets are available for Download, by clicking on the hyperlinks.

This ReadMe File describes the Tumor Sequencing Project (TSP) public datasets available for download.


TSP: Lung Adenocarcinoma
Data Location
Validated somatic mutations Download (Coming Soon...)
Summary data on copy number Download
Summary data on LOH Download
Limited clinicopathology data Download
List of targeted genes (TSP) Download
All of the above (zip archive) Download


JCVI JHU: Glioblastoma
List of targeted genes (JCVI) Download
Limited clinicopathology data Download (Coming Soon...)
Validated somatic mutations Download (Coming Soon...)
developers Controlled Data Access
For AUTHORIZED USERS ONLY

  1. To obtain access to the controlled data sets, please visit: http://genome.gov/20019647
  2. If you need assistance, please contact NCICB Application Support.

    Telephone: 301-451-4384 or toll free: 888-478-4423
    Email: ncicb@pop.nci.nih.gov

The following data sets are available for ftp Download


Data Location
Raw and processed genotype data from SNP arrays (CEL & CHP Files), and Trace file to sample mapping table. Download
developers BROWSE


BROWSE SITE UNDER CONSTRUCTION



National Cancer Institute Department of Health and Human Services National Institutes of Health FirstGov.gov