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From Molecular WIKI
Table 1. Feature Highlights of geWorkbench and GenePattern
| Feature | geWorkbench | GenePattern |
| Gene Expression Analysis | Yes | Yes |
| Sequence Analysis | Yes | Yes |
| Proteomics Analysis | No | Yes |
| Structure Analysis | Yes | No |
| SNP/CNV Analysis | No | Yes |
| Web Interface | No | Yes |
| Graphical User Interface | Yes | Yes |
| Integration with caArray | Yes | Yes |
| Integration with caIntegrator | No | Yes |
| caGrid Service | Yes | Yes |
| Integration with Each Other | Yes | Yes |
| Component/Modular Design | Yes | Yes |
| Integration with Public Annotation Resources | Yes | No |
| Build Workflows | Yes | Yes |
| Access to MAGNET Tools | Yes | No |
| Easy Access to Command Line Tools | Yes | Yes |
| Integrate Third-party Tools without Additional Coding | No | Yes |
| Comprehensive Repository of Modules | Yes | Yes |
Table 2. Applications to specific user cases
| Use Cases | geWorkbench | GenePattern |
| Load an affy dataset, do clustering | Yes | Yes |
