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UGID:3093895     UniGene Hs.702010     Homo sapiens (human)   DDX42 Order cDNA clone, Links
DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001147663.1 PREDICTED: DEAD box polypeptide 42 protein isoform 5 P. troglodytes 100.0 937
NP_031398.2 DEAD box polypeptide 42 protein H. sapiens 100.0 937
XP_537598.2 PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1 C. lupus familiaris 100.0 688
XP_001116381.1 PREDICTED: similar to DEAD box polypeptide 42 protein isoform 5 M. mulatta 99.9 936
NP_082350.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 M. musculus 99.0 928
NP_001080569.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 X. laevis 88.1 946
NP_648413.1 CG6418 CG6418-PB D. melanogaster 68.1 734
NP_497743.1 C46F11.4 C. elegans 59.9 755
NP_566099.1 DEAD/DEAH box helicase, putative A. thaliana 58.2 732
XP_001690022.1 DEAD-box RNA helicase C. reinhardtii 52.3 430
NP_014287.1 Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing; Dbp2p S. cerevisiae 50.4 491
XP_962960.2 ATP-dependent RNA helicase dbp-2 N. crassa 49.9 457
NP_997777.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 D. rerio 49.1 472

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Expression Profile: View expression levels using UniGene's EST ProfileViewer
[Show more entries with profiles like this]
Note: Highly represented (2.0 pct) in cDNA library dbEST:6890, GN0030.
GEO profiles: Gene expression profiles in the NCBI Gene Expression Omnibus database
cDNA Sources: brain; skin; embryonic tissue; uterus; placenta; intestine; lung; mixed; bone; ear; testis; adrenal gland; bladder; mouth; thyroid; adipose tissue; blood; spleen; cervix; trachea; prostate; mammary gland; kidney; tonsil; pharynx; uncharacterized tissue; amniotic fluid; heart; eye; liver; lymph node; muscle; pancreas; thymus; ovary; connective tissue; stomach; larynx; parathyroid; pituitary gland; ascites; lymph
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q23.3
UniSTS entry: Chr 17 A007J39
UniSTS entry: Chr 17 RH80617
UniSTS entry: Chr 17 D17S1492E
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

AF083255.1 Homo sapiens RNA helicase-related protein mRNA, complete cds PA
AB036090.1 Homo sapiens mRNA for RNA helicase-related protein, complete cds P
AL050096.1 Homo sapiens mRNA; cDNA DKFZp586A0419 (from clone DKFZp586A0419) PA
AK126480.1 Homo sapiens cDNA FLJ44516 fis, clone UTERU3002600, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA P
AK122737.1 Homo sapiens cDNA FLJ16253 fis, clone HLUNG2015184, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA PA
NM_203499.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA PA
AK001964.1 Homo sapiens cDNA FLJ11102 fis, clone PLACE1005646, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA P
CR617579.1 full-length cDNA clone CS0DI039YL05 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR606414.1 full-length cDNA clone CS0DC014YH22 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
BC078667.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:6107393), partial cds PA
BC093081.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:111493 IMAGE:30407786), complete cds PA
NM_007372.2 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 1, mRNA PA
BC008208.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone IMAGE:3869206), partial cds PA
BC015505.1 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA clone MGC:9119 IMAGE:3905607), complete cds PA
AK292908.1 Homo sapiens cDNA FLJ78746 complete cds, highly similar to Homo sapiens, RNA helicase-related protein P
AK096751.1 Homo sapiens cDNA FLJ39432 fis, clone PROST2002927 P
AK095772.1 Homo sapiens cDNA FLJ38453 fis, clone FEBRA2019663, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (DDX42), transcript variant 2, mRNA P
AF147429.1 Homo sapiens full length insert cDNA clone YP80G10 A

EST sequences (10 of 512) [Show all sequences]

AA975181.1 Clone IMAGE:1555392 kidney 3' read
AA988360.1 Clone IMAGE:1605574 kidney 3' read
AI022474.1 Clone IMAGE:1650227 parathyroid 3' read
AI093311.1 Clone IMAGE:1695059 uterus 3' read
AI127821.1 Clone IMAGE:1711705 uterus 3' read
AI139484.1 Clone IMAGE:1710614 uterus 3' read A
AI142366.1 Clone IMAGE:1839932 testis 5' read
AI142758.1 Clone IMAGE:1634231 mixed 3' read P
AI147360.1 Clone IMAGE:1839932 testis 3' read
AI149108.1 Clone IMAGE:1721052 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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