title "P4 origin";

(*
2000 Feb 29

Journal of Virology, September 1999, p. 7308-7316, Vol. 73,
No. 9
Characterization of the oriI and
oriII Origins of Replication in
Phage-Plasmid P4 
Arianna Tocchetti, Gloria Galimberti, Gianni Dehò, and Daniela Ghisotti* 

http://jvi.asm.org/cgi/content/full/73/9/7308?view=full&pmid=10438819

Repeat sites: fig 4

Sequences of the minimal ori1, ori2, and crr sites. For ori1, the
sequence of the 9298-to-9421 region is reported. For crr, the sequence of
the 4260-to-4420 region is reported, corresponding to one of the two
direct repeats in crr. The type I iterons are boxed. The arrows indicate the
relative positions of the first base of each iteron, respective to the first
iteron from the left. For ori2, the sequence of the 6219-to-6254 region is
reported. The hairpin structure formed by this sequence is shown. 

wget http://jvi.asm.org/content/vol73/issue9/images/large/jv0990119004.jpeg

*)

organism B.P4;
chromosome B.P4;
piece X51522;

name "ori1";
get from 9312 -100 to same +100 direction +;
get from 9322 -100 to same +100 direction +;
get from 9333 -100 to same +100 direction +;
get from 9358 +100 to same -100 direction -; (* reversed *)
get from 9398 -100 to same +100 direction +;
get from 9408 -100 to same +100 direction +;

name "crr";
get from 4319 +100 to same -100 direction -; (* reversed *)
get from 4328 +100 to same -100 direction -; (* reversed *)
get from 4368 -100 to same +100 direction +;
get from 4386 -100 to same +100 direction +;
get from 4403 +100 to same -100 direction -; (* reversed *)