| | Articles SURVEY AND SUMMARY: The phylogenetic distribution of bacterial ribonucleases Ciarán Condon and Harald Putzer Nucleic Acids Res. 2002 December 15; 30(24): 5339–5346. PMCID: PMC140075 Characterization of the fission yeast ribosomal DNA binding factor: components share homology with Upstream Activating Factor and with SWI/SNF subunits Meilin Liu, Ailan Guo, Boris Boukhgalter, Kaitlin Van Den Heuvel, Matthew Tripp, and Louise Pape Nucleic Acids Res. 2002 December 15; 30(24): 5347–5359. PMCID: PMC140063 Interaction of C5 protein with RNA aptamers selected by SELEX June Hyung Lee, Hana Kim, Jaehyeong Ko, and Younghoon Lee Nucleic Acids Res. 2002 December 15; 30(24): 5360–5368. PMCID: PMC140078 Functional second genes generated by retrotransposition of the X-linked ribosomal protein genes Tamayo Uechi, Noriko Maeda, Tatsuo Tanaka, and Naoya Kenmochi Nucleic Acids Res. 2002 December 15; 30(24): 5369–5375. PMCID: PMC140079 A hairpin near the 5′ end stabilises the DNA gyrase mRNA in Mycobacterium smegmatis Shyam Unniraman, Monalisa Chatterji, and Valakunja Nagaraja Nucleic Acids Res. 2002 December 15; 30(24): 5376–5381. PMCID: PMC140080 Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale Odile Lecompte, Raymond Ripp, Jean-Claude Thierry, Dino Moras, and Olivier Poch Nucleic Acids Res. 2002 December 15; 30(24): 5382–5390. PMCID: PMC140077 Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains Rahul A. Aras, Aaron J. Small, Takafumi Ando, and Martin J. Blaser Nucleic Acids Res. 2002 December 15; 30(24): 5391–5397. PMCID: PMC140068 α/γ Transitions in the B-DNA backbone Péter Várnai, Dragana Djuranovic, Richard Lavery, and Brigitte Hartmann Nucleic Acids Res. 2002 December 15; 30(24): 5398–5406. PMCID: PMC140057 A directional nucleation-zipping mechanism for triple helix formation Patrizia Alberti, Paola B. Arimondo, Jean-Louis Mergny, Thérèse Garestier, Claude Hélène, and Jian-Sheng Sun Nucleic Acids Res. 2002 December 15; 30(24): 5407–5415. PMCID: PMC140048 Characterisation of the DNA-dependent ATPase activity of human DNA topoisomerase IIβ: mutation of Ser165 in the ATPase domain reduces the ATPase activity and abolishes the in vivo complementation ability Katherine L. West, Rosalind M. Turnbull, Elaine Willmore, Jeremy H. Lakey, and Caroline A. Austin Nucleic Acids Res. 2002 December 15; 30(24): 5416–5424. PMCID: PMC140051 In vivo selection of spectinomycin-binding RNAs Jeff M. Zimmerman and L. James Maher, III Nucleic Acids Res. 2002 December 15; 30(24): 5425–5435. PMCID: PMC140070 Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase Andreas Jäger, Regina Samorski, Felicitas Pfeifer, and Gabriele Klug Nucleic Acids Res. 2002 December 15; 30(24): 5436–5443. PMCID: PMC140082 Characterization of the interaction between the nucleotide exchange factor EF-Ts from nematode mitochondria and elongation factor Tu Takashi Ohtsuki, Masayuki Sakurai, Aya Sato, and Kimitsuna Watanabe Nucleic Acids Res. 2002 December 15; 30(24): 5444–5451. PMCID: PMC140056 Identification of cellular mRNA targets for RNA-binding protein Sam68 Michiyasu Itoh, Izumi Haga, Qing-Hua Li, and Jun-ichi Fujisawa Nucleic Acids Res. 2002 December 15; 30(24): 5452–5464. PMCID: PMC140046 The centrosomal kinase Aurora-A/STK15 interacts with a putative tumor suppressor NM23-H1 Jian Du and Gregory J. Hannon Nucleic Acids Res. 2002 December 15; 30(24): 5465–5475. PMCID: PMC140054 Mutations in U5 snRNA loop 1 influence the splicing of different genes in vivo Raymond T. O’Keefe Nucleic Acids Res. 2002 December 15; 30(24): 5476–5484. PMCID: PMC140076 Propynyl groups in duplex DNA: stability of base pairs incorporating 7-substituted 8-aza-7-deazapurines or 5-substituted pyrimidines Junlin He and Frank Seela Nucleic Acids Res. 2002 December 15; 30(24): 5485–5496. PMCID: PMC140073 Synthesis, characterization and solution structure of tethered oligonucleotides containing an internal 3′-phosphoglycolate, 5′-phosphate gapped lesion Hans-Dieter Junker, Silvia T. Hoehn, Richard C. Bunt, Vasilios Marathius, Jingyang Chen, Christopher J. Turner, and JoAnne Stubbe Nucleic Acids Res. 2002 December 15; 30(24): 5497–5508. PMCID: PMC140059 Cooperative binding of Sox10 to DNA: requirements and consequences Beate Schlierf, Andreas Ludwig, Karin Klenovsek, and Michael Wegner Nucleic Acids Res. 2002 December 15; 30(24): 5509–5516. PMCID: PMC140074 Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach Leendert W. Hamoen, Wiep Klaas Smits, Anne de Jong, Siger Holsappel, and Oscar P. Kuipers Nucleic Acids Res. 2002 December 15; 30(24): 5517–5528. PMCID: PMC140081 Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes Arvind Raghavan, Rachel L. Ogilvie, Cavan Reilly, Michelle L. Abelson, Shalini Raghavan, Jayprakash Vasdewani, Mitchell Krathwohl, and Paul R. Bohjanen Nucleic Acids Res. 2002 December 15; 30(24): 5529–5538. PMCID: PMC140061 Specificity of Mnt ‘master residue’ obtained from in vivo and in vitro selections Fauzi S. Silbaq, Steven E. Ruttenberg, and Gary D. Stormo Nucleic Acids Res. 2002 December 15; 30(24): 5539–5548. PMCID: PMC140065 Discovery of novel transcription factor binding sites by statistical overrepresentation Saurabh Sinha and Martin Tompa Nucleic Acids Res. 2002 December 15; 30(24): 5549–5560. PMCID: PMC140044 Integrity of duplex structures without hydrogen bonding: DNA with pyrene paired at abasic sites Serge Smirnov, Tracy J. Matray, Eric T. Kool, and Carlos de los Santos Nucleic Acids Res. 2002 December 15; 30(24): 5561–5569. PMCID: PMC140072 Studies on the minimal lengths required for DNA primers to be extended by the Tetrahymena telomerase: implications for primer positioning by the enzyme Nava Baran, Yonit Haviv, Beena Paul, and Haim Manor Nucleic Acids Res. 2002 December 15; 30(24): 5570–5578. PMCID: PMC140050 Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis Etienne-Pascal Journet, Diederik van Tuinen, Jérome Gouzy, Hervé Crespeau, Véronique Carreau, Mary-Jo Farmer, Andreas Niebel, Thomas Schiex, Olivier Jaillon, Odile Chatagnier, Laurence Godiard, Fabienne Micheli, Daniel Kahn, Vivienne Gianinazzi-Pearson, and Pascal Gamas Nucleic Acids Res. 2002 December 15; 30(24): 5579–5592. PMCID: PMC140066 NAR Methods Online Promoter-trapping in Saccharomyces cerevisiae by radiation-assisted fragment insertion Markus Kiechle, Palaniyandi Manivasakam, Friederike Eckardt-Schupp, Robert H. Schiestl, and Anna A. Friedl Nucleic Acids Res. 2002 December 15; 30(24): e136. PMCID: PMC140085 Stochastic processes defining sensitivity and variability of internally calibrated quantitative NASBA-based viral load assays Jos J. A. M. Weusten, Pieter A. W. M. Wouters, Martien C. A. van Zuijlen, and Paul A. van de Wiel Nucleic Acids Res. 2002 December 15; 30(24): e137. PMCID: PMC140086 A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non-canonical NTPs Robert Padilla and Rui Sousa Nucleic Acids Res. 2002 December 15; 30(24): e138. PMCID: PMC140087 Random DNA fragmentation with endonuclease V: application to DNA shuffling Kentaro Miyazaki Nucleic Acids Res. 2002 December 15; 30(24): e139. PMCID: PMC140088 T7 RNA polymerase as a self-replicating label for antigen quantification Bakhos A. Tannous, Eleftheria Laios, and Theodore K. Christopoulos Nucleic Acids Res. 2002 December 15; 30(24): e140. PMCID: PMC140089 Optimization of trans-splicing ribozyme efficiency and specificity by in vivo genetic selection Brian G. Ayre, Uwe Köhler, Robert Turgeon, and Jim Haseloff Nucleic Acids Res. 2002 December 15; 30(24): e141. PMCID: PMC140090 Novel retroviral vectors to facilitate expression screens in mammalian cells Eugene Y. Koh, Tong Chen, and George Q. Daley Nucleic Acids Res. 2002 December 15; 30(24): e142. PMCID: PMC140091 Corrigenda Nucleic Acids Res. 2002 December 15; 30(24): 5593. PMCID: PMC140083 Corrects: Suparna Chandra Sanyal, et al. 23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding. Nucleic Acids Res. 2002 June 1; 30(11): 2390–2397. Nucleic Acids Res. 2002 December 15; 30(24): 5593. PMCID: PMC140084 Corrects: Emiko Kinoshita-Kikuta, et al. A novel procedure for simple and efficient genotyping of single nucleotide polymorphisms by using the Zn2+–cyclen complex. Nucleic Acids Res. 2002 November 15; 30(22): e126. |