| | Articles RNA helicase A interacts with dsDNA and topoisomerase IIα Kai Zhou, Kyoo-Tae Choe, Zaheer Zaidi, Qi Wang, Michael B. Mathews, and Chee-Gun Lee PMCID: PMC154214 The versatile thymine DNA-glycosylase: a comparative characterization of the human, Drosophila and fission yeast orthologs Ulrike Hardeland, Marc Bentele, Josef Jiricny, and Primo Schär PMCID: PMC154230 A candidate prostate cancer susceptibility gene encodes tRNA 3′ processing endoribonuclease Hiroaki Takaku, Asako Minagawa, Masamichi Takagi, and Masayuki Nashimoto PMCID: PMC154223 Molecular determinants of the cell-cycle regulated Mcm1p–Fkh2p transcription factor complex Joanna Boros, Fei-Ling Lim, Zoulfia Darieva, Aline Pic-Taylor, Ruth Harman, Brian A. Morgan, and Andrew D. Sharrocks PMCID: PMC154233 Identification of stop codon readthrough genes in Saccharomyces cerevisiae Olivier Namy, Guillemette Duchateau-Nguyen, Isabelle Hatin, Sylvie Hermann-Le Denmat, Michel Termier, and Jean-Pierre Rousset PMCID: PMC154216 CpG oligodeoxynucleotide 5mer-induced apoptosis in MOLT-4 leukaemia cells does not require caspase 3 or new protein synthesis David M. Tidd, Caroline M. Broughton, and Richard E. Clark PMCID: PMC154220 The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase François Fuks, Paul J. Hurd, Rachel Deplus, and Tony Kouzarides PMCID: PMC154218 The DNA-bending protein HMGB1 is a cellular cofactor of Sleeping Beauty transposition Hatem Zayed, Zsuzsanna Izsvák, Dheeraj Khare, Udo Heinemann, and Zoltán Ivics PMCID: PMC154227 Steady-state and time-resolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences Priyamvada Rai, Timothy David Cole, Elizabeth Thompson, David P. Millar, and Stuart Linn PMCID: PMC154225 Dependence of pre-mRNA introns on PRP17, a non-essential splicing factor: implications for efficient progression through cell cycle transitions Geetanjali Chawla, Aparna K. Sapra, Uttam Surana, and Usha Vijayraghavan PMCID: PMC154219 Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies Angela M. Domitrovich and Gary R. Kunkel PMCID: PMC154217 The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b Gertraud Burger, B. Franz Lang, Hans-Peter Braun, and Stefanie Marx PMCID: PMC154212 Sequence and structure of the extrachromosomal palindrome encoding the ribosomal RNA genes in Dictyostelium Richard Sucgang, Guokai Chen, Wen Liu, Ryan Lindsay, Jing Lu, Donna Muzny, Gad Shaulsky, William Loomis, Richard Gibbs, and Adam Kuspa PMCID: PMC154234 HMG box transcription factor TCF-4’s interaction with CtBP1 controls the expression of the Wnt target Axin2/Conductin in human embryonic kidney cells Tomas Valenta, Jan Lukas, and Vladimir Korinek PMCID: PMC154232 RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III Irina Calin-Jageman and Allen W. Nicholson PMCID: PMC154215 Divergent synthetic nucleotide motif recognition pattern: design and development of potent immunomodulatory oligodeoxyribonucleotide agents with distinct cytokine induction profiles Ekambar R. Kandimalla, Lakshmi Bhagat, Daqing Wang, Dong Yu, Fu-Gang Zhu, Jimmy Tang, Hui Wang, Ping Huang, Ruiwen Zhang, and Sudhir Agrawal PMCID: PMC154229 Similar behaviour of single-strand and double-strand siRNAs suggests they act through a common RNAi pathway Torgeir Holen, Mohammed Amarzguioui, Eshrat Babaie, and Hans Prydz PMCID: PMC154224 Assembly and isolation of intermediate steps of transcription complexes formed on the human 5S rRNA gene Stephan Weser, Jana Riemann, Klaus H. Seifart, and Wolfgang Meissner PMCID: PMC154231 RNA editing in hornwort chloroplasts makes more than half the genes functional Masanori Kugita, Yuhei Yamamoto, Takeshi Fujikawa, Tohoru Matsumoto, and Koichi Yoshinaga PMCID: PMC154213 Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana Olivier Mathieu, Yasushi Yukawa, José-Luis Prieto, Isabelle Vaillant, Masahiro Sugiura, and Sylvette Tourmente PMCID: PMC154221 Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes Takashi Nishiyama, Hiroshi Yamamoto, Norihiro Shibuya, Yoshinori Hatakeyama, Akira Hachimori, Toshio Uchiumi, and Nobuhiko Nakashima PMCID: PMC154222 Topological structure analysis of the protein–protein interaction network in budding yeast Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, and Runsheng Chen PMCID: PMC154226 Stimulation of human DNA polymerase ε by MDM2 Hitomi Asahara, Ying Li, Jill Fuss, Dale S. Haines, Nikolina Vlatkovic, Mark T. Boyd, and Stuart Linn PMCID: PMC154228 NAR Methods Online RNase T1 mediated base-specific cleavage and MALDI-TOF MS for high-throughput comparative sequence analysis Ralf Hartmer, Niels Storm, Sebastian Boecker, Charles P. Rodi, Franz Hillenkamp, Christian Jurinke, and Dirk van den Boom PMCID: PMC154235 Manual 768 or 384 well microplate gel ‘dry’ electrophoresis for PCR checking and SNP genotyping Tom R. Gaunt, Lesley J. Hinks, Hamid Rassoulian, and Ian N. M. Day PMCID: PMC154236 On the normalization of RNA equilibrium free energy to the length of the sequence Dmitri D. Pervouchine, Joel H. Graber, and Simon Kasif PMCID: PMC154237 Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry Jörg Tost, Philipp Schatz, Matthias Schuster, Kurt Berlin, and Ivo Glynne Gut PMCID: PMC154238 DNA modification and functional delivery into human cells using Escherichia coli DH10B Kumaran Narayanan and Peter E. Warburton PMCID: PMC154239 Testing for differentially expressed genes with microarray data Chen-An Tsai, Yi-Ju Chen, and James J. Chen PMCID: PMC154240 A new strategy to amplify degraded RNA from small tissue samples for microarray studies Charlie C. Xiang, Mei Chen, Li Ma, Quang N. Phan, Jason M. Inman, Olga A. Kozhich, and Michael J. Brownstein PMCID: PMC154241 |
