title '15 Rts1 sites';
(* zero base is invariant T *)

default numbering piece;
default numbering 1;
default out-of-range reduce-range;

organism P.Rts1; chromosome P.Rts1;
piece K00053; (* RTSREPA *)
get from 28 +200 to same -200 direction -; (* NEW by scan *)
get from 63 +200 to same -200 direction -;
get from 135 +200 to same -200 direction -;
get from 163 +200 to same -200 direction -;
get from 200 +200 to same -200 direction -;
get from 233 +200 to same -200 direction -;
get from 1201 +200 to same -200 direction -; (* NEW by scan *)
get from 1223 +200 to same -200 direction -;
get from 1244 +200 to same -200 direction -; (* NEW by scan *)
get from 1265 +200 to same -200 direction -;
get from 1286 +200 to same -200 direction -;

piece M60191; (* RTSINC1B *)
get from 79 -200 to same +200 direction +;
get from 177 -200 to same +200 direction +;
get from 271 +200 to same -200 direction -;
get from 355 +200 to same -200 direction -;
(* instshift 1.31, shifted 0 bases, range set to -200 to 200 *)