| | Articles Differential transcription factor occupancy but evolutionarily conserved chromatin features at the human and mouse M-CSF (CSF-1) receptor loci George A. Follows, Hiromi Tagoh, Pascal Lefevre, Gareth J. Morgan, and Constanze Bonifer Nucleic Acids Res. 2003 October 15; 31(20): 5805–5816. doi: 10.1093/nar/gkg804.PMCID: PMC219482 Use of locked nucleic acid oligonucleotides to add functionality to plasmid DNA Kirsten M. L. Hertoghs, Jonathan H. Ellis, and Ian R. Catchpole Nucleic Acids Res. 2003 October 15; 31(20): 5817–5830. doi: 10.1093/nar/gkg801.PMCID: PMC219479 Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae Odeniel Sertil, Rachna Kapoor, Brian D. Cohen, Natalia Abramova, and Charles V. Lowry Nucleic Acids Res. 2003 October 15; 31(20): 5831–5837. doi: 10.1093/nar/gkg792.PMCID: PMC219473 Genetic and biochemical interactions between SCP160 and EAP1 in yeast Bryce A. Mendelsohn, Ai-min Li, Claudia A. Vargas, Kristen Riehman, Alice Watson, and Judith L. Fridovich-Keil Nucleic Acids Res. 2003 October 15; 31(20): 5838–5847. doi: 10.1093/nar/gkg810.PMCID: PMC219487 Modification of the ionizing radiation response in living cells by an scFv against the DNA-dependent protein kinase Shuyi Li, Yoshihiko Takeda, Stéphanie Wragg, John Barrett, Andrew Phillips, and William S. Dynan Nucleic Acids Res. 2003 October 15; 31(20): 5848–5857. doi: 10.1093/nar/gkg775.PMCID: PMC219464 NMR structure of an α-L-LNA:RNA hybrid: structural implications for RNase H recognition Jakob T. Nielsen, Paul C. Stein, and Michael Petersen Nucleic Acids Res. 2003 October 15; 31(20): 5858–5867. doi: 10.1093/nar/gkg800.PMCID: PMC219478 The positive and negative regulation of Tn10 transposition by IHF is mediated by structurally asymmetric transposon arms Sven Sewitz, Paul Crellin, and Ronald Chalmers Nucleic Acids Res. 2003 October 15; 31(20): 5868–5876. doi: 10.1093/nar/gkg797.PMCID: PMC219475 An organism-specific method to rank predicted coding regions in Trypanosoma brucei Shuba Gopal, George A. M. Cross, and Terry Gaasterland Nucleic Acids Res. 2003 October 15; 31(20): 5877–5885. doi: 10.1093/nar/gkg798.PMCID: PMC219476 Modulation of gene expression in Leishmania drug resistant mutants as determined by targeted DNA microarrays Chantal Guimond, Nathalie Trudel, Christian Brochu, Nathalie Marquis, Amal El Fadili, Régis Peytavi, Guylaine Briand, Dave Richard, Nadine Messier, Barbara Papadopoulou, Jacques Corbeil, Michel G. Bergeron, Danielle Légaré, and Marc Ouellette Nucleic Acids Res. 2003 October 15; 31(20): 5886–5896. doi: 10.1093/nar/gkg806.PMCID: PMC219483 Effects of genomic context and chromatin structure on transcription-coupled and global genomic repair in mammalian cells Zhaohui Feng, Wenwei Hu, Lawrence A. Chasin, and Moon-shong Tang Nucleic Acids Res. 2003 October 15; 31(20): 5897–5906. doi: 10.1093/nar/gkg808.PMCID: PMC219485 The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana Hirokazu Handa Nucleic Acids Res. 2003 October 15; 31(20): 5907–5916. doi: 10.1093/nar/gkg795.PMCID: PMC219474 Hexameric RSF1010 helicase RepA: the structural and functional importance of single amino acid residues Günter Ziegelin, Timo Niedenzu, Rudi Lurz, Wolfram Saenger, and Erich Lanka Nucleic Acids Res. 2003 October 15; 31(20): 5917–5929. doi: 10.1093/nar/gkg790.PMCID: PMC219471 Structural study of DNA duplex containing an N-(2-deoxy-β-d-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics C. Maufrais, G. V. Fazakerley, J. Cadet, and Y. Boulard Nucleic Acids Res. 2003 October 15; 31(20): 5930–5940. doi: 10.1093/nar/gkg803.PMCID: PMC219481 Sox6 regulation of cardiac myocyte development Orit Cohen-Barak, Zanhua Yi, Nobuko Hagiwara, Koshiro Monzen, Issei Komuro, and Murray H. Brilliant Nucleic Acids Res. 2003 October 15; 31(20): 5941–5948. doi: 10.1093/nar/gkg807.PMCID: PMC219484 Antizyme frameshifting as a functional probe of eukaryotic translational termination Zemfira N. Karamysheva, Andrey L. Karamyshev, Koichi Ito, Takashi Yokogawa, Kazuya Nishikawa, Yoshikazu Nakamura, and Senya Matsufuji Nucleic Acids Res. 2003 October 15; 31(20): 5949–5956. doi: 10.1093/nar/gkg789.PMCID: PMC219470 The inflammation-induced down-regulation of plasma Fetuin-A (α2HS-Glycoprotein) in liver results from the loss of interaction between long C/EBP isoforms at two neighbouring binding sites Christophe Gangneux, Maryvonne Daveau, Martine Hiron, Céline Derambure, John Papaconstantinou, and Jean-Philippe Salier Nucleic Acids Res. 2003 October 15; 31(20): 5957–5970. doi: 10.1093/nar/gkg788.PMCID: PMC219469 A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations Nikolay Korolev, Alexander P. Lyubartsev, Aatto Laaksonen, and Lars Nordenskiöld Nucleic Acids Res. 2003 October 15; 31(20): 5971–5981. doi: 10.1093/nar/gkg802.PMCID: PMC219480 RNA cleaving ‘10-23’ DNAzymes with enhanced stability and activity Steffen Schubert, Deniz C. Gül, Hans-Peter Grunert, Heinz Zeichhardt, Volker A. Erdmann, and Jens Kurreck Nucleic Acids Res. 2003 October 15; 31(20): 5982–5992. doi: 10.1093/nar/gkg791.PMCID: PMC219472 π Protein- and ATP-dependent transitions from ‘closed’ to ‘open’ complexes at the γ ori of plasmid R6K Ricardo Krüger and Marcin Filutowicz Nucleic Acids Res. 2003 October 15; 31(20): 5993–6003. doi: 10.1093/nar/gkg809.PMCID: PMC219486 Human RNA polymerase II is partially blocked by DNA adducts derived from tumorigenic benzo[c]phenanthrene diol epoxides: relating biological consequences to conformational preferences Thomas M. Schinecker, Rebecca A. Perlow, Suse Broyde, Nicholas E. Geacintov, and David A. Scicchitano Nucleic Acids Res. 2003 October 15; 31(20): 6004–6015. doi: 10.1093/nar/gkg771.PMCID: PMC219463 Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information Vsevolod J. Makeev, Alexander P. Lifanov, Anna G. Nazina, and Dmitri A. Papatsenko Nucleic Acids Res. 2003 October 15; 31(20): 6016–6026. doi: 10.1093/nar/gkg799.PMCID: PMC219477 Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2·MSH6 (MutSα) and MSH2·MSH7 (MutSγ) Shiau-Yin Wu, Kevin Culligan, Meindert Lamers, and John Hays Nucleic Acids Res. 2003 October 15; 31(20): 6027–6034. doi: 10.1093/nar/gkg780.PMCID: PMC219466 Solvation change and ion release during aminoacylation by aminoacyl-tRNA synthetases Rajat Banerjee, Amit Kumar Mandal, Rajesh Saha, Soumi Guha, Soma Samaddar, Anusree Bhattacharyya, and Siddhartha Roy Nucleic Acids Res. 2003 October 15; 31(20): 6035–6042. doi: 10.1093/nar/gkg779.PMCID: PMC219465 A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate David C. Samuels, Richard J. Boys, Daniel A. Henderson, and Patrick F. Chinnery Nucleic Acids Res. 2003 October 15; 31(20): 6043–6052. doi: 10.1093/nar/gkg784.PMCID: PMC219467 Detection of regulatory circuits by integrating the cellular networks of protein–protein interactions and transcription regulation Esti Yeger-Lotem and Hanah Margalit Nucleic Acids Res. 2003 October 15; 31(20): 6053–6061. doi: 10.1093/nar/gkg787.PMCID: PMC219468 NAR Methods Online Sequential DEXAS: a method for obtaining DNA sequences from genomic DNA and blood in one reaction Michael Motz, Gregor Sagner, Svante Pääbo, and Christian Kilger Nucleic Acids Res. 2003 October 15; 31(20): e121. doi: 10.1093/nar/gng112.PMCID: PMC219489 Standardized determination of real-time PCR efficiency from a single reaction set-up Ales Tichopad, Michael Dilger, Gerhard Schwarz, and Michael W. Pfaffl Nucleic Acids Res. 2003 October 15; 31(20): e122. doi: 10.1093/nar/gng122.PMCID: PMC219490 A novel real-time quantitative PCR method using attached universal template probe Yuanli Zhang, Dabing Zhang, Wenquan Li, Jianqun Chen, Yufa Peng, and Wei Cao Nucleic Acids Res. 2003 October 15; 31(20): e123. doi: 10.1093/nar/gng123.PMCID: PMC219491 Pentaprobe: a comprehensive sequence for the one-step detection of DNA-binding activities Ann H. Y. Kwan, Robert Czolij, Joel P. Mackay, and Merlin Crossley Nucleic Acids Res. 2003 October 15; 31(20): e124. doi: 10.1093/nar/gng124.PMCID: PMC219492 Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level Bénédicte Géron-Landre, Thibaut Roulon, Pierre Desbiolles, and Christophe Escudé Nucleic Acids Res. 2003 October 15; 31(20): e125. doi: 10.1093/nar/gng125.PMCID: PMC219493 Corrigendum Nucleic Acids Res. 2003 October 15; 31(20): 6062. doi: 10.1093/nar/gkg837.PMCID: PMC219488 Corrects: Isabelle Salles-Passador, et al. Phosphorylation of the PCNA binding domain of the large subunit of replication factor C on Thr506 by cyclin-dependent kinases regulates binding to PCNA. Nucleic Acids Res. 2003 September 1; 31(17): 5202–5211. |