{version = 1.02; (* of capsmark.p 1997 October 17}
(* begin module describe.capsmark *)
(*
name
capsmark: read sequence; make features for capitalized regions
synopsis
capsmark(sequ: in, capsmarkp: in, searchp: out, output: out)
files
sequ: raw DNA sequence in lower case except for objects
of interest marked in upper case.
searchp: search parameters for the capitalized regions
capsmarkp: parameters to control the program. The file must contain the
following parameters, one per line:
parameterversion: The version number of the program. This allows the
user to be warned if an old parameter file is used.
name: a string of characters to name the sequence.
output: messages to the user
description
Sequences are often marked by people with capital letters
to indicate interesting regions (exons, primers, mutations, etc)
This program creates lister features for a raw sequence.
examples
documentation
see also
lister.p
author
Thomas Dana Schneider
bugs
technical notes
*)
(* end module describe.capsmark *)
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